A Boolean network model of human gonadal sex determination

BackgroundGonadal sex determination (GSD) in humans is a complex biological process that takes place in early stages of embryonic development when the bipotential gonadal primordium (BGP) differentiates towards testes or ovaries. This decision is directed by one of two distinct pathways embedded in a GSD network activated in a population of coelomic epithelial cells, the Sertoli progenitor cells (SPC) and the granulosa progenitor cells (GPC). In males, the pathway is activated when the Sex-Determining Region Y (SRY) gene starts to be expressed, whereas in females the WNT4/ β-catenin pathway promotes the differentiation of the GPCs towards ovaries. The interactions and dynamics of the elements that constitute the GSD network are poorly understood, thus our group is interested in inferring the general architecture of this network as well as modeling the dynamic behavior of a set of genes associated to this process under wild-type and mutant conditions.MethodsWe reconstructed the regulatory network of GSD with a set of genes directly associated with the process of differentiation from SPC and GPC towards Sertoli and granulosa cells, respectively. These genes are experimentally well-characterized and the effects of their deficiency have been clinically reported. We modeled this GSD network as a synchronous Boolean network model (BNM) and characterized its attractors under wild-type and mutant conditions.ResultsThree attractors with a clear biological meaning were found; one of them corresponding to the currently known gene expression pattern of Sertoli cells, the second correlating to the granulosa cells and, the third resembling a disgenetic gonad.ConclusionsThe BNM of GSD that we present summarizes the experimental data on the pathways for Sertoli and granulosa establishment and sheds light on the overall behavior of a population of cells that differentiate within the developing gonad. With this model we propose a set of regulatory interactions needed to activate either the SRY or the WNT4/ β-catenin pathway as well as their downstream targets, which are critical for further sex differentiation. In addition, we observed a pattern of altered regulatory interactions and their dynamics that lead to some disorders of sex development (DSD).

[1]  A. Kania,et al.  Requirement of Lim1 for female reproductive tract development , 2004, Development.

[2]  R. Behringer,et al.  Lhx1 is required in Müllerian duct epithelium for uterine development. , 2014, Developmental biology.

[3]  K. McElreavey,et al.  Loss-of-function mutation in GATA4 causes anomalies of human testicular development , 2011, Proceedings of the National Academy of Sciences.

[4]  Yoshiakira Kanai,et al.  Early gonadogenesis in mammals: Significance of long and narrow gonadal structure , 2013, Developmental dynamics : an official publication of the American Association of Anatomists.

[5]  K. H. Albrecht,et al.  Evidence that Sry is expressed in pre-Sertoli cells and Sertoli and granulosa cells have a common precursor. , 2001, Developmental biology.

[6]  Steven C. Munger,et al.  Temporal Transcriptional Profiling of Somatic and Germ Cells Reveals Biased Lineage Priming of Sexual Fate in the Fetal Mouse Gonad , 2012, PLoS genetics.

[7]  D. Wilhelm,et al.  The Wilms tumor suppressor WT1 regulates early gonad development by activation of Sf1. , 2002, Genes & development.

[8]  S. Tevosian,et al.  To β or not to β: Canonical β‐catenin signaling pathway and ovarian development , 2008, Developmental dynamics : an official publication of the American Association of Anatomists.

[9]  P. de Santa Barbara,et al.  Expression and subcellular localization of SF‐1, SOX9, WT1, and AMH proteins during early human testicular development , 2000, Developmental dynamics : an official publication of the American Association of Anatomists.

[10]  J. Hutson,et al.  Comprar Disorders Of Sex Development, An Integrated Approach To Management | John M. Hutson | 9783642229633 | Springer , 2012 .

[11]  G. Saunders,et al.  PAX 8 Regulates Human WT1 Transcription through a Novel DNA Binding Site* , 1997, The Journal of Biological Chemistry.

[12]  M. Taketo,et al.  Stabilization of beta-catenin in XY gonads causes male-to-female sex-reversal. , 2008, Human molecular genetics.

[13]  A. Sinclair,et al.  Mammalian sex determination—insights from humans and mice , 2012, Chromosome Research.

[14]  P. Goodfellow,et al.  Evidence for increased prevalence of SRY mutations in XY females with complete rather than partial gonadal dysgenesis. , 1992, American journal of human genetics.

[15]  H. Taniguchi,et al.  A GATA4/WT1 cooperation regulates transcription of genes required for mammalian sex determination and differentiation , 2008, BMC Molecular Biology.

[16]  E. Kousta,et al.  Sex determination and disorders of sex development according to the revised nomenclature and classification in 46,XX individuals , 2010, Hormones.

[17]  L. Looger,et al.  Fine Time Course Expression Analysis Identifies Cascades of Activation and Repression and Maps a Putative Regulator of Mammalian Sex Determination , 2013, PLoS genetics.

[18]  H. Cunliffe,et al.  Differential regulation of the human Wilms tumour suppressor gene (WT1) promoter by two isoforms of PAX2 , 1997, Oncogene.

[19]  I. Mazen,et al.  AMH Gene Mutations in Two Egyptian Families with Persistent Müllerian Duct Syndrome , 2011, Sexual Development.

[20]  Y. Sajjad Development of the genital ducts and external genitalia in the early human embryo , 2010, The journal of obstetrics and gynaecology research.

[21]  H. Yao,et al.  How to Make a Gonad: Cellular Mechanisms Governing Formation of the Testes and Ovaries , 2012, Sexual Development.

[22]  Makoto Ono,et al.  Disorders of sex development: new genes, new concepts , 2013, Nature Reviews Endocrinology.

[23]  David I. Wilson,et al.  SRY, SOX9, and DAX1 expression patterns during human sex determination and gonadal development , 2000, Mechanisms of Development.

[24]  J. Tremblay,et al.  A Mutated Form of Steroidogenic Factor 1 (SF-1 G35E) That Causes Sex Reversal in Humans Fails to Synergize with Transcription Factor GATA-4* , 2003, Journal of Biological Chemistry.

[25]  B. Mendonca,et al.  46,XY disorders of sex development (DSD) , 2009, Clinical endocrinology.

[26]  Assieh Saadatpour,et al.  Boolean modeling of biological regulatory networks: a methodology tutorial. , 2013, Methods.

[27]  J. Hutson Embryology of the Human Genital Tract , 2020, Disorders|Differences of Sex Development.

[28]  J. Pelletier,et al.  The Wilms’ Tumor Suppressor Gene (wt1) Product Regulates Dax-1 Gene Expression during Gonadal Differentiation , 1999, Molecular and Cellular Biology.

[29]  A. Sinclair,et al.  The Molecular Basis of Gonadal Development and Disorders of Sex Development , 2012 .

[30]  M. Waterman,et al.  TCF/LEFs and Wnt signaling in the nucleus. , 2012, Cold Spring Harbor perspectives in biology.

[31]  B. Capel,et al.  Balancing the bipotential gonad between alternative organ fates: A new perspective on an old problem , 2006, Developmental dynamics : an official publication of the American Association of Anatomists.

[32]  R. Erickson,et al.  Clinical traits and molecular findings in 46,XX males , 1995, Clinical genetics.

[33]  Wan-Xi Yang,et al.  Molecular mechanisms involved in mammalian primary sex determination. , 2014, Journal of molecular endocrinology.

[34]  John C. Achermann,et al.  Disorders of sex development , 2009 .

[35]  E. Vilain,et al.  The endless quest for sex determination genes , 2004, Clinical genetics.

[36]  J. Jameson,et al.  Dax1 regulates testis cord organization during gonadal differentiation , 2003, Development.

[37]  Peter Koopman,et al.  Expression profiling of purified mouse gonadal somatic cells during the critical time window of sex determination reveals novel candidate genes for human sexual dysgenesis syndromes. , 2006, Human molecular genetics.

[38]  M. Sarraj,et al.  Mammalian foetal ovarian development: consequences for health and disease. , 2012, Reproduction.

[39]  A. Grüters,et al.  Analysis of the Wilms' tumor suppressor gene (WT1) in patients 46,XY disorders of sex development. , 2011, The Journal of clinical endocrinology and metabolism.

[40]  Guy Karlebach,et al.  Modelling and analysis of gene regulatory networks , 2008, Nature Reviews Molecular Cell Biology.

[41]  Luis Mendoza,et al.  The Arabidopsis thaliana flower organ specification gene regulatory network determines a robust differentiation process. , 2010, Journal of theoretical biology.

[42]  H. Othmer,et al.  The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster. , 2003, Journal of theoretical biology.

[43]  J. Staaf,et al.  Isolated 46,XY gonadal dysgenesis in two sisters caused by a Xp21.2 interstitial duplication containing the DAX1 gene. , 2007, The Journal of clinical endocrinology and metabolism.

[44]  D. Page,et al.  Gata4 Is Required for Formation of the Genital Ridge in Mice , 2013, PLoS genetics.

[45]  H. Stoop,et al.  FOXL2 and SOX9 as parameters of female and male gonadal differentiation in patients with various forms of disorders of sex development (DSD) , 2008, The Journal of pathology.

[46]  S. Ahmed,et al.  Consensus Statement on Management of Intersex Disorders , 2006, Pediatrics.

[47]  V. Harley,et al.  The molecular action and regulation of the testis-determining factors, SRY (sex-determining region on the Y chromosome) and SOX9 [SRY-related high-mobility group (HMG) box 9]. , 2003, Endocrine reviews.

[48]  D. Gerrelli,et al.  Human RSPO1/R-spondin1 Is Expressed during Early Ovary Development and Augments β-Catenin Signaling , 2011, PloS one.

[49]  H. Kestler,et al.  A Boolean Model of the Cardiac Gene Regulatory Network Determining First and Second Heart Field Identity , 2012, PloS one.

[50]  V. Harley,et al.  Sex determination: a ‘window’ of DAX1 activity , 2004, Trends in Endocrinology & Metabolism.

[51]  P. Koopman,et al.  Sry: the master switch in mammalian sex determination , 2010, Development.

[52]  C. Alves,et al.  46,XX male - testicular disorder of sexual differentiation (DSD): hormonal, molecular and cytogenetic studies. , 2010, Arquivos brasileiros de endocrinologia e metabologia.

[53]  S. Tevosian,et al.  Ovarian development in mice requires the GATA4-FOG2 transcription complex , 2008, Development.

[54]  Hans A. Kestler,et al.  BoolNet - an R package for generation, reconstruction and analysis of Boolean networks , 2010, Bioinform..

[55]  O. Söder,et al.  Origin, Development and Regulation of Human Leydig Cells , 2010, Hormone Research in Paediatrics.