Unraveling the Leloir Pathway of Bifidobacterium bifidum: Significance of the Uridylyltransferases

ABSTRACT The GNB/LNB (galacto-N-biose/lacto-N-biose) pathway plays a crucial role in bifidobacteria during growth on human milk or mucin from epithelial cells. It is thought to be the major route for galactose utilization in Bifidobacterium longum as it is an energy-saving variant of the Leloir pathway. Both pathways are present in B. bifidum, and galactose 1-phosphate (gal1P) is considered to play a key role. Due to its toxic nature, gal1P is further converted into its activated UDP-sugar through the action of poorly characterized uridylyltransferases. In this study, three uridylyltransferases (galT1, galT2, and ugpA) from Bifidobacterium bifidum were cloned in an Escherichia coli mutant and screened for activity on the key intermediate gal1P. GalT1 and GalT2 showed UDP-glucose-hexose-1-phosphate uridylyltransferase activity (EC 2.7.7.12), whereas UgpA showed promiscuous UTP-hexose-1-phosphate uridylyltransferase activity (EC 2.7.7.10). The activity of UgpA toward glucose 1-phosphate was about 33-fold higher than that toward gal1P. GalT1, as part of the bifidobacterial Leloir pathway, was about 357-fold more active than GalT2, the functional analog in the GNB/LNB pathway. These results suggest that GalT1 plays a more significant role than previously thought and predominates when B. bifidum grows on lactose and human milk oligosaccharides. GalT2 activity is required only during growth on substrates with a GNB core such as mucin glycans.

[1]  F. Guarner,et al.  Gut flora in health and disease , 2003, The Lancet.

[2]  Aldert L. Zomer,et al.  Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging , 2010, Proceedings of the National Academy of Sciences.

[3]  B. Mollet,et al.  Galactose utilization in Lactobacillus helveticus: isolation and characterization of the galactokinase (galK) and galactose-1-phosphate uridyl transferase (galT) genes , 1991, Journal of bacteriology.

[4]  P. Frey,et al.  Standard free energies for uridylyl group transfer by hexose-1-P uridylyltransferase and UDP-hexose synthase and for the hydrolysis of uridine 5'-phosphoimidazolate. , 1996, Biochemistry.

[5]  S. Fushinobu Unique Sugar Metabolic Pathways of Bifidobacteria , 2010, Bioscience, biotechnology, and biochemistry.

[6]  Haeyoung Jeong,et al.  Complete Genome Sequence of the Probiotic Bacterium Bifidobacterium bifidum Strain BGN4 , 2012, Journal of bacteriology.

[7]  Li Ding,et al.  Efficient one-pot multienzyme synthesis of UDP-sugars using a promiscuous UDP-sugar pyrophosphorylase from Bifidobacterium longum (BLUSP). , 2012, Chemical communications.

[8]  M. Kitaoka,et al.  Physiology of Consumption of Human Milk Oligosaccharides by Infant Gut-associated Bifidobacteria* , 2011, The Journal of Biological Chemistry.

[9]  M. Nishimoto,et al.  Novel Putative Galactose Operon Involving Lacto-N-Biose Phosphorylase in Bifidobacterium longum , 2005, Applied and Environmental Microbiology.

[10]  Aldert L. Zomer,et al.  Complete Genome Sequence of Bifidobacterium bifidum S17 , 2010, Journal of bacteriology.

[11]  Christian von Mering,et al.  STRING 8—a global view on proteins and their functional interactions in 630 organisms , 2008, Nucleic Acids Res..

[12]  D. Decker,et al.  Update on Nucleotide Sugar Synthesis UDP-Sugar Pyrophosphorylase : A New Old Mechanism for Sugar Activation 1 [ W ] , 2011 .

[13]  W. D. de Vos,et al.  Differential Transcriptional Response of Bifidobacterium longum to Human Milk, Formula Milk, and Galactooligosaccharide , 2008, Applied and Environmental Microbiology.

[14]  Peer Bork,et al.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[15]  J. Thoden,et al.  The molecular architecture of glucose‐1‐phosphate uridylyltransferase , 2007, Protein science : a publication of the Protein Society.

[16]  M. Nishimoto,et al.  Practical Preparation of Lacto-N-biose I, a Candidate for the Bifidus Factor in Human Milk , 2007, Bioscience, biotechnology, and biochemistry.

[17]  B. Wanner,et al.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[18]  Zhengliang L. Wu,et al.  Universal Phosphatase‐Coupled Glycosyltransferase Assay , 2011, Glycobiology.

[19]  Mi-Hwa Oh,et al.  Complete Genome Sequence of Bifidobacterium longum subsp. longum KACC 91563 , 2011, Journal of bacteriology.

[20]  M. Kitaoka,et al.  Bifidobacterial enzymes involved in the metabolism of human milk oligosaccharides. , 2012, Advances in nutrition.

[21]  A. Kimura,et al.  Presence of a single enzyme catalyzing the pyrophosphorolysis of UDP-glucose and UDP-galactose in Bifidobacterium bifidum. , 1978, Biochimica et biophysica acta.

[22]  Masafumi Hidaka,et al.  The Crystal Structure of Galacto-N-biose/Lacto-N-biose I Phosphorylase , 2009, Journal of Biological Chemistry.

[23]  J. Chapman,et al.  The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome , 2008, Proceedings of the National Academy of Sciences.

[24]  M. Nishimoto,et al.  Distribution of In Vitro Fermentation Ability of Lacto-N-Biose I, a Major Building Block of Human Milk Oligosaccharides, in Bifidobacterial Strains , 2009, Applied and Environmental Microbiology.

[25]  E. P. Kennedy,et al.  UTP: alpha-D-glucose-1-phosphate uridylyltransferase of Escherichia coli: isolation and DNA sequence of the galU gene and purification of the enzyme , 1994, Journal of bacteriology.

[26]  D. G. Gibson,et al.  Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.

[27]  D. Mills,et al.  Release and utilization of N-acetyl-D-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis. , 2012, Anaerobe.

[28]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[29]  S. Kaneko,et al.  UDP-sugar Pyrophosphorylase with Broad Substrate Specificity Toward Various Monosaccharide 1-Phosphates from Pea Sprouts* , 2004, Journal of Biological Chemistry.

[30]  A. Kimura,et al.  Purification and properties of UDP-glucose (UDP-galactose) pyrophosphorylase from Bifidobacterium bifidum. , 1979, Journal of biochemistry.

[31]  P. Frey,et al.  Significance of metal ions in galactose-1-phosphate uridylyltransferase: an essential structural zinc and a nonessential structural iron. , 1999, Biochemistry.

[32]  A. Margolles,et al.  Mucin Degradation by Bifidobacterium Strains Isolated from the Human Intestinal Microbiota , 2008, Applied and Environmental Microbiology.

[33]  Marco Ventura,et al.  Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract , 2009, Applied and Environmental Microbiology.

[34]  Keith E. J. Tyo,et al.  Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli , 2010, Science.

[35]  W. Soetaert,et al.  A constitutive expression system for high-throughput screening , 2011 .

[36]  W. D. de Vos,et al.  The fecal bifidobacterial transcriptome of adults: A microarray approach , 2011, Gut microbes.

[37]  E. Sonnhammer,et al.  Large‐scale prediction of function shift in protein families with a focus on enzymatic function , 2005, Proteins.

[38]  P. Frey The Leloir pathway: a mechanistic imperative for three enzymes to change the stereochemical configuration of a single carbon in galactose , 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[39]  M. Nishimoto,et al.  Identification of N-Acetylhexosamine 1-Kinase in the Complete Lacto-N-Biose I/Galacto-N-Biose Metabolic Pathway in Bifidobacterium longum , 2007, Applied and Environmental Microbiology.