Light Sheet Microscopy for Single Molecule Tracking in Living Tissue

Single molecule observation in cells and tissue allows the analysis of physiological processes with molecular detail, but it still represents a major methodological challenge. Here we introduce a microscopic technique that combines light sheet optical sectioning microscopy and ultra sensitive high-speed imaging. By this approach it is possible to observe single fluorescent biomolecules in solution, living cells and even tissue with an unprecedented speed and signal-to-noise ratio deep within the sample. Thereby we could directly observe and track small and large tracer molecules in aqueous solution. Furthermore, we demonstrated the feasibility to visualize the dynamics of single tracer molecules and native messenger ribonucleoprotein particles (mRNPs) in salivary gland cell nuclei of Chironomus tentans larvae up to 200 µm within the specimen with an excellent signal quality. Thus single molecule light sheet based fluorescence microscopy allows analyzing molecular diffusion and interactions in complex biological systems.

[1]  W E Moerner,et al.  Single-molecule spectroscopy and imaging of biomolecules in living cells. , 2010, Analytical chemistry.

[2]  Philipp J. Keller,et al.  Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy , 2008, Science.

[3]  Joris J J Dirckx,et al.  Design and quantitative resolution measurements of an optical virtual sectioning three-dimensional imaging technique for biomedical specimens, featuring two-micrometer slicing resolution. , 2007, Journal of biomedical optics.

[4]  Felix Koberling,et al.  Precise measurement of diffusion by multi-color dual-focus fluorescence correlation spectroscopy , 2008 .

[5]  B. Daneholt,et al.  The size of the transcription unit in Balbiani ring 2 of Chironomus tentans as derived from analysis of the primary transcript and 75 S RNA. , 1978, Journal of molecular biology.

[6]  D. Stainier,et al.  High-speed imaging of developing heart valves reveals interplay of morphogenesis and function , 2008, Development.

[7]  T. Holy,et al.  Fast Three-Dimensional Fluorescence Imaging of Activity in Neural Populations by Objective-Coupled Planar Illumination Microscopy , 2008, Neuron.

[8]  F. Del Bene,et al.  Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy , 2004, Science.

[9]  W. Webb,et al.  Precise nanometer localization analysis for individual fluorescent probes. , 2002, Biophysical journal.

[10]  R. Kikuchi Heisenberg's model of ferro- and antiferromagnetism , 1958 .

[11]  H. Spaink,et al.  Single-molecule microscopy reveals membrane microdomain organization of cells in a living vertebrate. , 2009, Biophysical journal.

[12]  V. Buschmann,et al.  Direct observation of single protein molecules in aqueous solution. , 2006, Chemphyschem : a European journal of chemical physics and physical chemistry.

[13]  E. Isacoff,et al.  Subunit counting in membrane-bound proteins , 2007, Nature Methods.

[14]  H. Leonhardt,et al.  Discontinuous movement of mRNP particles in nucleoplasmic regions devoid of chromatin , 2008, Proceedings of the National Academy of Sciences.

[15]  A. Schierloh,et al.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain , 2007, Nature Methods.

[16]  Jan Huisken,et al.  Selective plane illumination microscopy techniques in developmental biology , 2009, Development.

[17]  Michael Liebling,et al.  Fast fluorescence microscopy for imaging the dynamics of embryonic development , 2008, HFSP journal.

[18]  F. Crick,et al.  Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid , 1974, Nature.

[19]  V. Ermolayev,et al.  Ultramicroscopy reveals axonal transport impairments in cortical motor neurons at prion disease. , 2009, Biophysical journal.

[20]  D H Burns,et al.  Orthogonal‐plane fluorescence optical sectioning: Three‐dimensional imaging of macroscopic biological specimens , 1993, Journal of microscopy.

[21]  M. Tokunaga,et al.  Highly inclined thin illumination enables clear single-molecule imaging in cells , 2008, Nature Methods.

[22]  T. Kues,et al.  Visualization and tracking of single protein molecules in the cell nucleus. , 2001, Biophysical journal.

[23]  Ulrich Kubitscheck,et al.  High-contrast single-particle tracking by selective focal plane illumination microscopy. , 2008, Optics express.

[24]  S. Hovmöller,et al.  The average atomic volume and density of proteins , 1998 .

[25]  E. Kiseleva,et al.  A Pre-mRNA-Binding Protein Accompanies the RNA from the Gene through the Nuclear Pores and into Polysomes , 1996, Cell.

[26]  T. Wagner,et al.  Detection of single quantum dots in model organisms with sheet illumination microscopy. , 2009, Biochemical and biophysical research communications.

[27]  D. Axelrod Cell-substrate contacts illuminated by total internal reflection fluorescence , 1981, The Journal of cell biology.

[28]  P. Lichter,et al.  Macromolecular crowding and its potential impact on nuclear function. , 2008, Biochimica et biophysica acta.

[29]  L. Wieslander The Balbiani ring multigene family: coding repetitive sequences and evolution of a tissue-specific cell function. , 1994, Progress in nucleic acid research and molecular biology.

[30]  Ulrich Kubitscheck,et al.  High intranuclear mobility and dynamic clustering of the splicing factor U1 snRNP observed by single particle tracking , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[31]  B. Daneholt Packing and delivery of a genetic message , 2001, Chromosoma.

[32]  S. Masich,et al.  The intranuclear movement of Balbiani ring premessenger ribonucleoprotein particles. , 1999, Experimental cell research.

[33]  E. Kiseleva,et al.  Identification of two RNA-binding proteins in Balbiani ring premessenger ribonucleoprotein granules and presence of these proteins in specific subsets of heterogeneous nuclear ribonucleoprotein particles , 1996, Molecular and cellular biology.

[34]  Sebastian Y Bednarek,et al.  Variable-angle epifluorescence microscopy: a new way to look at protein dynamics in the plant cell cortex. , 2008, The Plant journal : for cell and molecular biology.

[35]  H. Dodt,et al.  3D-reconstruction of blood vessels by ultramicroscopy , 2009, Organogenesis.

[36]  H. Siedentopf,et al.  Uber Sichtbarmachung und Größenbestimmung ultramikoskopischer Teilchen, mit besonderer Anwendung auf Goldrubingläser , 1902 .

[37]  F. Crick,et al.  Molecular structure of nucleic acids , 2004, JAMA.

[38]  H. Berg Random Walks in Biology , 2018 .

[39]  P. Lichter,et al.  Histone acetylation increases chromatin accessibility , 2005, Journal of Cell Science.

[40]  B. Daneholt,et al.  Assembly and transport of a premessenger RNP particle , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Joris J J Dirckx,et al.  Tomographic imaging of macroscopic biomedical objects in high resolution and three dimensions using orthogonal-plane fluorescence optical sectioning. , 2009, Applied optics.

[42]  Hans-Ulrich Dodt,et al.  Resolution of Ultramicroscopy and Field of View Analysis , 2009, PloS one.