Analysis of the effect of microgravity on protein crystal quality: the case of a myoglobin triple mutant.

Crystals of the Met derivative of the sperm whale myoglobin triple mutant Mb-YQR [L(B10)Y, H(E7)Q and T(E10)R] were grown under microgravity conditions and on earth by vapour diffusion. A comparison of crystal quality after complete data collection and processing shows how microgravity-grown crystals diffract to better resolution and lead to considerably improved statistics for X-ray diffraction data compared with crystals grown on earth under the same conditions. The same set of experiments was reproduced on two different Spacelab missions (ISS 6A and ISS 8A) in 2001 and 2002. The structure of this mutant myoglobin, refined using data collected at ELETTRA (Trieste, Italy) from both kinds of crystals, shows that X-ray diffraction from microgravity-grown crystals leads to better defined electron-density maps as well as improved geometrical quality of the refined model. Improvement of the stereochemical parameters of a protein structure is fundamental to quantitative analysis of its function and dynamics and hence to thorough understanding of the molecular mechanisms of action.

[1]  R. G. Hart,et al.  Structure of Myoglobin: A Three-Dimensional Fourier Synthesis at 2 Å. Resolution , 1960, Nature.

[2]  S. French,et al.  On the treatment of negative intensity observations , 1978 .

[3]  M. Perutz,et al.  Regulation of oxygen affinity of hemoglobin: influence of structure of the globin on the heme iron. , 1979, Annual review of biochemistry.

[4]  A Merli,et al.  Reactivity of ferric Aplysia and sperm whale myoglobins towards imidazole. X-ray and binding study. , 1982, Journal of molecular biology.

[5]  I. Kuntz,et al.  Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A. , 1984, Biochemistry.

[6]  Randy J. Read,et al.  A phased translation function , 1988 .

[7]  A. Brunger Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. , 1992 .

[8]  D S Moss,et al.  Main-chain bond lengths and bond angles in protein structures. , 1993, Journal of molecular biology.

[9]  Andrea Brancaccio,et al.  Engineering Ascaris hemoglobin oxygen affinity in sperm whale myoglobin: role of tyrosine B10 , 1994, FEBS letters.

[10]  M. Chance,et al.  Global mapping of structural solutions provided by the extended X-ray absorption fine structure ab initio code FEFF 6.01: structure of the cryogenic photoproduct of the myoglobin-carbon monoxide complex. , 1996, Biochemistry.

[11]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[12]  M. Brunori,et al.  Structural dynamics of ligand diffusion in the protein matrix: A study on a new myoglobin mutant Y(B10) Q(E7) R(E10). , 1999, Biophysical journal.

[13]  P. Vekilov Protein crystal growth--microgravity aspects. , 1999, Advances in space research : the official journal of the Committee on Space Research.

[14]  The Role of Cavities in Protein Dynamics: Crystal Structure of a Novel Photolytic Intermediate of Myoglobin , 2000 .

[15]  I. Schlichting,et al.  Trapping intermediates in the crystal: ligand binding to myoglobin. , 2000, Current opinion in structural biology.

[16]  D Bourgeois,et al.  Protein conformational relaxation and ligand migration in myoglobin: a nanosecond to millisecond molecular movie from time-resolved Laue X-ray diffraction. , 2001, Biochemistry.

[17]  Q. Gibson,et al.  Mapping the Pathways for O2 Entry Into and Exit from Myoglobin* , 2001, The Journal of Biological Chemistry.

[18]  A. Miele,et al.  Controlling Ligand Binding in Myoglobin by Mutagenesis* , 2002, The Journal of Biological Chemistry.

[19]  A. Miele,et al.  Structural Dynamics of Myoglobin , 2002, The Journal of Biological Chemistry.

[20]  R. Berisio,et al.  Crystal structure of the collagen triple helix model [(Pro‐Pro‐Gly)10]3 , 2002, Protein science : a publication of the Protein Society.