Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

[1]  Taane G. Clark,et al.  Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data , 2012, PloS one.

[2]  D. Kwiatkowski,et al.  Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes , 2012, BMC Genomics.

[3]  P. Baldacci,et al.  The novel putative transporter NPT1 plays a critical role in early stages of Plasmodium berghei sexual development , 2011, Molecular microbiology.

[4]  Taane G. Clark,et al.  An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome High-Throughput Sequencing , 2011, PloS one.

[5]  P. Deloukas,et al.  Population Genetic Analysis of Plasmodium falciparum Parasites Using a Customized Illumina GoldenGate Genotyping Assay , 2011, PloS one.

[6]  Magnus Manske,et al.  An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations , 2011, Genome Biology.

[7]  C. Buckee,et al.  Multilocus haplotypes reveal variable levels of diversity and population structure of Plasmodium falciparum in Papua New Guinea, a region of intense perennial transmission , 2010, Malaria Journal.

[8]  David L. Smith,et al.  A quantitative analysis of transmission efficiency versus intensity for malaria , 2010, Nature communications.

[9]  H. Stunnenberg,et al.  Three Members of the 6-cys Protein Family of Plasmodium Play a Role in Gamete Fertility , 2010, PLoS pathogens.

[10]  Patrick Durand,et al.  African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum , 2010, Proceedings of the National Academy of Sciences.

[11]  May Ho,et al.  Plasmodium falciparum genome-wide scans for positive selection, recombination hot spots and resistance to antimalarial drugs , 2010, Nature Genetics.

[12]  K. Silamut,et al.  Artemisinin resistance in Plasmodium falciparum malaria. , 2009, The New England journal of medicine.

[13]  Dominic Kwiatkowski,et al.  SNP-o-matic , 2009, Bioinform..

[14]  Z. Ning,et al.  Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of GC-biased genomes , 2009, Nature Methods.

[15]  Eileen Kraemer,et al.  PlasmoDB: a functional genomic database for malaria parasites , 2008, Nucleic Acids Res..

[16]  Philip Montgomery,et al.  Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence , 2008, Genome Biology.

[17]  Nancy F. Hansen,et al.  Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.

[18]  Deepak Gaur,et al.  Erythrocyte binding protein PfRH5 polymorphisms determine species-specific pathways of Plasmodium falciparum invasion. , 2008, Cell host & microbe.

[19]  M. Feldman,et al.  Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation , 2008 .

[20]  D. Conway,et al.  Evidence of non-neutral polymorphism in Plasmodium falciparum gamete surface protein genes Pfs47 and Pfs48/45. , 2007, Molecular and biochemical parasitology.

[21]  Kyle T. Siebenthall,et al.  Genome variation and evolution of the malaria parasite Plasmodium falciparum , 2007, Nature Genetics.

[22]  Pardis C Sabeti,et al.  A genome-wide map of diversity in Plasmodium falciparum , 2007, Nature Genetics.

[23]  G. McVean,et al.  Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome , 2007, Nature Genetics.

[24]  W. G. Hill,et al.  Linkage disequilibrium in finite populations , 1968, Theoretical and Applied Genetics.

[25]  Kiaran Kirk,et al.  The 'permeome' of the malaria parasite: an overview of the membrane transport proteins of Plasmodium falciparum , 2005, Genome Biology.

[26]  M. Coosemans,et al.  Malaria transmission and major malaria vectors in different geographical areas of Southeast Asia , 2004, Tropical medicine & international health : TM & IH.

[27]  Peter Beerli,et al.  Early Origin and Recent Expansion of Plasmodium falciparum , 2003, Science.

[28]  Jonathan E. Allen,et al.  Genome sequence of the human malaria parasite Plasmodium falciparum , 2002, Nature.

[29]  John C. Wootton,et al.  Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum , 2002, Nature.

[30]  P. Roepe,et al.  Evolution of a unique Plasmodium falciparum chloroquine-resistance phenotype in association with pfcrt polymorphism in Papua New Guinea and South America , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[31]  J. T. Williams,et al.  Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. , 2000, Molecular biology and evolution.

[32]  J C Wootton,et al.  A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. , 1999, Science.

[33]  R. Price,et al.  Genetic analysis of Plasmodium falciparum infections on the north-western border of Thailand. , 1999, Transactions of the Royal Society of Tropical Medicine and Hygiene.

[34]  B G Williams,et al.  Multigenic drug resistance among inbred malaria parasites , 1997, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[35]  R. Paru,et al.  Mating patterns in malaria parasite populations of Papua New Guinea. , 1995, Science.

[36]  L. Ranford-Cartwright,et al.  Estimation of inbreeding coefficients from genotypic data on multiple alleles, and application to estimation of clonality in malaria parasites. , 1995, Genetical research.

[37]  Thomas E. Wellems,et al.  Chloroquine resistance not linked to mdr-like genes in a Plasmodium falciparum cross , 1990, Nature.

[38]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[39]  T. Burkot,et al.  Genetic analysis of the human malaria parasite Plasmodium falciparum. , 1987, Science.

[40]  D. Hartl,et al.  Principles of population genetics , 1981 .

[41]  J. Gower.  Some distance properties of latent root and vector methods used in multivariate analysis , 1966 .

[42]  R. Lewontin.  The Interaction of Selection and Linkage. I. General Considerations; Heterotic Models. , 1964, Genetics.