A Plasma Metabolomic Signature Involving Purine Metabolism in Human Optic Atrophy 1 (OPA1)-Related Disorders.

Purpose Dominant optic atrophy (DOA; MIM [Mendelian Inheritance in Man] 165500), resulting in retinal ganglion cell degeneration, is mainly caused by mutations in the optic atrophy 1 (OPA1) gene, which encodes a dynamin guanosine triphosphate (GTP)ase involved in mitochondrial membrane processing. This work aimed at determining whether plasma from OPA1 pathogenic variant carriers displays a specific metabolic signature. Methods We applied a nontargeted clinical metabolomics pipeline based on ultra-high-pressure liquid chromatography coupled to high-resolution mass spectrometry (UHPLC-HRMS) allowing the exploration of 500 polar metabolites in plasma. We compared the plasma metabolic profiles of 25 patients with various OPA1 pathogenic variants and phenotypes to those of 20 healthy controls. Statistical analyses were performed using univariate and multivariate (principal component analysis [PCA], orthogonal partial least-squares discriminant analysis [OPLS-DA]) methods and a machine learning approach, the Biosigner algorithm. Results A robust and relevant predictive model characterizing OPA1 individuals was obtained, based on a complex panel of metabolites with altered concentrations. An impairment of the purine metabolism, including significant differences in xanthine, hypoxanthine, and inosine concentrations, was at the foreground of this signature. In addition, the signature was characterized by differences in urocanate, choline, phosphocholine, glycerate, 1-oleoyl-rac-glycerol, rac-glycerol-1-myristate, aspartate, glutamate, and cystine concentrations. Conclusions This first metabolic signature reported in the plasma of patient carrying OPA1 pathogenic variants highlights the unexpected involvement of purine metabolism in the pathophysiology of DOA.

[1]  J. Grosgeorge,et al.  Nuclear gene OPA1, encoding a mitochondrial dynamin-related protein, is mutated in dominant optic atrophy , 2000, Nature Genetics.

[2]  S. Bhattacharya,et al.  OPA1, encoding a dynamin-related GTPase, is mutated in autosomal dominant optic atrophy linked to chromosome 3q28 , 2000, Nature Genetics.

[3]  E. Zrenner,et al.  OPA1 mutations in patients with autosomal dominant optic atrophy and evidence for semi-dominant inheritance. , 2001, Human molecular genetics.

[4]  B. Lorenz,et al.  Fourteen novel OPA1 mutations in autosomal dominant optic atrophy including two de novo mutations in sporadic optic atrophy , 2003, Human mutation.

[5]  Robert W. Taylor,et al.  Mutation of OPA1 causes dominant optic atrophy with external ophthalmoplegia, ataxia, deafness and multiple mitochondrial DNA deletions: a novel disorder of mtDNA maintenance. , 2008, Brain : a journal of neurology.

[6]  R. Schwarzenbacher,et al.  OPA1 mutations induce mitochondrial DNA instability and optic atrophy 'plus' phenotypes. , 2008, Brain : a journal of neurology.

[7]  D. Milea,et al.  Hereditary optic neuropathies share a common mitochondrial coupling defect , 2008, Annals of neurology.

[8]  F. Dekker,et al.  Confounding: what it is and how to deal with it. , 2008, Kidney international.

[9]  A. Martinuzzi,et al.  Respiratory Complex I Dysfunction Due to Mitochondrial DNA Mutations Shifts the Voltage Threshold for Opening of the Permeability Transition Pore toward Resting Levels* , 2009, Journal of Biological Chemistry.

[10]  Frans M van der Kloet,et al.  Analytical error reduction using single point calibration for accurate and precise metabolomic phenotyping. , 2009, Journal of proteome research.

[11]  D. Milea,et al.  Molecular screening of 980 cases of suspected hereditary optic neuropathy with a report on 77 novel OPA1 mutations , 2009, Human mutation.

[12]  D. Turnbull,et al.  Multi-system neurological disease is common in patients with OPA1 mutations , 2010, Brain : a journal of neurology.

[13]  J. Heymann,et al.  OPA1 disease alleles causing dominant optic atrophy have defects in cardiolipin-stimulated GTP hydrolysis and membrane tubulation , 2010, Human molecular genetics.

[14]  R. Lewis,et al.  Early-onset severe neuromuscular phenotype associated with compound heterozygosity for OPA1 mutations. , 2011, Molecular genetics and metabolism.

[15]  V. Desquiret-Dumas,et al.  Standardized mitochondrial analysis gives new insights into mitochondrial dynamics and OPA1 function. , 2012, The international journal of biochemistry & cell biology.

[16]  D. Milea,et al.  Dominant optic atrophy , 2012, Orphanet Journal of Rare Diseases.

[17]  H. Aburatani,et al.  Nrf2 redirects glucose and glutamine into anabolic pathways in metabolic reprogramming. , 2012, Cancer cell.

[18]  Marni J. Falk,et al.  Mitochondrial respiratory chain disease discrimination by retrospective cohort analysis of blood metabolites. , 2013, Molecular genetics and metabolism.

[19]  M. Larsen,et al.  Sensorineural hearing loss in OPA1-linked disorders. , 2013, Brain : a journal of neurology.

[20]  C. La Morgia,et al.  The optic nerve: A “mito-window” on mitochondrial neurodegeneration , 2013, Molecular and Cellular Neuroscience.

[21]  V. Desquiret-Dumas,et al.  Early-onset Behr syndrome due to compound heterozygous mutations in OPA1. , 2014, Brain : a journal of neurology.

[22]  M. Fasullo,et al.  Nucleotide Salvage Deficiencies, DNA Damage and Neurodegeneration , 2015, International journal of molecular sciences.

[23]  D. Milea,et al.  Improved Locus‐Specific Database for OPA1 Mutations Allows Inclusion of Advanced Clinical Data , 2015, Human mutation.

[24]  M. V. Heiden,et al.  Supporting Aspartate Biosynthesis Is an Essential Function of Respiration in Proliferating Cells , 2015, Cell.

[25]  A. Dinkova-Kostova,et al.  The emerging role of Nrf2 in mitochondrial function , 2015, Free radical biology & medicine.

[26]  S. Tsang,et al.  Phototransduction Influences Metabolic Flux and Nucleotide Metabolism in Mouse Retina* , 2015, The Journal of Biological Chemistry.

[27]  Robert W. Taylor,et al.  Fatal infantile mitochondrial encephalomyopathy, hypertrophic cardiomyopathy and optic atrophy associated with a homozygous OPA1 mutation , 2015, Journal of Medical Genetics.

[28]  E. Thévenot,et al.  Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses. , 2015, Journal of proteome research.

[29]  Jianguo Xia,et al.  Using MetaboAnalyst 3.0 for Comprehensive Metabolomics Data Analysis , 2016, Current protocols in bioinformatics.

[30]  Philippe Rinaudo,et al.  biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data , 2016, Front. Mol. Biosci..

[31]  D. Milea,et al.  OPA1-related disorders: Diversity of clinical expression, modes of inheritance and pathophysiology , 2016, Neurobiology of Disease.

[32]  P. Reynier,et al.  Loss of functional OPA1 unbalances redox state: implications in dominant optic atrophy pathogenesis , 2016, Annals of clinical and translational neurology.

[33]  D. Milea,et al.  The metabolomic signature of Leber's hereditary optic neuropathy reveals endoplasmic reticulum stress. , 2016, Brain : a journal of neurology.

[34]  P. Barboni,et al.  A neurodegenerative perspective on mitochondrial optic neuropathies , 2016, Acta Neuropathologica.

[35]  W. Craigen,et al.  Mitochondrial DNA maintenance defects. , 2017, Biochimica et biophysica acta. Molecular basis of disease.

[36]  D. Milea,et al.  Targeted Metabolomics Reveals Early Dominant Optic Atrophy Signature in Optic Nerves of Opa1delTTAG/+ Mice. , 2017, Investigative ophthalmology & visual science.

[37]  D. Bonneau,et al.  A Nontargeted UHPLC-HRMS Metabolomics Pipeline for Metabolite Identification: Application to Cardiac Remote Ischemic Preconditioning. , 2017, Analytical chemistry.