Identification of direct residue contacts in protein–protein interaction by message passing
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[1] A. Ninfa,et al. Covalent modification of the glnG product, NRI, by the glnL product, NRII, regulates the transcription of the glnALG operon in Escherichia coli. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[2] A. Lesk,et al. Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus. , 1987, Journal of molecular biology.
[3] Norman Margolus,et al. Physics and Computation , 1987 .
[4] M. Mézard,et al. Spin Glass Theory and Beyond , 1987 .
[5] C. Sander,et al. Correlated mutations and residue contacts in proteins , 1994, Proteins.
[6] V. Weiss,et al. A common switch in activation of the response regulators NtrC and PhoB: phosphorylation induces dimerization of the receiver modules. , 1995, The EMBO journal.
[7] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[8] R. Ranganathan,et al. Evolutionarily conserved pathways of energetic connectivity in protein families. , 1999, Science.
[9] W. Atchley,et al. Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis. , 2000, Molecular biology and evolution.
[10] W. Freeman,et al. Generalized Belief Propagation , 2000, NIPS.
[11] J. Hoch,et al. A transient interaction between two phosphorelay proteins trapped in a crystal lattice reveals the mechanism of molecular recognition and phosphotransfer in signal transduction. , 2000, Structure.
[12] Brendan J. Frey,et al. Factor graphs and the sum-product algorithm , 2001, IEEE Trans. Inf. Theory.
[13] Donna R. Maglott,et al. RefSeq and LocusLink: NCBI gene-centered resources , 2001, Nucleic Acids Res..
[14] M. Mézard,et al. Analytic and Algorithmic Solution of Random Satisfiability Problems , 2002, Science.
[15] A. Horovitz,et al. Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations , 2002, Proteins.
[16] Gürol M. Süel,et al. Evolutionarily conserved networks of residues mediate allosteric communication in proteins , 2003, Nature Structural Biology.
[17] N. Isaacs,et al. Crystal Structure of the Response Regulator 02 Receiver Domain, the Essential YycF Two-Component System of Streptococcus pneumoniae in both Complexed and Native States , 2004, Journal of bacteriology.
[18] Tanja Kortemme,et al. Computational design of protein-protein interactions. , 2004, Current opinion in chemical biology.
[19] K. Varughese,et al. Metals in the sporulation phosphorelay: manganese binding by the response regulator Spo0F. , 2004, Acta crystallographica. Section D, Biological crystallography.
[20] D. Baker,et al. Computational redesign of protein-protein interaction specificity , 2004, Nature Structural &Molecular Biology.
[21] R. Aldrich,et al. Influence of conservation on calculations of amino acid covariance in multiple sequence alignments , 2004, Proteins.
[22] M. Vidal,et al. Interactome: gateway into systems biology. , 2005, Human molecular genetics.
[23] Wayne A Hendrickson,et al. Structure of the entire cytoplasmic portion of a sensor histidine‐kinase protein , 2005, The EMBO journal.
[24] Ann M. Stock,et al. Structural Analysis and Solution Studies of the Activated Regulatory Domain of the Response Regulator ArcA: A Symmetric Dimer Mediated by the α4-β5-α5 Face , 2005 .
[25] T. Mascher,et al. Stimulus Perception in Bacterial Signal-Transducing Histidine Kinases , 2006, Microbiology and Molecular Biology Reviews.
[26] Michael Y. Galperin. Structural Classification of Bacterial Response Regulators: Diversity of Output Domains and Domain Combinations , 2006, Journal of bacteriology.
[27] Igor B. Zhulin,et al. MiST: a microbial signal transduction database , 2006, Nucleic Acids Res..
[28] Ann M Stock,et al. Crystal Structures of the Receiver Domain of the Response Regulator PhoP from Escherichia coli in the Absence and Presence of the Phosphoryl Analog Beryllofluoride , 2007, Journal of bacteriology.
[29] Terence Hwa,et al. Features of protein-protein interactions in two-component signaling deduced from genomic libraries. , 2007, Methods in enzymology.
[30] Christopher L. McClendon,et al. Reaching for high-hanging fruit in drug discovery at protein–protein interfaces , 2007, Nature.
[31] M. Laub,et al. Specificity in two-component signal transduction pathways. , 2007, Annual review of genetics.
[32] W. Bialek,et al. Rediscovering the power of pairwise interactions , 2007, 0712.4397.
[33] Yoram Burak,et al. The Origins of Specificity in Polyketide Synthase Protein Interactions , 2007, PLoS Comput. Biol..
[34] C. Schmeisser,et al. Metagenomics, biotechnology with non-culturable microbes , 2007, Applied Microbiology and Biotechnology.
[35] E. van Nimwegen,et al. Accurate Prediction of Protein–protein Interactions from Sequence Alignments Using a Bayesian Method , 2022 .
[36] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[37] T. Hwa,et al. Co-evolving motions at protein-protein interfaces of two-component signaling systems identified by covariance analysis. , 2008, Biochemistry.
[38] Nikos Kyrpides,et al. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..
[39] M. Mézard,et al. Information, Physics, and Computation , 2009 .
[40] I-Min A. Chen,et al. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..
[41] L. Holm,et al. The Pfam protein families database , 2005, Nucleic Acids Res..