15q26.3 deletions distal to IGF1R cause growth retardation, congenital heart defect and skeletal anomalies: Case report and review of literature

15q26 deletion is a rare genomic disorder characterized by intrauterine and postnatal growth retardation, microcephaly, intellectual disability, and congenital malformations. Here, we report a 4‐month‐old female with intrauterine growth retardation, short stature, pulmonary hypertension, atrial septal defect and congenital bowing of long bones of the legs. Chromosomal microarray analysis showed a de novo deletion of approximately 2.1 Mb at 15q26.3 region that does not include IGF1R. Our analysis of patients documented in the literature and the DECIPHER database with 15q26 deletions distal to IGF1R, including 10 patients with de novo pure deletions, allowed us to define the smallest region of overlap to 686 kb. This region includes ALDH1A3, LRRK1, CHSY1, SELENOS, SNRPA1, and PCSK6. We propose haploinsufficiency of one or more genes, besides IGF1R, within this region may contribute to the clinical findings in patients with 15q26.3 deletion.

[1]  A. Hamosh,et al.  Monochorionic twins with 15q26.3 duplication presenting with selective intrauterine growth restriction and discordant cardiac anomalies: A case report , 2022, Molecular genetics & genomic medicine.

[2]  Aaron F. McDaid,et al.  A Saturated Map of Common Genetic Variants Associated with Human Height from 5.4 Million Individuals of Diverse Ancestries , 2022 .

[3]  M. I. Melaragno,et al.  Partial 5p Gain and 15q Loss in Three Patients from a Family with a t(5;15)(p13.3;q26.3) Translocation , 2020, Cytogenetic and Genome Research.

[4]  Hui-yuan Shao,et al.  Clinical, cytogenetic and molecular analyses of a rare case with ring chromosome 15 and review of the literature. , 2020, Taiwanese journal of obstetrics & gynecology.

[5]  N. de Leeuw,et al.  15q26 deletion in a patient with congenital heart defect, growth restriction and intellectual disability: case report and literature review , 2020, Italian Journal of Pediatrics.

[6]  M. Miryounesi,et al.  A novel homozygous LRRK1 stop gain mutation in a patient suspected with osteosclerotic metaphyseal dysplasia , 2020, Annals of human genetics.

[7]  P. Georgii‐Hemming,et al.  From cytogenetics to cytogenomics: whole-genome sequencing as a first-line test comprehensively captures the diverse spectrum of disease-causing genetic variation underlying intellectual disability , 2019, Genome Medicine.

[8]  S. South,et al.  Technical standards for the interpretation and reporting of constitutional copy number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen) , 2019, Genetics in Medicine.

[9]  H. V. van Duyvenvoorde,et al.  Phenotypic Features and Response to GH Treatment of Patients With a Molecular Defect of the IGF-1 Receptor. , 2019, The Journal of clinical endocrinology and metabolism.

[10]  N. Robin,et al.  Novel de novo pathogenic variant in the NR2F2 gene in a boy with congenital heart defect and dysmorphic features , 2018, American journal of medical genetics. Part A.

[11]  X. Ji,et al.  Chromosomal microarray analysis in developmental delay and intellectual disability with comorbid conditions , 2018, BMC medical genomics.

[12]  M. Leppert,et al.  Germline but not somatic de novo mutations are common in human congenital diaphragmatic hernia. , 2018, Birth defects research.

[13]  B. Melegh,et al.  Small supernumerary marker chromosome 15 and a ring chromosome 15 associated with a 15q26.3 deletion excluding the IGF1R gene , 2018, American journal of medical genetics. Part A.

[14]  F. Sheth,et al.  Molecular characterization and evaluation of complex rearrangements in a case of ring chromosome 15 , 2017, Molecular Cytogenetics.

[15]  G. Pandini,et al.  Chromosome 15 structural abnormalities: effect on IGF1R gene expression and function , 2017, Endocrine connections.

[16]  S. Dateki ACAN mutations as a cause of familial short stature , 2017, Clinical pediatric endocrinology : case reports and clinical investigations : official journal of the Japanese Society for Pediatric Endocrinology.

[17]  I. Barišić,et al.  Chromosomal microarray in clinical diagnosis: a study of 337 patients with congenital anomalies and developmental delays or intellectual disability , 2017, Croatian medical journal.

[18]  G. Mortier,et al.  Identification of biallelic LRRK1 mutations in osteosclerotic metaphyseal dysplasia and evidence for locus heterogeneity , 2016, Journal of Medical Genetics.

[19]  O. Žilina,et al.  Two familial microduplications of 15q26.3 causing overgrowth and variable intellectual disability with normal copy number of IGF1R. , 2016, European journal of medical genetics.

[20]  L. Iughetti,et al.  Familial Short Stature Associated to Terminal Microdeletion of 15q26.3: Variable Phenotype not Involving the IGF1 Receptor Gene , 2015 .

[21]  J. Rosenfeld,et al.  Chromosomal Imbalances in Patients with Congenital Cardiac Defects: A Meta-analysis Reveals Novel Potential Critical Regions Involved in Heart Development. , 2015, Congenital heart disease.

[22]  E. Chouery,et al.  Contribution of copy number variants (CNVs) to congenital, unexplained intellectual and developmental disabilities in Lebanese patients , 2015, Molecular Cytogenetics.

[23]  M. Butler,et al.  Chromosomal microarray analysis of consecutive individuals with autism spectrum disorders or learning disability presenting for genetic services. , 2014, Gene.

[24]  V. Schulz,et al.  Cytogenomic mapping and bioinformatic mining reveal interacting brain expressed genes for intellectual disability , 2014, Molecular Cytogenetics.

[25]  Hongyu Zhao,et al.  Cytogenomic mapping and bioinformatic mining reveal interacting brain expressed genes for intellectual disability , 2014, Molecular Cytogenetics.

[26]  Holger Lerche,et al.  De novo loss-of-function mutations in CHD2 cause a fever-sensitive myoclonic epileptic encephalopathy sharing features with Dravet syndrome. , 2013, American journal of human genetics.

[27]  J. Baron,et al.  Copy number variants in patients with short stature , 2013, European Journal of Human Genetics.

[28]  S. Mohan,et al.  Targeted disruption of leucine‐rich repeat kinase 1 but not leucine‐rich repeat kinase 2 in mice causes severe osteopetrosis , 2013, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research.

[29]  E. van Binsbergen,et al.  Variable behavioural phenotypes of patients with monosomies of 15q26 and a review of 16 cases. , 2013, European journal of medical genetics.

[30]  K. Strauch,et al.  Genome-wide linkage analysis of congenital heart defects using MOD score analysis identifies two novel loci , 2013, BMC Genetics.

[31]  A. Munnich,et al.  ALDH1A3 mutations cause recessive anophthalmia and microphthalmia. , 2013, American journal of human genetics.

[32]  Shihui Yu,et al.  Cardiac Defects Are Infrequent Findings in Individuals With 8p23.1 Genomic Duplications Containing GATA4 , 2011, Circulation. Cardiovascular genetics.

[33]  M. Komada,et al.  Leucine-rich repeat kinase LRRK1 regulates endosomal trafficking of the EGF receptor , 2011, Nature communications.

[34]  R. Hegele,et al.  Temtamy preaxial brachydactyly syndrome is caused by loss-of-function mutations in chondroitin synthase 1, a potential target of BMP signaling. , 2010, American journal of human genetics.

[35]  C. Lese-Martin,et al.  15q overgrowth syndrome: A newly recognized phenotype associated with overgrowth, learning difficulties, characteristic facial appearance, renal anomalies and increased dosage of distal chromosome 15q , 2009, American journal of medical genetics. Part A.

[36]  D. Dunger,et al.  Cell proliferation activities on skin fibroblasts from a short child with absence of one copy of the type 1 insulin-like growth factor receptor (IGF1R) gene and a tall child with three copies of the IGF1R gene. , 2003, The Journal of clinical endocrinology and metabolism.

[37]  D. Constam,et al.  SPC4/PACE4 regulates a TGFbeta signaling network during axis formation. , 2000, Genes & development.