Ab initio and DFT study of 31P-NMR chemical shifts of sphingomyelin and dihydrosphingomyelin lipid molecule

One of the phospholipids, sphingomyelin (SM, N-acyl-sphingosine-1-phosphorylcholine) is the most abundant component of mammalian membranes in brain, nervous tissues, and human ocular lens. It plays an important role for apoptosis, aging, and signal transduction. Recently, Yappert and coworkers have shown that human lens sphingomyelin and its hydrogenated derivative, dihydrosphingomyelin (DHSM) are interacted with Ca2+ ions to develop human cataracts. Previously, we have investigated conformational differences between an isolated SM/DHSM molecule and Ca2+-coordinated form by using density functional theory (DFT) for geometry optimization and normal mode analysis. As a result, one of stable conformers of SMs has a hydrogen bonding between hydroxyl group and phosphate group, whereas another conformer has a hydrogen bonding between hydroxyl and phosphate amide group. In this study, 31P-Nuclear Magnetic Resonance (NMR) shielding constants of the obtained conformers are investigated by using ab initio and DFT with NMR-gauge invariant atomic orbitals (NMR-GIAO) calculations. The experimental 31P-NMR chemical shifts of SMs and DHSMs have significant small value around 0.1 ppm. We consider the relative conformational changes between SMs and DHSMs affect the slight deviations of 31P-NMR chemical shifts, and discuss intramolecular hydrogen bondings and the solvent effect in relation to NMR experimental reference. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009

[1]  Hiroyuki Kawabe,et al.  A DFT study of infrared spectrum of sphingomyelin lipid molecule with calcium cation , 2008 .

[2]  Mark S. Gordon,et al.  General atomic and molecular electronic structure system , 1993, J. Comput. Chem..

[3]  R. Ditchfield,et al.  Self-consistent perturbation theory of diamagnetism , 1974 .

[4]  S. R. Ferguson,et al.  Confirmation of the identity of the major phospholipid in human lens membranes. , 1996, Investigative ophthalmology & visual science.

[5]  S. Gandolfi,et al.  Human lens membrane cation permeability increases with age. , 1989, Investigative ophthalmology & visual science.

[6]  A. Becke Density-functional thermochemistry. III. The role of exact exchange , 1993 .

[7]  M. Frisch,et al.  Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields , 1994 .

[8]  D. Borchman,et al.  Interactions of Ca(2+) with sphingomyelin and dihydrosphingomyelin. , 2002, Biophysical journal.

[9]  D. Borchman,et al.  Sphingolipids in human lens membranes: an update on their composition and possible biological implications. , 2004, Chemistry and physics of lipids.

[10]  J. Slotte,et al.  The functional role of sphingomyelin in cell membranes , 2007 .

[11]  A. D. McLean,et al.  Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z=11–18 , 1980 .

[12]  R. M. Broekhuyse Membrane Lipids and Proteins in Ageing Lens and Cataract , 2008 .

[13]  G. Vrensen,et al.  Influence of age, diabetes, and cataract on calcium, lipid-calcium, and protein-calcium relationships in human lenses. , 2003, Investigative ophthalmology & visual science.

[14]  J. Pople,et al.  Self‐consistent molecular orbital methods. XX. A basis set for correlated wave functions , 1980 .

[15]  Jacopo Tomasi,et al.  A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to isotropic and anisotropic dielectrics , 1997 .

[16]  J. Tomasi,et al.  Electrostatic interaction of a solute with a continuum. A direct utilizaion of AB initio molecular potentials for the prevision of solvent effects , 1981 .

[17]  Peter Pulay,et al.  Efficient implementation of the gauge-independent atomic orbital method for NMR chemical shift calculations , 1990 .

[18]  Parr,et al.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. , 1988, Physical review. B, Condensed matter.

[19]  K. Bruzik,et al.  Conformation of the polar headgroup of sphingomyelin and its analogues. , 1988, Biochimica et biophysica acta.

[20]  I. Vorobyov,et al.  Conformational studies of sphingolipids by NMR spectroscopy. II. Sphingomyelin. , 2000, Biochimica et biophysica acta.

[21]  H. Flowers,et al.  Studies on Sphingolipids. VII. Synthesis and Configuration of Natural Sphingomyelins , 1962 .