Microbiota Characterization of Agricultural Green Waste-Based Suppressive Composts Using Omics and Classic Approaches
暂无分享,去创建一个
R. Finn | A. Mitchell | R. Scotti | M. Zaccardelli | C. Pane
[1] Synan F. AbuQamar,et al. Biological Control of Mango Dieback Disease Caused by Lasiodiplodia theobromae Using Streptomycete and Non-streptomycete Actinobacteria in the United Arab Emirates , 2018, Front. Microbiol..
[2] U. Abdelmohsen,et al. Natural Product Potential of the Genus Nocardiopsis , 2018, Marine drugs.
[3] D. Giovanardi,et al. Plant Growth Promoting and Biocontrol Activity of Streptomyces spp. as Endophytes , 2018, International journal of molecular sciences.
[4] Robert D. Finn,et al. EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies , 2017, Nucleic Acids Res..
[5] Natalia N. Ivanova,et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea , 2017, Nature Biotechnology.
[6] P. Pevzner,et al. metaSPAdes: a new versatile metagenomic assembler. , 2017, Genome research.
[7] G. Berg,et al. The Flavobacterium Genus in the Plant Holobiont: Ecological, Physiological, and Applicative Insights , 2016 .
[8] J. A. Pascual,et al. Microbiota Characterization of Compost Using Omics Approaches Opens New Perspectives for Phytophthora Root Rot Control , 2016, PloS one.
[9] Sampa Das,et al. Insight into the Interaction between Plants and Associated Fluorescent Pseudomonas spp. , 2016 .
[10] Dongwan D. Kang,et al. MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities , 2015, PeerJ.
[11] Connor T. Skennerton,et al. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes , 2015, Genome research.
[12] J. A. Pascual,et al. Identification of predictor parameters to determine agro-industrial compost suppressiveness against Fusarium oxysporum and Phytophthora capsici diseases in muskmelon and pepper seedlings. , 2015, Journal of the science of food and agriculture.
[13] J. A. Pascual,et al. Characterization ofPhytophthora nicotianaeisolates in southeast Spain and their detection and quantification through a real-time TaqMan PCR: Characterization ofPhytophthora nicotianaeisolates in southeast Spain , 2015 .
[14] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[15] B. Simmons,et al. Substrate-Specific Development of Thermophilic Bacterial Consortia by Using Chemically Pretreated Switchgrass , 2014, Applied and Environmental Microbiology.
[16] C. Mehta,et al. Compost: its role, mechanism and impact on reducing soil-borne plant diseases. , 2014, Waste management.
[17] Matthew Fraser,et al. InterProScan 5: genome-scale protein function classification , 2014, Bioinform..
[18] Scott T. Bates,et al. Changes in Bacterial and Fungal Communities across Compost Recipes, Preparation Methods, and Composting Times , 2013, PloS one.
[19] B. Simmons,et al. Community dynamics of cellulose-adapted thermophilic bacterial consortia. , 2013, Environmental microbiology.
[20] Susan Holmes,et al. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.
[21] G. Celano,et al. Agricultural waste-based composts exhibiting suppressivity to diseases caused by the phytopathogenic soil-borne fungi Rhizoctonia solani and Sclerotinia minor , 2013 .
[22] M. Zaccardelli,et al. Novel strains of Bacillus, isolated from compost and compost-amended soils, as biological control agents against soil-borne phytopathogenic fungi , 2012 .
[23] A. Klindworth,et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies , 2012, Nucleic acids research.
[24] M. Sang,et al. The volatile‐producing Flavobacterium johnsoniae strain GSE09 shows biocontrol activity against Phytophthora capsici in pepper , 2012, Journal of applied microbiology.
[25] L. M. Brito,et al. Simple technologies for on-farm composting of cattle slurry solid fraction. , 2012, Waste management.
[26] Y. Hadar. Suppressive compost: when plant pathology met microbial ecology , 2011, Phytoparasitica.
[27] G. Bonanomi,et al. Compost amendments enhance peat suppressiveness to Pythium ultimum, Rhizoctonia solani and Sclerotinia minor , 2011 .
[28] Wenjun Li,et al. Biodiversity, bioactive natural products and biotechnological potential of plant-associated endophytic actinobacteria , 2011, Applied Microbiology and Biotechnology.
[29] J. Delgado,et al. Pyrosequencing Reveals a Highly Diverse and Cultivar-Specific Bacterial Endophyte Community in Potato Roots , 2010, Microbial Ecology.
[30] G. Bonanomi,et al. Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases. , 2010 .
[31] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[32] E. Loffredo,et al. In vitro and in vivo assessment of the potential of compost and its humic acid fraction to protect ornamental plants from soil-borne pathogenic fungi , 2009 .
[33] E. Tsavkelova,et al. Bacteria associated with orchid roots and microbial production of auxin. , 2007, Microbiological research.
[34] A. Termorshuizen,et al. Improving quality of composted biowaste to enhance disease suppressiveness of compost-amended, peat-based potting mixes , 2005 .
[35] A. Manoj Kumar,et al. Pseudomonas fluorescens, a potential bacterial antagonist to control plant diseases , 2005 .
[36] B. Schmid,et al. Soil feedbacks of plant diversity on soil microbial communities and subsequent plant growth , 2005 .
[37] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[38] E. Erhart,et al. Suppression of Pythium ultimum by Biowaste Composts in Relation to Compost Microbial Biomass, Activity and Content of Phenolic Compounds , 1999 .
[39] S. M. Tiquia,et al. Elimination of phytotoxicity during co-composting of spent pig-manure sawdust litter and pig sludge , 1998 .
[40] G. Hardy,et al. Antagonism of fungi and actinomycetes isolated from composted eucalyptus bark to Phytophthora drechsleri in a steamed and non-steamed composted eucalyptus bark-amended container medium , 1995 .
[41] D. G. Allen,et al. Evaluation of Biolog MT plates for aromatic and chloroaromatic substrate utilization tests , 1994 .
[42] J. A. López-González,et al. Dynamics of bacterial microbiota during lignocellulosic waste composting: Studies upon its structure, functionality and biodiversity. , 2015, Bioresource technology.
[43] J. A. Pascual,et al. Characterization of Phytophthora nicotianae isolates in southeast Spain and their detection and quantification through a real-time TaqMan PCR. , 2015, Journal of the science of food and agriculture.
[44] C. Morales‐Rodrìguez,et al. Control of Phytophthora nicotianae with Mefenoxam, Fresh Brassica Tissues, and Brassica Pellets. , 2014, Plant disease.
[45] D. Barman,et al. SEED GERMINATION ENHANCING ACTIVITY OF ENDOPHYTIC STREPTOMYCES ISOLATED FROM INDIGENOUS ETHNO-MEDICINAL PLANT CENTELLA ASIATICA , 2013 .
[46] G. Bonanomi,et al. Suppression of soilborne fungal diseases with organic amendments. , 2007 .
[47] G. Bonanomi,et al. Phytotoxicity dynamics of decaying plant materials. , 2006, The New phytologist.
[48] M. Nashimoto,et al. Microbial communities in the garbage composting with rice hull as an amendment revealed by culture-dependent and -independent approaches. , 2006, Journal of bioscience and bioengineering.
[49] H. Hoitink,et al. Compost-induced systemic acquired resistance in cucumber to Pythium root rot and anthracnose. , 1996 .
[50] D. Sparks,et al. Methods of soil analysis. Part 3 - chemical methods. , 1996 .
[51] T. White. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics , 1990 .