Merging Plastics, Microbes, and Enzymes: Highlights from an International Workshop

In the Anthropocene, plastic pollution is a worldwide concern that must be tackled from different viewpoints, bringing together different areas of science. Microbial transformation of polymers is a broad-spectrum research topic that has become a keystone in the circular economy of fossil-based and biobased plastics. ABSTRACT In the Anthropocene, plastic pollution is a worldwide concern that must be tackled from different viewpoints, bringing together different areas of science. Microbial transformation of polymers is a broad-spectrum research topic that has become a keystone in the circular economy of fossil-based and biobased plastics. To have an open discussion about these themes, experts in the synthesis of polymers and biodegradation of lignocellulose and plastics convened within the framework of The Transnational Network for Research and Innovation in Microbial Biodiversity, Enzymes Technology and Polymer Science (MENZYPOL-NET), which was recently created by early-stage scientists from Colombia and Germany. In this context, the international workshop “Microbial Synthesis and Degradation of Polymers: Toward a Sustainable Bioeconomy” was held on 27 September 2021 via Zoom. The workshop was divided into two sections, and questions were raised for discussion with panelists and expert guests. Several key points and relevant perspectives were delivered, mainly related to (i) the microbial evolution driven by plastic pollution; (ii) the relevance of and interplay between polymer structure/composition, enzymatic mechanisms, and assessment methods in plastic biodegradation; (iii) the recycling and valorization of plastic waste; (iv) engineered plastic-degrading enzymes; (v) the impact of (micro)plastics on environmental microbiomes; (vi) the isolation of plastic-degrading (PD) microbes and design of PD microbial consortia; and (vii) the synthesis and applications of biobased plastics. Finally, research priorities from these key points were identified within the microbial, enzyme, and polymer sciences.

[1]  A. D. Vethaak,et al.  Discovery and quantification of plastic particle pollution in human blood. , 2022, Environment international.

[2]  Christoffel P. S. Badenhorst,et al.  Mechanism-Based Design of Efficient PET Hydrolases , 2022, ACS catalysis.

[3]  Patrick C. F. Buchholz,et al.  Plastics degradation by hydrolytic enzymes: The plastics‐active enzymes database—PAZy , 2022, Proteins.

[4]  A. Koelmans,et al.  Risk assessment of microplastic particles , 2022, Nature Reviews Materials.

[5]  R. Langer,et al.  Bioplastics for a circular economy , 2022, Nature Reviews Materials.

[6]  Bingzhi Li,et al.  Evaluation of PET Degradation Using Artificial Microbial Consortia , 2021, Frontiers in Microbiology.

[7]  Suren Singh,et al.  Environmental Impacts of Microplastics and Nanoplastics: A Current Overview , 2021, Frontiers in Microbiology.

[8]  Patrick C. F. Buchholz,et al.  Plastics degradation by hydrolytic enzymes: The plastics‐active enzymes database—PAZy , 2021, Proteins.

[9]  N. Wierckx,et al.  The metabolic potential of plastics as biotechnological carbon sources - Review and targets for the future. , 2021, Metabolic engineering.

[10]  T. Boekhout,et al.  The Potential Role of Marine Fungi in Plastic Degradation – A Review , 2021, Frontiers in Marine Science.

[11]  D. Jiménez,et al.  Top-Down Enrichment Strategy to Co-cultivate Lactic Acid and Lignocellulolytic Bacteria From the Megathyrsus maximus Phyllosphere , 2021, Frontiers in Microbiology.

[12]  M. A. Egorova,et al.  Microbial Degradation of Plastics and Approaches to Make it More Efficient , 2021, Microbiology.

[13]  Xuehua Zou,et al.  Biodegradable microplastics (BMPs): a new cause for concern? , 2021, Environmental Science and Pollution Research.

[14]  N. Wierckx,et al.  MIXed plastics biodegradation and UPcycling using microbial communities: EU Horizon 2020 project MIX-UP started January 2020 , 2021, Environmental Sciences Europe.

[15]  M. Kornaros,et al.  Plastic wastes biodegradation: Mechanisms, challenges and future prospects. , 2021, The Science of the total environment.

[16]  S. Brar,et al.  Biodegradation of microplastics: Better late than never. , 2021, Chemosphere.

[17]  Ling Tao,et al.  Techno-economic, life-cycle, and socioeconomic impact analysis of enzymatic recycling of poly(ethylene terephthalate) , 2021 .

[18]  P. Phale,et al.  Conserved Metabolic and Evolutionary Themes in Microbial Degradation of Carbamate Pesticides , 2021, Frontiers in Microbiology.

[19]  W. Cornwall The plastic eaters. , 2021, Science.

[20]  G. Guebitz,et al.  Together Is Better: The Rumen Microbial Community as Biological Toolbox for Degradation of Synthetic Polyesters , 2021, Frontiers in Bioengineering and Biotechnology.

[21]  Q. Qi,et al.  Potential one-step strategy for PET degradation and PHB biosynthesis through co-cultivation of two engineered microorganisms , 2021, Engineering Microbiology.

[22]  H. Arp,et al.  The global threat from plastic pollution , 2021, Science.

[23]  R. Andrades,et al.  Plastic ingestion as an evolutionary trap: Toward a holistic understanding , 2021, Science.

[24]  Md Ariful Haque,et al.  Biotechnology of Plastic Waste Degradation, Recycling, and Valorization: Current Advances and Future Perspectives. , 2021, ChemSusChem.

[25]  G. Gerdts,et al.  Cross-Hemisphere Study Reveals Geographically Ubiquitous, Plastic-Specific Bacteria Emerging from the Rare and Unexplored Biosphere , 2021, mSphere.

[26]  Nikolina Atanasova,et al.  Plastic Degradation by Extremophilic Bacteria , 2021, International journal of molecular sciences.

[27]  Jaewook Myung,et al.  Bridging Three Gaps in Biodegradable Plastics: Misconceptions and Truths About Biodegradation , 2021, Frontiers in Chemistry.

[28]  Xiaozhi Lim Microplastics are everywhere — but are they harmful? , 2021, Nature.

[29]  P. Wick,et al.  Placing nanoplastics in the context of global plastic pollution , 2021, Nature Nanotechnology.

[30]  N. Wierckx,et al.  Towards bio-upcycling of polyethylene terephthalate. , 2021, Metabolic engineering.

[31]  U. Hentschel,et al.  Enhancing Microbial Pollutant Degradation by Integrating Eco-Evolutionary Principles with Environmental Biotechnology. , 2021, Trends in microbiology.

[32]  S. Chakraborty,et al.  Bioplastic from Renewable Biomass: A Facile Solution for a Greener Environment , 2021, Earth Systems and Environment.

[33]  Callum C. Banfield,et al.  The microplastisphere: Biodegradable microplastics addition alters soil microbial community structure and function , 2021, Soil Biology and Biochemistry.

[34]  Caicai Xu,et al.  New Insights into the Microplastic Enrichment in the Blue Carbon Ecosystem: Evidence from Seagrass Meadows and Mangrove Forests in Coastal South China Sea. , 2021, Environmental science & technology.

[35]  Na Wei,et al.  Enzyme Discovery and Engineering for Sustainable Plastic Recycling. , 2021, Trends in biotechnology.

[36]  H. Hasan,et al.  Microbial degradation of microplastics by enzymatic processes: a review , 2021, Environmental Chemistry Letters.

[37]  O. Pantos,et al.  Plastics and the microbiome: impacts and solutions , 2021, Environmental Microbiome.

[38]  O. Pantos,et al.  Phylogenetic Distribution of Plastic-Degrading Microorganisms , 2021, mSystems.

[39]  Graham M. Hughes,et al.  Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates , 2021, Microbial biotechnology.

[40]  A. Vaksmaa,et al.  Microbial Degradation of Marine Plastics: Current State and Future Prospects , 2021, Biotechnology for Sustainable Environment.

[41]  B. Öztürk,et al.  Exploring microbial consortia from various environments for plastic degradation. , 2021, Methods in enzymology.

[42]  A. Zelezniak,et al.  Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends , 2020, bioRxiv.

[43]  D. Levin,et al.  Microbial and Enzymatic Degradation of Synthetic Plastics , 2020, Frontiers in Microbiology.

[44]  Ji-Dong Gu,et al.  Biodegradability of plastics: the issues, recent advances, and future perspectives , 2020, Environmental Science and Pollution Research.

[45]  N. Jehmlich,et al.  Synergistic biodegradation of aromatic-aliphatic copolyester plastic by a marine microbial consortium , 2020, Nature Communications.

[46]  T. Walker,et al.  Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere , 2020, The ISME Journal.

[47]  J. Gilbert,et al.  Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems , 2020, mSystems.

[48]  K. O’Connor,et al.  Possibilities and limitations of biotechnological plastic degradation and recycling , 2020, Nature Catalysis.

[49]  T. Gojobori,et al.  Rapid Evolution of Plastic-degrading Enzymes Prevalent in the Global Ocean , 2020, bioRxiv.

[50]  K. Kasuya,et al.  Biodegradability of poly(3-hydroxyalkanoate) and poly(ε-caprolactone) via biological carbon cycles in marine environments , 2020, Polymer Journal.

[51]  A. Lendlein,et al.  Influence of Depolymerases and Lipases on the Degradation of Polyhydroxyalkanoates Determined in Langmuir Degradation Studies , 2020, Advanced Materials Interfaces.

[52]  D. Jiménez,et al.  Exploring the Lignin Catabolism Potential of Soil-Derived Lignocellulolytic Microbial Consortia by a Gene-Centric Metagenomic Approach , 2020, Microbial Ecology.

[53]  J. Wood,et al.  Recycling of Bioplastics: Routes and Benefits , 2020, Journal of Polymers and the Environment.

[54]  C. Reddy,et al.  Opinion: We need better data about the environmental persistence of plastic goods , 2020, Proceedings of the National Academy of Sciences.

[55]  Jyotika Purohit,et al.  Metagenomic Exploration of Plastic Degrading Microbes for Biotechnological Application , 2020, Current genomics.

[56]  S. Duquesne,et al.  An engineered PET depolymerase to break down and recycle plastic bottles , 2020, Nature.

[57]  E. Lichtfouse,et al.  Removal of microplastics from the environment. A review , 2020, Environmental Chemistry Letters.

[58]  B. Cassone,et al.  Role of the intestinal microbiome in low-density polyethylene degradation by caterpillar larvae of the greater wax moth, Galleria mellonella , 2020, Proceedings of the Royal Society B.

[59]  Chun-Chi Chen,et al.  Enzymatic degradation of plant biomass and synthetic polymers , 2020, Nature Reviews Chemistry.

[60]  Lisa R. Moore,et al.  How will marine plastic pollution affect bacterial primary producers? , 2020, Communications Biology.

[61]  S. Suh,et al.  Degradation Rates of Plastics in the Environment , 2020 .

[62]  Kevin E. O’Connor,et al.  Bio-based and biodegradable polymers - State-of-the-art, challenges and emerging trends , 2020 .

[63]  L. Amaral-Zettler,et al.  Ecology of the plastisphere , 2020, Nature Reviews Microbiology.

[64]  T. Bugg,et al.  Bacterial enzymes for lignin depolymerisation: new biocatalysts for generation of renewable chemicals from biomass. , 2020, Current opinion in chemical biology.

[65]  A. Lendlein,et al.  Unraveling the interplay between abiotic hydrolytic degradation and crystallization of bacterial polyesters comprising short and medium side-chain length polyhydroxyalkanoates. , 2019, Biomacromolecules.

[66]  Mengli Xia,et al.  Biodegradation and mineralization of polystyrene by plastic-eating superworms Zophobas atratus. , 2019, The Science of the total environment.

[67]  Oldamur Hollóczki,et al.  Can Nanoplastics Alter Cell Membranes? , 2019, Chemphyschem : a European journal of chemical physics and physical chemistry.

[68]  W. Streit,et al.  Plastics: Environmental and Biotechnological Perspectives on Microbial Degradation , 2019, Applied and Environmental Microbiology.

[69]  M. Rillig,et al.  Evolutionary implications of microplastics for soil biota. , 2019, Environmental chemistry.

[70]  H. Ismail,et al.  A review on tensile and morphological properties of poly (lactic acid) (PLA)/ thermoplastic starch (TPS) blends , 2019, Polymer-Plastics Technology and Materials.

[71]  Sang Yup Lee,et al.  Rational Protein Engineering of Thermo-Stable PETase from Ideonella sakaiensis for Highly Efficient PET Degradation , 2019, ACS Catalysis.

[72]  Zhiqiang Gan,et al.  PMBD: a Comprehensive Plastics Microbial Biodegradation Database , 2019, Database J. Biol. Databases Curation.

[73]  A. Lendlein,et al.  Langmuir Monolayers as Tools to Study Biodegradable Polymer Implant Materials. , 2018, Macromolecular rapid communications.

[74]  P. Lant,et al.  The Role of Biodegradable Plastic in Solving Plastic Solid Waste Accumulation , 2019, Plastics to Energy.

[75]  Manjusri Misra,et al.  Composites from renewable and sustainable resources: Challenges and innovations , 2018, Science.

[76]  Tanja Narancic,et al.  Biodegradable Plastic Blends Create New Possibilities for End-of-Life Management of Plastics but They Are Not a Panacea for Plastic Pollution. , 2018, Environmental science & technology.

[77]  A. Schintlmeister,et al.  Biodegradation of synthetic polymers in soils: Tracking carbon into CO2 and microbial biomass , 2018, Science Advances.

[78]  Deli Chen,et al.  An overview of microplastic and nanoplastic pollution in agroecosystems. , 2018, The Science of the total environment.

[79]  H. Grossart,et al.  Microplastic pollution increases gene exchange in aquatic ecosystems. , 2018, Environmental pollution.

[80]  A. Pelacho,et al.  Biodegradable Plastic Mulch Films: Impacts on Soil Microbial Communities and Ecosystem Functions , 2018, Front. Microbiol..

[81]  X. Álvarez‐Salgado,et al.  Dissolved organic carbon leaching from plastics stimulates microbial activity in the ocean , 2018, Nature Communications.

[82]  S. Skariyachan,et al.  Enhanced polymer degradation of polyethylene and polypropylene by novel thermophilic consortia of Brevibacillus sps. and Aneurinibacillus sp. screened from waste management landfills and sewage treatment plants , 2018 .

[83]  Ren Wei,et al.  New Insights into the Function and Global Distribution of Polyethylene Terephthalate (PET)-Degrading Bacteria and Enzymes in Marine and Terrestrial Metagenomes , 2018, Applied and Environmental Microbiology.

[84]  C. U. Emenike,et al.  Screening of Bacillus strains isolated from mangrove ecosystems in Peninsular Malaysia for microplastic degradation. , 2017, Environmental pollution.

[85]  X. Duan,et al.  High-level expression and characterization of a novel cutinase from Malbranchea cinnamomea suitable for butyl butyrate production , 2017, Biotechnology for Biofuels.

[86]  R. Geyer,et al.  Production, use, and fate of all plastics ever made , 2017, Science Advances.

[87]  Jeannette M. García,et al.  Chemical recycling of waste plastics for new materials production , 2017 .

[88]  D. Hui,et al.  Recycling of plastic solid waste: A state of art review and future applications , 2017 .

[89]  Ren Wei,et al.  Biocatalysis as a green route for recycling the recalcitrant plastic polyethylene terephthalate , 2017, Microbial biotechnology.

[90]  Ren Wei,et al.  Microbial enzymes for the recycling of recalcitrant petroleum‐based plastics: how far are we? , 2017, Microbial biotechnology.

[91]  Navneet,et al.  Review on the current status of polymer degradation: a microbial approach , 2017, Bioresources and Bioprocessing.

[92]  Y. Kimura,et al.  A bacterium that degrades and assimilates poly(ethylene terephthalate) , 2016, Science.

[93]  A. Prieto,et al.  A holistic view of polyhydroxyalkanoate metabolism in Pseudomonas putida. , 2016, Environmental microbiology.

[94]  B. D. Hardesty,et al.  Threat of plastic pollution to seabirds is global, pervasive, and increasing , 2015, Proceedings of the National Academy of Sciences.

[95]  D. Jiménez,et al.  Compositional profile of α / β-hydrolase fold proteins in mangrove soil metagenomes , 2015 .

[96]  Xingxun Liu,et al.  Accelerating the degradation of polyolefins through additives and blending , 2014 .

[97]  D. Jiménez,et al.  Novel multispecies microbial consortia involved in lignocellulose and 5-hydroxymethylfurfural bioconversion , 2014, Applied Microbiology and Biotechnology.

[98]  L. Amaral-Zettler,et al.  Life in the "plastisphere": microbial communities on plastic marine debris. , 2013, Environmental science & technology.

[99]  Craig S Criddle,et al.  Cradle-to-gate life cycle assessment for a cradle-to-cradle cycle: biogas-to-bioplastic (and back). , 2012, Environmental science & technology.

[100]  C. Lott,et al.  Laboratory Test Methods to Determine the Degradation of Plastics in Marine Environmental Conditions , 2012, Front. Microbio..

[101]  A. Chiralt,et al.  Edible and Biodegradable Starch Films: A Review , 2012, Food and Bioprocess Technology.

[102]  F. Schué,et al.  Terminology for biorelated polymers and applications (IUPAC Recommendations 2012) , 2012 .

[103]  E. Kanaya,et al.  Isolation of a Novel Cutinase Homolog with Polyethylene Terephthalate-Degrading Activity from Leaf-Branch Compost by Using a Metagenomic Approach , 2011, Applied and Environmental Microbiology.

[104]  Maureen A. O’Malley 'Everything is everywhere: but the environment selects': ubiquitous distribution and ecological determinism in microbial biogeography. , 2008, Studies in history and philosophy of biological and biomedical sciences.

[105]  R. De Wit,et al.  'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say? , 2006, Environmental microbiology.