Modelling approaches for bio-manufacturing operations.

Fast and cost-effective methods are needed to reduce the time and money needed for drug commercialisation and to determine the risks involved in adopting specific manufacturing strategies. Simulations offer one such approach for exploring design spaces before significant process development is carried out and can be used from the very earliest development stages through to scale-up and optimisation of operating conditions and resource deployment patterns both before and after plant start-up. The advantages this brings in terms of financial savings can be considerable, but to achieve these requires a full appreciation of the complexities of processes and how best to represent them mathematically within the context of in silico software. This chapter provides a summary of some of the work that has been carried out in the areas of mathematical modelling and discrete event simulations for production, recovery and purification operations when designing bio-pharmaceutical processes, looking at both financial and technical modelling.

[1]  Tingyue Gu,et al.  Scale-up of affinity chromatography for purification of enzymes and other proteins , 2003 .

[2]  Mike Hoare,et al.  Characterization of flow intensity in continuous centrifuges for the development of laboratory mimics , 2001 .

[3]  H. P. Williams,et al.  Model Building in Mathematical Programming , 1979 .

[4]  M E Groep,et al.  Performance modeling and simulation of biochemical process sequences with interacting unit operations. , 2000, Biotechnology and bioengineering.

[5]  Daniel G Bracewell,et al.  Demonstration of the use of windows of operation to visualize the effects of fouling on the performance of a chromatographic step , 2011, Biotechnology progress.

[6]  T Shanklin,et al.  Selection of bioprocess simulation software for industrial applications. , 2001, Biotechnology and bioengineering.

[7]  N J Titchener-Hooker,et al.  Simulation of particle size distribution changes occurring during high‐pressure disruption of bakers' yeast , 1996, Biotechnology and bioengineering.

[8]  J A Asenjo,et al.  Process performance models in the optimization of multiproduct protein production plants. , 2001, Biotechnology and bioengineering.

[9]  C L Cooney,et al.  Process simulation for recombinant protein production: cost estimation and sensitivity analysis for heparinase I expressed in Escherichia coli. , 1997, Biotechnology and bioengineering.

[10]  Demetri P. Petrides BioPro designer: an advanced computing environment for modeling and design of integrated biochemical processes , 1994 .

[11]  W. Trösch,et al.  Application of modelling and simulation for optimization of a continuous fermentation process , 1993 .

[12]  San Kiang,et al.  One-dimensional centrifugation model , 2003 .

[13]  Charles M. Ambler The theory of scaling up laboratory data for the sedimentation type centrifuge , 1959 .

[14]  Conan J. Fee,et al.  Economics of wash strategies for expanded bed adsorption of proteins from milk with buoyancy-induced mixing , 2001 .

[15]  Daniel G Bracewell,et al.  Integration of scale-down experimentation and general rate modelling to predict manufacturing scale chromatographic separations. , 2010, Journal of chromatography. A.

[16]  John P. Barford,et al.  An unstructured kinetic model of macromolecular metabolism in batch and fed-batch cultures of hybridoma cells producing monoclonal antibody , 2000 .

[17]  Tingyue Gu,et al.  Mathematical modeling and scale-up of size-exclusion chromatography , 1998 .

[18]  M Hoare,et al.  Scale‐down of continuous filtration for rapid bioprocess design: Recovery and dewatering of protein precipitate suspensions , 2003, Biotechnology and bioengineering.

[19]  N H Holford,et al.  Simulation of clinical trials. , 2000, Annual review of pharmacology and toxicology.

[20]  M. Boychyn,et al.  Performance prediction of industrial centrifuges using scale-down models , 2004, Bioprocess and biosystems engineering.

[21]  Suzanne S. Farid,et al.  Application of quality by design principles to the development and technology transfer of a major process improvement for the manufacture of a recombinant protein , 2011, Biotechnology progress.

[22]  Nigel J. Titchener-Hooker,et al.  Biopharmaceutical process development: Part III, A framework to assist decision making , 2001 .

[23]  Yuhong Zhou,et al.  Application of a Decision‐Support Tool to Assess Pooling Strategies in Perfusion Culture Processes under Uncertainty , 2008, Biotechnology progress.

[24]  Suzanne S Farid,et al.  Decision‐Support Tool for Assessing Biomanufacturing Strategies under Uncertainty: Stainless Steel versus Disposable Equipment for Clinical Trial Material Preparation , 2008, Biotechnology progress.

[25]  G. Carta,et al.  Protein Adsorption on Cation Exchangers: Comparison of Macroporous and Gel‐Composite Media , 1996 .

[26]  Russell W. Workman Simulation of the drug development process: a case study from the pharmaceutical industry , 2000, 2000 Winter Simulation Conference Proceedings (Cat. No.00CH37165).

[27]  P Dunnill,et al.  Prediction of the pilot-scale recovery of a recombinant yeast enzyme using integrated models. , 2001, Biotechnology and bioengineering.

[28]  P. Dunnill,et al.  The performance of a scaled down industrial disc stack centrifuge with a reduced feed material requirement , 1998 .

[29]  Yuhong Zhou,et al.  Biopharmaceutical process development: Part II, Methods of reducing development time , 2001 .

[30]  Gary P. Pisano,et al.  Learning-before-doing in the development of new process technology , 1996 .

[31]  N. J. Titchener-Hooker,et al.  A study of the use of computer simulations for the design of integrated downstream processes , 1997 .

[32]  N. J. Titchener-Hooker,et al.  The use of windows of operation as a bioprocess design tool , 1996 .

[33]  N. J. Titchener-Hooker,et al.  Ranking bioprocess variables using global sensitivity analysis: a case study in centrifugation , 2007, Bioprocess and biosystems engineering.

[34]  Yuhong Zhou,et al.  A decisional-support tool to model the impact of regulatory compliance activities in the biomanufacturing industry , 2004, Comput. Chem. Eng..

[35]  Yuhong Zhou,et al.  A Software Tool to Assist Business‐Process Decision‐Making in the Biopharmaceutical Industry , 2005, Biotechnology progress.

[36]  Anton P. J. Middelberg,et al.  A mathematical model for Escherichia coli debris size reduction during high pressure homogenisation based on grinding theory , 1997 .

[37]  E Keshavarz-Moore,et al.  Ultra scaledown to predict filtering centrifugation of secreted antibody fragments from fungal broth. , 2002, Biotechnology and bioengineering.

[38]  Suzanne S. Farid,et al.  Retrofit Decisions within the Biopharmaceutical Industry: An EBA Case Study , 2006 .

[39]  Anthony N. Godwin,et al.  Enhancing confidence in discrete event simulations , 2001 .

[40]  Y H Zhou,et al.  Visualizing integrated bioprocess designs through "windows of operation". , 1999, Biotechnology and bioengineering.

[41]  S Karri,et al.  A Tool for Modeling Strategic Decisions in Cell Culture Manufacturing , 2000, Biotechnology progress.

[42]  Hemanthram Varadaraju,et al.  Process and economic evaluation for monoclonal antibody purification using a membrane‐only process , 2011, Biotechnology progress.

[43]  Nigel J. Titchener-Hooker,et al.  Visualising bioprocesses using ‘3D-Windows of Operation’ , 2004 .

[44]  Suzanne S Farid,et al.  Combining Multiple Quantitative and Qualitative Goals When Assessing Biomanufacturing Strategies under Uncertainty , 2008, Biotechnology progress.

[45]  Alexandros Koulouris,et al.  Throughput analysis and debottlenecking of biomanufacturing facilities: A job for process simulators , 2002 .