Extending long-range phasing and haplotype library imputation algorithms to very large and heterogeneous datasets
暂无分享,去创建一个
Gregor Gorjanc | John M. Hickey | Daniel Money | David Wilson | Janez Jenko | A. Whalen | J. Hickey | Daniel Money | G. Gorjanc | J. Jenko | David L. Wilson | Steve Thorn | Daniel Money | J. M. Hickey
[1] Gregor Gorjanc,et al. Assessment of the performance of different hidden Markov models for imputation in animal breeding , 2017, bioRxiv.
[2] Bruce Tier,et al. A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes , 2011, Genetics Selection Evolution.
[3] Gregor Gorjanc,et al. AlphaSim: Software for Breeding Program Simulation , 2016, The plant genome.
[4] P M VanRaden,et al. Genomic imputation and evaluation using high-density Holstein genotypes. , 2013, Journal of dairy science.
[5] P. Visscher,et al. 10 Years of GWAS Discovery: Biology, Function, and Translation. , 2017, American journal of human genetics.
[6] Pall I. Olason,et al. Detection of sharing by descent, long-range phasing and haplotype imputation , 2008, Nature Genetics.
[7] B. Browning,et al. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. , 2007, American journal of human genetics.
[8] P. Donnelly,et al. Genome-wide genetic data on ~500,000 UK Biobank participants , 2017, bioRxiv.
[9] P. Visscher. Human Complex Trait Genetics in the 21st Century , 2016, Genetics.
[10] V. Bansal,et al. The importance of phase information for human genomics , 2011, Nature Reviews Genetics.
[11] R. Houston,et al. Potential of genotyping-by-sequencing for genomic selection in livestock populations , 2015, Genetics Selection Evolution.
[12] Michael E. Goddard,et al. Genomic selection: A paradigm shift in animal breeding , 2016 .
[13] Gary K. Chen,et al. Fast and flexible simulation of DNA sequence data. , 2008, Genome research.
[14] L. Wain,et al. Haplotype estimation for biobank scale datasets , 2016, Nature Genetics.
[15] C. Lawley,et al. SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species , 2015, BMC Genomics.
[16] J. Kearney,et al. SNP Data Quality Control in a National Beef and Dairy Cattle System and Highly Accurate SNP Based Parentage Verification and Identification , 2017, bioRxiv.
[17] P. Visscher,et al. Five years of GWAS discovery. , 2012, American journal of human genetics.
[18] B. Browning,et al. Haplotype phasing: existing methods and new developments , 2011, Nature Reviews Genetics.
[19] Paul Scheet,et al. A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. , 2006, American journal of human genetics.
[20] P. Elliott,et al. UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age , 2015, PLoS medicine.
[21] A. Whalen,et al. Identification of causal variants using one million individuals with whole–genome sequence information , 2018 .
[22] Tad S Sonstegard,et al. Genomic Selection in Dairy Cattle: The USDA Experience. , 2017, Annual review of animal biosciences.