Contingency and Statistical Laws in Replicate Microbial Closed Ecosystems

[1]  L. R. Taylor,et al.  Aggregation, Variance and the Mean , 1961, Nature.

[2]  F. Taub,et al.  A CHLORELLA‐DAPHNIA FOOD‐CHAIN STUDY: THE DESIGN OF A COMPATIBLE CHEMICALLY DEFINED CULTURE MEDIUM 1, 2 , 1964 .

[3]  Luigi M. Ricciardi On the transformation of diffusion processes into the Wiener process , 1976 .

[4]  R. May,et al.  Stability and Complexity in Model Ecosystems , 1976, IEEE Transactions on Systems, Man, and Cybernetics.

[5]  D. Sprugel,et al.  Correcting for Bias in Log‐Transformed Allometric Equations , 1983 .

[6]  B. Efron,et al.  A Leisurely Look at the Bootstrap, the Jackknife, and , 1983 .

[7]  N. Herrndorf A Functional Central Limit Theorem for Weakly Dependent Sequences of Random Variables , 1984 .

[8]  P. Phillips,et al.  Multiple Time Series Regression with Integrated Processes , 1986 .

[9]  P. Phillips Time series regression with a unit root , 1987 .

[10]  J. Stock,et al.  Testing for Common Trends , 1988 .

[11]  Carlson,et al.  Mechanical model of an earthquake fault. , 1989, Physical review. A, General physics.

[12]  J. Hailman Wonderful Life: The Burgess Shale and the Nature of History, Stephen Jay Gould. W. W. Norton, New York (1989), 347, Price $19.95 (U.S.A.), $27.95 (Canada) , 1991 .

[13]  AC Tose Cell , 1993, Cell.

[14]  The metabolic diversity, biological activity, and stability of the steady state condition in closed ecosystems , 1993 .

[15]  James D. Hamilton Time Series Analysis , 1994 .

[16]  P. Bak,et al.  Complexity, contingency, and criticality. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[17]  Z. Kawabata,et al.  Synthesis of a Species-Defined Microcosm with Protozoa , 1995 .

[18]  Anthony R. Ives,et al.  Measuring Resilience in Stochastic Systems , 1995 .

[19]  H. Bujard,et al.  Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. , 1997, Nucleic acids research.

[20]  H. Kantz,et al.  Nonlinear time series analysis , 1997 .

[21]  D. Percival,et al.  Evaluating scaled windowed variance methods for estimating the Hurst coefficient of time series. , 1997, Physica A.

[22]  J. Bouchaud,et al.  Noise Dressing of Financial Correlation Matrices , 1998, cond-mat/9810255.

[23]  Rosario N. Mantegna,et al.  Book Review: An Introduction to Econophysics, Correlations, and Complexity in Finance, N. Rosario, H. Mantegna, and H. E. Stanley, Cambridge University Press, Cambridge, 2000. , 2000 .

[24]  Mark A. Schembri,et al.  Antigen 43 and Type 1 Fimbriae Determine Colony Morphology of Escherichia coli K-12 , 2000, Journal of bacteriology.

[25]  M. Begon,et al.  Invasion sequence affects predator–prey dynamics in a multi-species interaction , 2000, Nature.

[26]  J. Sethna,et al.  Crackling noise , 2001, Nature.

[27]  J. Berman,et al.  Cassettes for PCR‐mediated construction of green, yellow, and cyan fluorescent protein fusions in Candida albicans , 2001, Yeast.

[28]  J. Sethna,et al.  Crackling noise : Complex systems , 2001 .

[29]  B. Wanner,et al.  Conditional-Replication, Integration, Excision, and Retrieval Plasmid-Host Systems for Gene Structure-Function Studies of Bacteria , 2001, Journal of bacteriology.

[30]  H Eugene Stanley,et al.  Scaling in the growth of geographically subdivided populations: invariant patterns from a continent-wide biological survey. , 2001, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[31]  J. Gitelson Man-Made Closed Ecological Systems , 2002 .

[32]  A. Buckling,et al.  The role of parasites in sympatric and allopatric host diversification , 2002, Nature.

[33]  Philip H. Warren,et al.  MAPPING THE ASSEMBLY OF PROTIST COMMUNITIES IN MICROCOSMS , 2003 .

[34]  S. Ellner,et al.  Rapid evolution drives ecological dynamics in a predator–prey system , 2003, Nature.

[35]  S. Carpenter,et al.  ESTIMATING COMMUNITY STABILITY AND ECOLOGICAL INTERACTIONS FROM TIME‐SERIES DATA , 2003 .

[36]  F. Del Bene,et al.  Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy , 2004, Science.

[37]  Z. Kawabata,et al.  Direct and indirect interactions for coexistence in a species-defined microcosm , 2000, Hydrobiologia.

[38]  R. Tsien,et al.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein , 2004, Nature Biotechnology.

[39]  Yifan Liu,et al.  Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[40]  Horst Malchow,et al.  Experimental demonstration of chaos in a microbial food web , 2005, Nature.

[41]  A. D. Roos,et al.  Direct experimental evidence for alternative stable states: a review , 2005 .

[42]  Broad distribution of stick-slip events in Slowly Sheared Granular Media: Table-top production of a Gutenberg-Richter-like distribution , 2006, 0706.3136.

[43]  H. Mori,et al.  Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.

[44]  R D Stevens,et al.  Compensatory dynamics are rare in natural ecological communities , 2007, Proceedings of the National Academy of Sciences.

[45]  Hiro-Sato Niwa,et al.  Random-walk dynamics of exploited fish populations , 2007 .

[46]  P. Morin,et al.  Community convergence in a simple microbial food web , 2009, Ecological Research.

[47]  S. Havlin,et al.  Comparison of detrending methods for fluctuation analysis , 2008, 0804.4081.

[48]  J. Kertész,et al.  Fluctuation scaling in complex systems: Taylor's law and beyond , 2007, 0708.2053.

[49]  R. Lenski,et al.  Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli , 2008 .

[50]  Brett A. Melbourne,et al.  Highly Variable Spread Rates in Replicated Biological Invasions: Fundamental Limits to Predictability , 2009, Science.

[51]  D. Hekstra Population Dynamics In A Model Closed Ecosystem , 2009 .

[52]  Hideaki Matsuoka,et al.  Auto-/heterotrophic endosymbiosis evolves in a mature stage of ecosystem development in a microcosm composed of an alga, a bacterium and a ciliate , 2009, Biosyst..

[53]  R. Ricklefs,et al.  Adaptation and diversification on islands , 2009, Nature.

[54]  S. Morris Evolution: like any other science it is predictable. , 2010, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[55]  Stanislas Leibler,et al.  Microbial population dynamics by digital in-line holographic microscopy. , 2010, The Review of scientific instruments.

[56]  Lin Jiang,et al.  Alternative community compositional and dynamical states: the dual consequences of assembly history. , 2011, The Journal of animal ecology.

[57]  M. Hochberg,et al.  Taylor's Law holds in experimental bacterial populations but competition does not influence the slope , 2012, Biology Letters.