Multi-sample acoustic biosensing microsystem for protein interaction analysis.

The current work describes a novel setup for multi-sample biomolecular analysis. It is based on the assembly of a dual acoustic device chip with a four-channel microfluidic module, forming an array of eight available domains for experiments. Initially, multiple detection was demonstrated via the specific interaction of neutravidin with four different biotinylated proteins, namely protein G, protein A, bovine serum albumin, and immunoglobulin G; results revealed a reproducibility between the microchannel domains better than 90%. Real-time analysis of the binding interactions was used to calculate the affinity and kinetic constants of the four biotinylated molecules binding to surface-immobilized neutravidin; this was the first time that this information was derived using a biosensing device and four biotinylated molecules. Interestingly, all calculated kinetic and affinity constants resemble those typical of antibody-antigen interactions, although the investigated specific binding was of avidin-biotin nature. Finally, under device pre-functionalization conditions, it was possible to probe eight interactions all together, exploiting the full capacity of the microsystem and reducing significantly the analysis time, contrary to the use of the standard acoustic device configuration. The outcome of this full-scale validation opens the way for the integrated acoustic platform to be implemented in even higher throughput detection for future diagnostic/biomedical applications, as well as in fundamental research studies regarding biomolecular interaction investigation and characterization.

[1]  H. Yoon,et al.  Multichannel surface plasmon resonance imaging and analysis of micropatterned self-assembled monolayers and protein affinity interactions. , 2005, Langmuir : the ACS journal of surfaces and colloids.

[2]  E. Gizeli,et al.  Study of the sensitivity of the acoustic waveguide sensor. , 2000, Analytical chemistry.

[3]  F Bender,et al.  Comparative study of IgG binding to proteins G and A: nonequilibrium kinetic and binding constant determination with the acoustic waveguide device. , 2003, Analytical chemistry.

[4]  G. Papadakis,et al.  Acoustic characterization of nanoswitch structures: application to the DNA Holliday Junction. , 2010, Nano letters.

[5]  M. Rapp,et al.  Surface Acoustic Wave (SAW) Biosensor Chip System - a Promising Alternative for Biomedical Applications , 2009 .

[6]  Electra Gizeli,et al.  Comparison of Poly(methylmethacrylate) and Novolak waveguide coatings for an acoustic biosensor , 2001 .

[7]  G. Papadakis,et al.  Shear acoustic wave biosensor for detecting DNA intrinsic viscosity and conformation: a study with QCM-D. , 2008, Biosensors & bioelectronics.

[8]  George Papadakis,et al.  Triple-helix DNA structural studies using a Love wave acoustic biosensor. , 2009, Biosensors & bioelectronics.

[9]  George Papadakis,et al.  Development of a combined surface plasmon resonance/surface acoustic wave device for the characterization of biomolecules , 2009 .

[10]  Feng Yan,et al.  A disposable multianalyte electrochemical immunosensor array for automated simultaneous determination of tumor markers. , 2007, Clinical chemistry.

[11]  Stephen J. Martin,et al.  Dynamics and Response of Polymer-Coated Surface Acoustic Wave Devices: Effect of Viscoelastic Properties and Film Resonance , 1994 .

[12]  J. Reibel,et al.  New miniaturized SAW-sensor array for organic gas detection driven by multiplexed oscillators , 2000 .

[13]  A. Tserepi,et al.  Integration of Microfluidics With a Love Wave Sensor for the Fabrication of a Multisample Analytical Microdevice , 2008, Journal of Microelectromechanical Systems.

[14]  R. Guleria,et al.  Biomarkers in cancer screening, research and detection: present and future: a review , 2006, Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals.

[15]  G. Whitesides,et al.  Fabrication of microfluidic systems in poly(dimethylsiloxane) , 2000, Electrophoresis.

[16]  Jun Kondoh,et al.  Parametric study of SH-SAW device response to various types of surface perturbations , 2009 .

[17]  Eckhard Quandt,et al.  Discrimination of single mutations in cancer-related gene fragments with a surface acoustic wave sensor. , 2006, Analytical chemistry.

[18]  Bastian E. Rapp,et al.  Surface acoustic wave biosensors: a review , 2008, Analytical and bioanalytical chemistry.

[19]  F F Bier,et al.  Real-time observation of affinity reactions using grating couplers: determination of the detection limit and calculation of kinetic rate constants. , 1997, Analytical biochemistry.

[20]  J. Goodrich,et al.  Binding and Kinetics for Molecular Biologists , 2006 .

[21]  S Vajda,et al.  A streptavidin mutant with altered ligand-binding specificity. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Joseph D. Andrade,et al.  Protein adsorption and materials biocompatibility: A tutorial review and suggested hypotheses , 1986 .

[23]  L. Björck,et al.  Streptococcal protein G. Gene structure and protein binding properties. , 1991, The Journal of biological chemistry.

[24]  G. Papadakis,et al.  Characterization of DNA–Hv1 histone interactions; discrimination of DNA size and shape , 2010, FEBS letters.

[25]  W. Reichert,et al.  Influence of biotin lipid surface density and accessibility on avidin binding to the tip of an optical fiber sensor , 1992 .

[26]  C. Morasso,et al.  Avidin Decorated Core–Shell Nanoparticles for Biorecognition Studies by Elastic Light Scattering , 2007, Chembiochem : a European journal of chemical biology.

[27]  Kevin A. Vetelino,et al.  Detection of organic chemicals by SAW sensor array , 1999 .

[28]  R. O'Kennedy,et al.  Cardiac biomarkers and the case for point-of-care testing. , 2009, Clinical biochemistry.

[29]  M. Cereda,et al.  Point-of-care systems for rapid DNA quantification in oncology. , 2008, Tumori.

[30]  Angeliki Tserepi,et al.  SAW device integrated with microfluidics for array-type biosensing , 2009 .

[31]  Kerstin Länge,et al.  Integration of a surface acoustic wave biosensor in a microfluidic polymer chip. , 2006, Biosensors & bioelectronics.

[32]  J. Wayment,et al.  Biotin-avidin binding kinetics measured by single-molecule imaging. , 2009, Analytical chemistry.

[33]  Mwj Menno Prins,et al.  Rapid DNA multi-analyte immunoassay on a magneto-resistance biosensor. , 2009, Biosensors & bioelectronics.

[34]  M. Wilchek,et al.  [6] Nonglycosylated avidin , 1990 .

[35]  S. Quake,et al.  Discovery of a hepatitis C target and its pharmacological inhibitors by microfluidic affinity analysis , 2008, Nature Biotechnology.

[36]  H. Fraenkel-conrat,et al.  The avidin-biotin equilibrium. , 1951, The Journal of biological chemistry.

[37]  N. Green,et al.  AVIDIN. 1. THE USE OF (14-C)BIOTIN FOR KINETIC STUDIES AND FOR ASSAY. , 1963, The Biochemical journal.

[38]  J. Wiltfang,et al.  Microchip electrophoresis profiling of Aβ peptides in the cerebrospinal fluid of patients with Alzheimer's disease. , 2010, Analytical chemistry.

[39]  R. Karlsson,et al.  Kinetic analysis of monoclonal antibody-antigen interactions with a new biosensor based analytical system. , 1991, Journal of immunological methods.

[40]  H. Lang,et al.  Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[41]  C. Duschl,et al.  Surface engineering: optimization of antigen presentation in self-assembled monolayers. , 1996, Biophysical journal.