Gene expression phenotype in heterozygous carriers of ataxia telangiectasia.

The defining characteristic of recessive diseases is the absence of a phenotype in the heterozygous carriers. Nonetheless, subtle manifestations may be detectable by new methods, such as expression profiling. Ataxia telangiectasia (AT) is a typical recessive disease, and individual carriers cannot be reliably identified. As a group, however, carriers of an AT disease allele have been reported to have a phenotype that distinguishes them from normal control individuals: increased radiosensitivity and risk of cancer. We show here that the phenotype is also detectable, in lymphoblastoid cells from AT carriers, as changes in expression level of many genes. The differences are manifested both in baseline expression levels and in response to ionizing radiation. Our findings show that carriers of a recessive disease may have an "expression phenotype." In the particular case of AT, this suggests a new approach to the identification of carriers and enhances understanding of their increased cancer risk. More generally, we demonstrate that genomic technologies offer the opportunity to identify and study unaffected carriers, who are hundreds of times more common than affected patients.

[1]  F. McKeon,et al.  Human wee1 maintains mitotic timing by protecting the nucleus from cytoplasmically activated cdc2 kinase , 1993, Cell.

[2]  M. Lovett,et al.  A single ataxia telangiectasia gene with a product similar to PI-3 kinase. , 1995, Science.

[3]  J. Klijn,et al.  ATM-heterozygous germline mutations contribute to breast cancer-susceptibility. , 2000, American journal of human genetics.

[4]  R. Gatti,et al.  Diversity of ATM gene mutations detected in patients with ataxia‐telangiectasia , 1997, Human mutation.

[5]  A. Lindblom,et al.  The role of ataxia-telangiectasia heterozygotes in familial breast cancer. , 1998, Cancer research.

[6]  M. Skolnick,et al.  The incidence and gene frequency of ataxia-telangiectasia in the United States. , 1986, American journal of human genetics.

[7]  John C. Lee,et al.  Identification of Mitogen-activated Protein (MAP) Kinase-activated Protein Kinase-3, a Novel Substrate of CSBP p38 MAP Kinase (*) , 1996, The Journal of Biological Chemistry.

[8]  D. Baltimore,et al.  Dual roles of ATM in the cellular response to radiation and in cell growth control. , 1996, Genes & development.

[9]  K. Isselbacher,et al.  Heterozygous ATM mutations do not contribute to early onset of breast cancer , 1997, Nature Genetics.

[10]  D Morrell,et al.  Incidence of cancer in 161 families affected by ataxia-telangiectasia. , 1991, The New England journal of medicine.

[11]  H. Ochs,et al.  A high frequency of distinct ATM gene mutations in ataxia-telangiectasia. , 1996, American journal of human genetics.

[12]  T. Stamato,et al.  Glucose-6-phosphate Dehydrogenase and the Oxidative Pentose Phosphate Cycle Protect Cellsagainst Apoptosis Induced by Low Doses of Ionizing Radiation , 2000 .

[13]  S. Dudoit,et al.  Microarray expression profiling identifies genes with altered expression in HDL-deficient mice. , 2000, Genome research.

[14]  V. F. Liu,et al.  The ionizing radiation-induced replication protein A phosphorylation response differs between ataxia telangiectasia and normal human cells , 1993, Molecular and cellular biology.

[15]  G. A. Whitmore,et al.  Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Christian A. Rees,et al.  Molecular portraits of human breast tumours , 2000, Nature.

[17]  Y. Shiloh,et al.  Ataxia-telangiectasia: mutations in ATM cDNA detected by protein-truncation screening. , 1996, American journal of human genetics.

[18]  T. Stamato,et al.  Glucose-6-phosphate dehydrogenase and the oxidative pentose phosphate cycle protect cells against apoptosis induced by low doses of ionizing radiation. , 2000, Radiation research.

[19]  J. Mesirov,et al.  Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. , 1999, Science.

[20]  D. Roberts,et al.  Regulation of tumor growth and metastasis by thrombospondin‐1 , 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[21]  Ash A. Alizadeh,et al.  Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling , 2000, Nature.

[22]  Wen‐Ming Yang,et al.  Histone Deacetylases Specifically Down-regulate p53-dependent Gene Activation* , 2000, The Journal of Biological Chemistry.

[23]  R. Tibshirani,et al.  Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[24]  Sara G. Becker-Catania,et al.  Ataxia-telangiectasia: phenotype/genotype studies of ATM protein expression, mutations, and radiosensitivity. , 2000, Molecular genetics and metabolism.

[25]  R. Cowan,et al.  A comparison of the radiosensitivity of lymphocytes from normal donors, cancer patients, individuals with ataxia-telangiectasia (A-T) and A-T heterozygotes. , 1995, International journal of radiation biology.

[26]  N. Sampas,et al.  Molecular classification of cutaneous malignant melanoma by gene expression profiling , 2000, Nature.

[27]  T. Naka,et al.  Cloning and functional analysis of new members of STAT induced STAT inhibitor (SSI) family: SSI-2 and SSI-3. , 1997, Biochemical and biophysical research communications.

[28]  Christina Kendziorski,et al.  On Differential Variability of Expression Ratios: Improving Statistical Inference about Gene Expression Changes from Microarray Data , 2001, J. Comput. Biol..

[29]  M. Swift,et al.  Molecular genotyping shows that ataxia-telangiectasia heterozygotes are predisposed to breast cancer. , 1996, Cancer genetics and cytogenetics.

[30]  M. Swift,et al.  Malignant neoplasms in the families of patients with ataxia-telangiectasia. , 1976, Cancer research.

[31]  B. Manly Randomization, Bootstrap and Monte Carlo Methods in Biology , 2018 .

[32]  A. Schäffer,et al.  Atm haploinsufficiency results in increased sensitivity to sublethal doses of ionizing radiation in mice , 1999, Nature Genetics.

[33]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[34]  T. Sakai,et al.  Thioredoxin-dependent Redox Regulation of p53-mediated p21 Activation* , 1999, The Journal of Biological Chemistry.