Engineering nucleic acid structures for programmable molecular circuitry and intracellular biocomputation.
暂无分享,去创建一个
Hao Yan | C. Fan | Jiang Li | Alexander A. Green | A. Green
[1] Lei S. Qi. Faculty of 1000 evaluation for Biology and applications of CRISPR systems: harnessing nature's toolbox for genome engineering. , 2017 .
[2] Hendrik Dietz,et al. Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes , 2017, Science.
[3] C. Fan,et al. DNA Nanostructure-Based Engineering of the Biosensing Interface for Biomolecular Detection , 2017 .
[4] Jing Zhu,et al. A DNA dual lock-and-key strategy for cell-subtype-specific siRNA delivery , 2016, Nature Communications.
[5] T. Fujii,et al. High-resolution mapping of bifurcations in nonlinear biochemical circuits. , 2016, Nature chemistry.
[6] Hieu Bui,et al. Analog Computation by DNA Strand Displacement Circuits. , 2016, ACS synthetic biology.
[7] Clemens Mayer,et al. An Epigenetics‐Inspired DNA‐Based Data Storage System , 2016, Angewandte Chemie.
[8] Peng Yin,et al. Genetic encoding of DNA nanostructures and their self-assembly in living bacteria , 2016, Nature Communications.
[9] Christopher A. Voigt,et al. Genetic circuit design automation , 2016, Science.
[10] Bruce A. Shapiro,et al. Multistrand Structure Prediction of Nucleic Acid Assemblies and Design of RNA Switches. , 2016, Nano letters.
[11] Warren C. W. Chan,et al. DNA-controlled dynamic colloidal nanoparticle systems for mediating cellular interaction , 2016, Science.
[12] Hao Yan,et al. Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion , 2016, Nature Communications.
[13] Shuo Diao,et al. A small-molecule dye for NIR-II imaging. , 2016, Nature materials.
[14] Jennifer A. Doudna,et al. Biology and Applications of CRISPR Systems: Harnessing Nature’s Toolbox for Genome Engineering , 2016, Cell.
[15] H. Sleiman,et al. Transfer of molecular recognition information from DNA nanostructures to gold nanoparticles , 2016, Nature Chemistry.
[16] Leonid A. Mirny,et al. Super-resolution imaging reveals distinct chromatin folding for different epigenetic states , 2015, Nature.
[17] Georg Seelig,et al. Computing in mammalian cells with nucleic acid strand exchange , 2015, Nature nanotechnology.
[18] William M. Shih,et al. Scalable amplification of strand subsets from chip-synthesized oligonucleotide libraries , 2015, Nature Communications.
[19] Itamar Willner,et al. Stimuli-responsive DNA-functionalized nano-/microcontainers for switchable and controlled release. , 2015, Angewandte Chemie.
[20] Chao Wang,et al. Self-assembled DNA nanoclews for the efficient delivery of CRISPR-Cas9 for genome editing. , 2015, Angewandte Chemie.
[21] Hao Yan,et al. Complex wireframe DNA origami nanostructures with multi-arm junction vertices. , 2015, Nature nanotechnology.
[22] Pekka Orponen,et al. DNA rendering of polyhedral meshes at the nanoscale , 2015, Nature.
[23] Tim Liedl,et al. One-Step Formation of "Chain-Armor"-Stabilized DNA Nanostructures. , 2015, Angewandte Chemie.
[24] C. Niemeyer,et al. Designed Intercalators for Modification of DNA Origami Surface Properties. , 2015, Chemistry.
[25] S. Murata,et al. Self-replication of DNA rings. , 2015, Nature nanotechnology.
[26] E. Winfree,et al. Increasing Redundancy Exponentially Reduces Error Rates during Algorithmic Self-Assembly. , 2015, ACS nano.
[27] Ethan Bier,et al. The mutagenic chain reaction: A method for converting heterozygous to homozygous mutations , 2015, Science.
[28] H. Dietz,et al. Dynamic DNA devices and assemblies formed by shape-complementary, non–base pairing 3D components , 2015, Science.
[29] James Chappell,et al. Creating small transcription activating RNAs. , 2015, Nature chemical biology.
[30] N. Seeman,et al. Programmable materials and the nature of the DNA bond , 2015, Science.
[31] Chunhai Fan,et al. Growth and origami folding of DNA on nanoparticles for high-efficiency molecular transport in cellular imaging and drug delivery. , 2015, Angewandte Chemie.
[32] I. Willner,et al. Switchable catalytic DNA catenanes. , 2015, Nano letters.
[33] Dick Yan Tam,et al. Multifunctional DNA nanomaterials for biomedical applications , 2015 .
[34] Cameron Myhrvold,et al. Using synthetic RNAs as scaffolds and regulators , 2015, Nature Structural &Molecular Biology.
[35] Robert Batey,et al. Faculty Opinions recommendation of Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution. , 2014 .
[36] Z. Cai,et al. Synthesizing AND gate genetic circuits based on CRISPR-Cas9 for identification of bladder cancer cells , 2014, Nature Communications.
[37] James J. Collins,et al. Paper-Based Synthetic Gene Networks , 2014, Cell.
[38] J. Collins,et al. Toehold Switches: De-Novo-Designed Regulators of Gene Expression , 2014, Cell.
[39] T. Lu,et al. Genomically encoded analog memory with precise in vivo DNA writing in living cell populations , 2014, Science.
[40] Grigory S. Filonov,et al. Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution , 2014, Journal of the American Chemical Society.
[41] Zhen Gu,et al. Cocoon-Like Self-Degradable DNA Nanoclew for Anticancer Drug Delivery , 2014, Journal of the American Chemical Society.
[42] Julián Valero,et al. Logic gating by macrocycle displacement using a double-stranded DNA [3]rotaxane shuttle. , 2014, Angewandte Chemie.
[43] Michael Famulok,et al. Interlocked DNA nanostructures controlled by a reversible logic circuit , 2014, Nature Communications.
[44] William M. Shih,et al. Addressing the Instability of DNA Nanostructures in Tissue Culture , 2014, ACS nano.
[45] Cody W. Geary,et al. A single-stranded architecture for cotranscriptional folding of RNA nanostructures , 2014, Science.
[46] Jiye Shi,et al. Single-particle tracking and modulation of cell entry pathways of a tetrahedral DNA nanostructure in live cells. , 2014, Angewandte Chemie.
[47] Hao Yan,et al. Multi-enzyme complexes on DNA scaffolds capable of substrate channelling with an artificial swinging arm. , 2014, Nature nanotechnology.
[48] Weihong Tan,et al. DNA nanoflowers for multiplexed cellular imaging and traceable targeted drug delivery. , 2014, Angewandte Chemie.
[49] Luc Jaeger,et al. RNA self-assembly and RNA nanotechnology. , 2014, Accounts of chemical research.
[50] Wen Jiang,et al. Construction of RNA nanocages by re-engineering the packaging RNA of Phi29 bacteriophage , 2014, Nature Communications.
[51] R. Weiss,et al. CRISPR transcriptional repression devices and layered circuits in mammalian cells , 2014, Nature Methods.
[52] G. Church,et al. Large-scale de novo DNA synthesis: technologies and applications , 2014, Nature Methods.
[53] Martin J. Aryee,et al. Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing , 2014, Nature Biotechnology.
[54] William M. Shih,et al. Virus-Inspired Membrane Encapsulation of DNA Nanostructures To Achieve In Vivo Stability , 2014, ACS nano.
[55] Miu Shan Chan,et al. Nanoneedle-assisted delivery of site-selective peptide-functionalized DNA nanocages for targeting mitochondria and nuclei. , 2014, Small.
[56] Christopher A. Voigt,et al. Realizing the potential of synthetic biology , 2014, Nature Reviews Molecular Cell Biology.
[57] Almogit Abu-Horowitz,et al. Universal computing by DNA origami robots in a living animal , 2014, Nature nanotechnology.
[58] Lei Wang,et al. Generation of Gene-Modified Cynomolgus Monkey via Cas9/RNA-Mediated Gene Targeting in One-Cell Embryos , 2014, Cell.
[59] Jiye Shi,et al. Hybridization chain reaction amplification of microRNA detection with a tetrahedral DNA nanostructure-based electrochemical biosensor. , 2014, Analytical chemistry.
[60] Johannes B. Woehrstein,et al. Multiplexed 3D Cellular Super-Resolution Imaging with DNA-PAINT and Exchange-PAINT , 2014, Nature Methods.
[61] Luke A. Gilbert,et al. Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System , 2013, Cell.
[62] Weihong Tan,et al. Noncanonical self-assembly of multifunctional DNA nanoflowers for biomedical applications. , 2013, Journal of the American Chemical Society.
[63] Jiye Shi,et al. Smart Drug Delivery Nanocarriers with Self‐Assembled DNA Nanostructures , 2013, Advanced materials.
[64] Cameron Myhrvold,et al. Isothermal self-assembly of complex DNA structures under diverse and biocompatible conditions. , 2013, Nano letters.
[65] Luke A. Gilbert,et al. CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes , 2013, Cell.
[66] Anusuya Banerjee,et al. Controlled release of encapsulated cargo from a DNA icosahedron using a chemical trigger. , 2013, Angewandte Chemie.
[67] Byeong-Su Kim,et al. Sentinel lymph node imaging by a fluorescently labeled DNA tetrahedron. , 2013, Biomaterials.
[68] C. Barbas,et al. ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. , 2013, Trends in biotechnology.
[69] Julius B. Lucks,et al. A modular strategy for engineering orthogonal chimeric RNA transcription regulators , 2013, Nucleic acids research.
[70] Yamuna Krishnan,et al. Two DNA nanomachines map pH changes along intersecting endocytic pathways inside the same cell. , 2013, Nature nanotechnology.
[71] Rahul Sarpeshkar,et al. Synthetic analog computation in living cells , 2013, Nature.
[72] Drew Endy,et al. Amplifying Genetic Logic Gates , 2013, Science.
[73] Timothy K Lu,et al. Synthetic circuits integrating logic and memory in living cells , 2013, Nature Biotechnology.
[74] Luke A. Gilbert,et al. Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression , 2013, Cell.
[75] A. Turberfield,et al. Non-covalent single transcription factor encapsulation inside a DNA cage. , 2013, Angewandte Chemie.
[76] James E. DiCarlo,et al. RNA-Guided Human Genome Engineering via Cas9 , 2013, Science.
[77] Le Cong,et al. Multiplex Genome Engineering Using CRISPR/Cas Systems , 2013, Science.
[78] Jennifer Doudna,et al. RNA-programmed genome editing in human cells , 2013, eLife.
[79] Ewan Birney,et al. Towards practical, high-capacity, low-maintenance information storage in synthesized DNA , 2013, Nature.
[80] Jie Chao,et al. Single-step rapid assembly of DNA origami nanostructures for addressable nanoscale bioreactors. , 2013, Journal of the American Chemical Society.
[81] K. Polizzi. What is synthetic biology? , 2013, Methods in molecular biology.
[82] Luvena L. Ong,et al. Three-Dimensional Structures Self-Assembled from DNA Bricks , 2012, Science.
[83] Peng Yin,et al. Submicrometre geometrically encoded fluorescent barcodes self-assembled from DNA. , 2012, Nature chemistry.
[84] G. Church,et al. Next-Generation Digital Information Storage in DNA , 2012, Science.
[85] Chunhai Fan,et al. Reconfigurable three-dimensional DNA nanostructures for the construction of intracellular logic sensors. , 2012, Angewandte Chemie.
[86] J. Doudna,et al. A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity , 2012, Science.
[87] Hao Yan,et al. A DNA nanostructure platform for directed assembly of synthetic vaccines. , 2012, Nano letters.
[88] Hao Yan,et al. DNA origami as a carrier for circumvention of drug resistance. , 2012, Journal of the American Chemical Society.
[89] Markus Wieland,et al. Programmable single-cell mammalian biocomputers , 2012, Nature.
[90] Y. Benenson. Biomolecular computing systems: principles, progress and potential , 2012, Nature Reviews Genetics.
[91] Daniel G. Anderson,et al. Molecularly Self-Assembled Nucleic Acid Nanoparticles for Targeted In Vivo siRNA Delivery , 2012, Nature nanotechnology.
[92] Adam P Arkin,et al. Supplementary information for Rationally designed families of orthogonal RNA regulators of translation , 2012 .
[93] Hans A. Heus,et al. Fast production of homogeneous recombinant RNA—towards large-scale production of RNA , 2012, Nucleic acids research.
[94] James J. Collins,et al. Genetic switchboard for synthetic biology applications , 2012, Proceedings of the National Academy of Sciences.
[95] K. Deisseroth,et al. Optogenetic investigation of neural circuits underlying brain disease in animal models , 2012, Nature Reviews Neuroscience.
[96] Hao Yan,et al. Interenzyme substrate diffusion for an enzyme cascade organized on spatially addressable DNA nanostructures. , 2012, Journal of the American Chemical Society.
[97] Wenjiao Song,et al. Fluorescence Imaging of Cellular Metabolites with RNA , 2012, Science.
[98] Y. Mori,et al. Zinc-finger proteins for site-specific protein positioning on DNA-origami structures. , 2012, Angewandte Chemie.
[99] Shawn M. Douglas,et al. A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads , 2012, Science.
[100] Hanadi F Sleiman,et al. Rolling circle amplification-templated DNA nanotubes show increased stability and cell penetration ability. , 2012, Journal of the American Chemical Society.
[101] Eric H Davidson,et al. Synthetic in vivo validation of gene network circuitry , 2012, Proceedings of the National Academy of Sciences.
[102] Chad A Mirkin,et al. Spherical nucleic acids. , 2012, Journal of the American Chemical Society.
[103] Jonathan Bath,et al. Reversible logic circuits made of DNA. , 2011, Journal of the American Chemical Society.
[104] H. Pei,et al. Self-assembled multivalent DNA nanostructures for noninvasive intracellular delivery of immunostimulatory CpG oligonucleotides. , 2011, ACS nano.
[105] Hao Yan,et al. DNA directed self-assembly of anisotropic plasmonic nanostructures. , 2011, Journal of the American Chemical Society.
[106] Andrew Phillips,et al. Localized Hybridization Circuits , 2011, DNA.
[107] Michael Famulok,et al. Aptamers for allosteric regulation. , 2011, Nature chemical biology.
[108] S. Jaffrey,et al. RNA Mimics of Green Fluorescent Protein , 2011, Science.
[109] Faisal A. Aldaye,et al. Organization of Intracellular Reactions with Rationally Designed RNA Assemblies , 2011, Science.
[110] Jehoshua Bruck,et al. Neural network computation with DNA strand displacement cascades , 2011, Nature.
[111] Hao Yan,et al. Organizing DNA origami tiles into larger structures using preformed scaffold frames. , 2011, Nano letters.
[112] Matthew J. A. Wood,et al. DNA cage delivery to mammalian cells. , 2011, ACS nano.
[113] Sandhya P Koushika,et al. A synthetic icosahedral DNA-based host-cargo complex for functional in vivo imaging. , 2011, Nature communications.
[114] Lulu Qian,et al. Supporting Online Material Materials and Methods Figs. S1 to S6 Tables S1 to S4 References and Notes Scaling up Digital Circuit Computation with Dna Strand Displacement Cascades , 2022 .
[115] Adam P Arkin,et al. Versatile RNA-sensing transcriptional regulators for engineering genetic networks , 2011, Proceedings of the National Academy of Sciences.
[116] Hao Yan,et al. DNA Origami with Complex Curvatures in Three-Dimensional Space , 2011, Science.
[117] D. Meldrum,et al. Stability of DNA origami nanoarrays in cell lysate. , 2011, Nano letters.
[118] G. Seelig,et al. Dynamic DNA nanotechnology using strand-displacement reactions. , 2011, Nature chemistry.
[119] Hari K. K. Subramanian,et al. The label-free unambiguous detection and symbolic display of single nucleotide polymorphisms on DNA origami. , 2011, Nano letters.
[120] Christopher A. Voigt,et al. Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’ , 2011, Nature.
[121] E. Winfree,et al. A simple DNA gate motif for synthesizing large-scale circuits , 2009, Journal of The Royal Society Interface.
[122] F. Simmel,et al. Single-molecule kinetics and super-resolution microscopy by fluorescence imaging of transient binding on DNA origami. , 2010, Nano letters.
[123] Le A. Trinh,et al. Programmable in situ amplification for multiplexed imaging of mRNA expression , 2010, Nature Biotechnology.
[124] Chunhai Fan,et al. A DNA-Origami chip platform for label-free SNP genotyping using toehold-mediated strand displacement. , 2010, Small.
[125] R. Levine,et al. DNA computing circuits using libraries of DNAzyme subunits. , 2010, Nature nanotechnology.
[126] Martin Fussenegger,et al. Self-sufficient control of urate homeostasis in mice by a synthetic circuit , 2010, Nature Biotechnology.
[127] Emily M. LeProust,et al. Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process , 2010, Nucleic acids research.
[128] Xingguo Liang,et al. A light-driven DNA nanomachine for the efficient photoswitching of RNA digestion. , 2010, Angewandte Chemie.
[129] Erik Winfree,et al. DNA as a universal substrate for chemical kinetics , 2009, Proceedings of the National Academy of Sciences.
[130] Erik Winfree,et al. Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates. , 2010, Nature nanotechnology.
[131] Y. Kikuchi,et al. Extracellular Production of an RNA Aptamer by Ribonuclease-Free Marine Bacteria Harboring Engineered Plasmids: a Proposal for Industrial RNA Drug Production , 2009, Applied and Environmental Microbiology.
[132] Jung-Won Keum,et al. Enhanced resistance of DNA nanostructures to enzymatic digestion. , 2009, Chemical communications.
[133] D. Y. Zhang,et al. Control of DNA strand displacement kinetics using toehold exchange. , 2009, Journal of the American Chemical Society.
[134] Pamela E. Constantinou,et al. From Molecular to Macroscopic via the Rational Design of a Self-Assembled 3D DNA Crystal , 2009, Nature.
[135] J. Kjems,et al. Self-assembly of a nanoscale DNA box with a controllable lid , 2009, Nature.
[136] Shawn M. Douglas,et al. Self-assembly of DNA into nanoscale three-dimensional shapes , 2009, Nature.
[137] Yamuna Krishnan,et al. A DNA nanomachine that maps spatial and temporal pH changes inside living cells. , 2009, Nature nanotechnology.
[138] P. Tran,et al. Opportunities for nanotechnology-enabled bioactive bone implants , 2009 .
[139] Itamar Willner,et al. Enzyme cascades activated on topologically programmed DNA scaffolds. , 2009, Nature nanotechnology.
[140] Satoshi Murata,et al. Error suppression mechanisms for DNA tile self-assembly and their simulation , 2009, Natural Computing.
[141] Hao Yan,et al. In vivo cloning of artificial DNA nanostructures , 2008, Proceedings of the National Academy of Sciences.
[142] C. Mirkin,et al. Peptide antisense nanoparticles , 2008, Proceedings of the National Academy of Sciences.
[143] Stan J. J. Brouns,et al. Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes , 2008, Science.
[144] Itamar Willner,et al. DNAzymes for sensing, nanobiotechnology and logic gate applications. , 2008, Chemical Society reviews.
[145] C. Mao,et al. Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra , 2008, Nature.
[146] Frédéric Dardel,et al. Recombinant RNA technology: the tRNA scaffold , 2007, Nature Methods.
[147] R. Weiss,et al. A universal RNAi-based logic evaluator that operates in mammalian cells , 2007, Nature Biotechnology.
[148] Lorian Schaeffer,et al. A synthetic maternal-effect selfish genetic element drives population replacement in Drosophila. , 2007, Science.
[149] G. Seelig,et al. Enzyme-Free Nucleic Acid Logic Circuits , 2022 .
[150] Farren J. Isaacs,et al. RNA synthetic biology , 2006, Nature Biotechnology.
[151] P. Rothemund. Folding DNA to create nanoscale shapes and patterns , 2006, Nature.
[152] Russell P. Goodman,et al. Rapid Chiral Assembly of Rigid DNA Building Blocks for Molecular Nanofabrication , 2005, Science.
[153] Itamar Willner,et al. Endonuclease-based logic gates and sensors using magnetic force-amplified readout of DNA scission on cantilevers. , 2005, Journal of the American Chemical Society.
[154] J. Macdonald,et al. Deoxyribozyme-based ligase logic gates and their initial circuits. , 2005, Journal of the American Chemical Society.
[155] Travis S. Bayer,et al. Programmable ligand-controlled riboregulators of eukaryotic gene expression , 2005, Nature Biotechnology.
[156] Robert M. Dirks,et al. Triggered amplification by hybridization chain reaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[157] Farren J. Isaacs,et al. Engineered riboregulators enable post-transcriptional control of gene expression , 2004, Nature Biotechnology.
[158] R. Breaker,et al. Control of gene expression by a natural metabolite-responsive ribozyme , 2004, Nature.
[159] Yan Liu,et al. DNA-Templated Self-Assembly of Protein Arrays and Highly Conductive Nanowires , 2003, Science.
[160] Darko Stefanovic,et al. Deoxyribozyme-based logic gates. , 2002, Journal of the American Chemical Society.
[161] J. Reif,et al. Logical computation using algorithmic self-assembly of DNA triple-crossover molecules , 2000, Nature.
[162] Lloyd M. Smith,et al. DNA computing on surfaces , 2000, Nature.
[163] Jules Moreau,et al. Molecular Computation by DNA Hairpin Formation , 2000 .
[164] Li Hu. Technologies and Applications of IC card , 1999 .
[165] N. Seeman,et al. Design and self-assembly of two-dimensional DNA crystals , 1998, Nature.
[166] Gregory S. Snider,et al. A Defect-Tolerant Computer Architecture: Opportunities for Nanotechnology , 1998 .
[167] P D Kaplan,et al. DNA solution of the maximal clique problem. , 1997, Science.
[168] J. Storhoff,et al. A DNA-based method for rationally assembling nanoparticles into macroscopic materials , 1996, Nature.
[169] R J Lipton,et al. DNA solution of hard computational problems. , 1995, Science.
[170] L M Adleman,et al. Molecular computation of solutions to combinatorial problems. , 1994, Science.