Is reliance on an inaccurate genome sequence sabotaging your experiments?
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[1] Haiming Wang,et al. EuPathDB: the eukaryotic pathogen genomics database resource , 2016, Nucleic Acids Res..
[2] Hideaki Sugawara,et al. The Sequence Read Archive , 2010, Nucleic Acids Res..
[3] Sofia M. C. Robb,et al. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. , 2007, Genome research.
[4] Joseph D. Smith,et al. Antigenic Variation in Plasmodium falciparum: Gene Organization and Regulation of the var Multigene Family , 2007, Eukaryotic Cell.
[5] Bo Wang,et al. Gramene 2018: unifying comparative genomics and pathway resources for plant research , 2017, Nucleic Acids Res..
[6] L. S. Swapna,et al. Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes , 2016, Nature Communications.
[7] Joonhong Park,et al. Characterization of sequence-specific errors in various next-generation sequencing systems. , 2016, Molecular bioSystems.
[8] E. Mardis. Next-generation sequencing platforms. , 2013, Annual review of analytical chemistry.
[9] Jonathan E. Allen,et al. Genome sequence of the human malaria parasite Plasmodium falciparum , 2002, Nature.
[10] Samuel A. Assefa,et al. Culture adaptation of malaria parasites selects for convergent loss-of-function mutants , 2017, Scientific Reports.
[11] Thomas Hackl,et al. proovread: large-scale high-accuracy PacBio correction through iterative short read consensus , 2014, Bioinform..
[12] Gregory A. Buck,et al. The genome of Cryptosporidium hominis , 2004, Nature.
[13] Ping Xu,et al. Complete Genome Sequence of the Apicomplexan, Cryptosporidium parvum , 2004, Science.
[14] F. van Nieuwerburgh,et al. Library construction for next-generation sequencing: overviews and challenges. , 2014, BioTechniques.
[15] James Ostell,et al. The Genome Assembly Archive: A New Public Resource , 2004, PLoS biology.
[16] Eric S. Lander,et al. Hi-C: A Method to Study the Three-dimensional Architecture of Genomes. , 2010, Journal of visualized experiments : JoVE.
[17] Jonathan M. Cairns,et al. CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data , 2015, Genome Biology.
[18] D. Horn. Antigenic variation in African trypanosomes , 2014, Molecular and biochemical parasitology.
[19] Walter Pirovano,et al. SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information , 2014, BMC Bioinformatics.
[20] Sandra Gesing,et al. VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases , 2014, Nucleic Acids Res..
[21] D. Schwartz,et al. Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping. , 1993, Science.
[22] C. Mazzoni,et al. A new hybrid approach for MHC genotyping: high-throughput NGS and long read MinION nanopore sequencing, with application to the non-model vertebrate Alpine chamois (Rupicapra rupicapra) , 2018, Heredity.
[23] Matthew Berriman,et al. Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology , 2010, Bioinform..
[24] Guy Robinson,et al. Generation of whole genome sequences of new Cryptosporidium hominis and Cryptosporidium parvum isolates directly from stool samples , 2015, BMC Genomics.
[25] Rodrigo Lopez,et al. Assembly information services in the European Nucleotide Archive , 2013, Nucleic Acids Res..
[26] B. Haas,et al. The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease , 2005, Science.
[27] J. Leamon,et al. Bias in Whole Genome Amplification: Causes and Considerations. , 2015, Methods in molecular biology.
[28] Kami Kim,et al. Toxoplasma gondii sequesters centromeres to a specific nuclear region throughout the cell cycle , 2011, Proceedings of the National Academy of Sciences.
[29] Shane S. Sturrock,et al. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..
[30] Haiming Wang,et al. GeneDB—an annotation database for pathogens , 2011, Nucleic Acids Res..
[31] Timothy P. L. Smith,et al. Reducing assembly complexity of microbial genomes with single-molecule sequencing , 2013, Genome Biology.
[32] G. Buck,et al. Revisiting the reference genomes of human pathogenic Cryptosporidium species: reannotation of C. parvum Iowa and a new C. hominis reference , 2015, Scientific Reports.
[33] Yazhu Chen,et al. A Brief Review of Computational Gene Prediction Methods , 2004, Genomics, proteomics & bioinformatics.
[34] Kathryn E. McGovern,et al. Comparative 3D genome organization in apicomplexan parasites , 2019, Proceedings of the National Academy of Sciences.
[35] M. Yandell,et al. A beginner's guide to eukaryotic genome annotation , 2012, Nature Reviews Genetics.
[36] S. Magadum,et al. Gene duplication as a major force in evolution , 2013, Journal of Genetics.
[37] Deanna M. Church,et al. Assembly: a resource for assembled genomes at NCBI , 2015, Nucleic Acids Res..