Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes.

Four butyrate-producing isolates were obtained from the caecal content of a 4-week-old broiler chicken. The 16S rRNA gene sequences were determined and confirmed the close relatedness of the four isolates, which suggested that they were derived from a single bacterial clone. Phylogenetic analysis based on 16S rRNA gene sequences showed that its closest relatives were members of cluster XIVa of the Clostridium subphylum of Gram-positive bacteria and that the closest related type strain was Anaerostipes caccae L1-92(T) (94.5 % similarity). Similarity levels of 96-98 % with sequences from uncultured bacteria from human stool samples were observed. On the basis of morphological, biochemical and phylogenetic characteristics, this strain is assigned to a novel species in the genus Anaerostipes, for which the name Anaerostipes butyraticus sp. nov. is proposed. The type strain is 35-7(T) (=LMG 24724(T) =DSM 22094(T)). An emended description of the genus Anaerostipes is also provided.

[1]  C. V. Van Nevel,et al.  A simple method for the simultaneous determination of gas production and volatile fatty acid concentration in the rumen. , 2009, Zeitschrift fur Tierphysiologie, Tierernahrung und Futtermittelkunde.

[2]  P. Vandamme,et al.  Butyricicoccus pullicaecorum gen. nov., sp. nov., an anaerobic, butyrate-producing bacterium isolated from the caecal content of a broiler chicken. , 2008, International journal of systematic and evolutionary microbiology.

[3]  J. Doré,et al.  Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients , 2008, Proceedings of the National Academy of Sciences.

[4]  S. Polak‐Charcon,et al.  Isolation and characterisation of new putative probiotic bacteria from human colonic flora. , 2007, The British journal of nutrition.

[5]  P. Turnbaugh,et al.  Microbial ecology: Human gut microbes associated with obesity , 2006, Nature.

[6]  S. Brooks,et al.  Dietary fructooligosaccharides alter the cultivable faecal population of rats but do not stimulate the growth of intestinal bifidobacteria. , 2006, Canadian journal of microbiology.

[7]  S. Citi,et al.  Histone deacetylase inhibitors up-regulate the expression of tight junction proteins. , 2004, Molecular cancer research : MCR.

[8]  H. Flint,et al.  Restricted Distribution of the Butyrate Kinase Pathway among Butyrate-Producing Bacteria from the Human Colon , 2004, Journal of bacteriology.

[9]  H. Lührs,et al.  Expression of the cathelicidin LL-37 is modulated by short chain fatty acids in colonocytes: relevance of signalling pathways , 2003, Gut.

[10]  T. Coenye,et al.  Comparative Assessment of Genotyping Methods for Epidemiologic Study of Burkholderia cepacia Genomovar III , 2002, Journal of Clinical Microbiology.

[11]  P. Clifton,et al.  Short-chain fatty acids and human colonic function: roles of resistant starch and nonstarch polysaccharides. , 2001, Physiological reviews.

[12]  P. W. van der Wielen,et al.  Role of Volatile Fatty Acids in Development of the Cecal Microflora in Broiler Chickens during Growth , 2000, Applied and Environmental Microbiology.

[13]  H. Flint,et al.  Phylogenetic Relationships of Butyrate-Producing Bacteria from the Human Gut , 2000, Applied and Environmental Microbiology.

[14]  J. Chayvialle,et al.  Mucin secretion is modulated by luminal factors in the isolated vascularly perfused rat colon , 2000, Gut.

[15]  P. Vandamme,et al.  Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. , 1999, International journal of systematic bacteriology.

[16]  H. Flint,et al.  Degradation and utilization of xylans by the rumen anaerobe Prevotella bryantii (formerly P. ruminicola subsp. brevis) B(1)4. , 1997, Anaerobe.

[17]  J. Mariadason,et al.  Effect of short-chain fatty acids on paracellular permeability in Caco-2 intestinal epithelium model. , 1997, The American journal of physiology.

[18]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[19]  P. Lawson,et al.  The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. , 1994, International journal of systematic bacteriology.

[20]  S. Goodison,et al.  16S ribosomal DNA amplification for phylogenetic study , 1991, Journal of bacteriology.

[21]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[22]  M. Kimura A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences , 1980, Journal of Molecular Evolution.

[23]  C. V. Van Nevel,et al.  Effect of monensin on rumen metabolism in vitro , 1977, Applied and environmental microbiology.

[24]  J. Bartholomew,et al.  A simplified bacterial spore stain. , 1950, Stain technology.

[25]  Luying Peng,et al.  Effects of Butyrate on Intestinal Barrier Function in a Caco-2 Cell Monolayer Model of Intestinal Barrier , 2007, Pediatric Research.

[26]  A. Selim Molecular Techniques for Analyzing Chicken Microbiota , 2006 .

[27]  P. Lawson,et al.  Anaerostipes caccae gen. nov., sp. nov., a new saccharolytic, acetate-utilising, butyrate-producing bacterium from human faeces. , 2002, Systematic and applied microbiology.

[28]  J. Lupski,et al.  Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction , 1994 .