iSMART: An Integrated Cloud Computing Web Server for Traditional Chinese Medicine for Online Virtual Screening, de novo Evolution and Drug Design

(2011). iSMART: An Integrated Cloud Computing Web Server for Traditional Chinese Medicine for Online Virtual Screening, de novo Evolution and Drug Design. Journal of Biomolecular Structure and Dynamics: Vol. 29, No. 1, pp. 243-250.

[1]  Calvin Yu-Chian Chen,et al.  Virtual Screening and Drug Design for PDE-5 Receptor from Traditional Chinese Medicine Database , 2010, Journal of biomolecular structure & dynamics.

[2]  Ping Li,et al.  [Application of systems biology method in the research of traditional Chinese medicine]. , 2008, Zhong xi yi jie he xue bao = Journal of Chinese integrative medicine.

[3]  John D. Lafferty,et al.  Statistical Models for Text Segmentation , 1999, Machine Learning.

[4]  Calvin Yu-Chian Chen,et al.  TCM Database@Taiwan: The World's Largest Traditional Chinese Medicine Database for Drug Screening In Silico , 2011, PloS one.

[5]  Hung-Jin Huang,et al.  Structure-Based and Ligand-Based Drug Design for HER 2 Receptor , 2010, Journal of biomolecular structure & dynamics.

[6]  Thomas Stützle,et al.  Empirical Scoring Functions for Advanced Protein-Ligand Docking with PLANTS , 2009, J. Chem. Inf. Model..

[7]  G. Labesse,et al.  LEA3D: a computer-aided ligand design for structure-based drug design. , 2005, Journal of medicinal chemistry.

[8]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[9]  T. Ramalho,et al.  Molecular Modeling of Mycobacterium Tuberculosis DNA Gyrase and its Molecular Docking Study with Gatifloxacin Inhibitors , 2010, Journal of biomolecular structure & dynamics.

[10]  Kuan-Chung Chen,et al.  Stroke prevention by traditional Chinese medicine? A genetic algorithm, support vector machine and molecular dynamics approach , 2011 .

[11]  R Sowdhamini,et al.  100 ns Molecular Dynamics Simulations to Study Intramolecular Conformational Changes in Bax , 2010, Journal of biomolecular structure & dynamics.

[12]  A. Andrianov,et al.  Immunophilins and HIV-1 V3 Loop For Structure-Based Anti-AIDS Drug Design , 2009, Journal of biomolecular structure & dynamics.

[13]  Ivan Anishchenko,et al.  Computational Model of the HIV-1 Subtype A V3 Loop: Study on the Conformational Mobility for Structure-Based Anti-AIDS Drug Design , 2009, Journal of biomolecular structure & dynamics.

[14]  Mattia Falconi,et al.  Docking Simulation and Competitive Experiments Validate the Interaction Between the 2,5-Xylidine Inhibitor and Rigidoporus lignosus Laccase , 2010, Journal of biomolecular structure & dynamics.

[15]  R. Witkamp,et al.  Metabolomics in the context of systems biology: bridging traditional Chinese medicine and molecular pharmacology , 2005, Phytotherapy research : PTR.

[16]  Hung-Jin Huang,et al.  A Novel Strategy for Designing the Selective PPAR Agonist by the “Sum of Activity” Model , 2010, Journal of biomolecular structure & dynamics.

[17]  Hung-Jin Huang,et al.  Ligand-Based Dual Target Drug Design for H1N1: Swine Flu- A Preliminary First Study , 2009, Journal of biomolecular structure & dynamics.

[18]  Evandro P. Semighini,et al.  Computer-aided Drug Design of Novel PLA2 Inhibitor Candidates for Treatment of Snakebite , 2009, Journal of biomolecular structure & dynamics.

[19]  V. McKusick Mendelian Inheritance in Man and Its Online Version, OMIM , 2007, The American Journal of Human Genetics.

[20]  Susumu Goto,et al.  KEGG for representation and analysis of molecular networks involving diseases and drugs , 2009, Nucleic Acids Res..

[21]  Kinji Ohno,et al.  In vitro and in silico analysis reveals an efficient algorithm to predict the splicing consequences of mutations at the 5′ splice sites , 2007, Nucleic acids research.

[22]  Sudeep Roy,et al.  Molecular Docking Studies to Map the Binding Site of Squalene Synthase Inhibitors on Dehydrosqualene Synthase of Staphylococcus Aureus , 2010, Journal of biomolecular structure & dynamics.

[23]  Timothy Hagen,et al.  Design of phosphodiesterase 4D (PDE4D) allosteric modulators for enhancing cognition with improved safety , 2010, Nature Biotechnology.

[24]  Hung-Jin Huang,et al.  Key Features for Designing Phosphodiesterase-5 Inhibitors , 2010, Journal of biomolecular structure & dynamics.