Discovery of key regulators of dark gland development and hypericin biosynthesis in St. John's Wort (Hypericum perforatum)

Summary Hypericin is a molecule of high pharmaceutical importance that is synthesized and stored in dark glands (DGs) of St. John's Wort (Hypericum perforatum). Understanding which genes are involved in dark gland development and hypericin biosynthesis is important for the development of new Hypericum extracts that are highly demanded for medical applications. We identified two transcription factors whose expression is strictly synchronized with the differentiation of DGs. We correlated the content of hypericin, pseudohypericin, endocrocin, skyrin glycosides and several flavonoids with gene expression and DG development to obtain a revised model for hypericin biosynthesis. Here, we report for the first time genotypes which are polymorphic for the presence/total absence (G+/G−) of DGs in their placental tissues (PTs). DG development was characterized in PTs using several microscopy techniques. Fourier transform infrared microscopy was established as a novel method to precisely locate polyaromatic compounds, such as hypericin, in plant tissues. In addition, we obtained transcriptome and metabolome profiles of unprecedented resolution in Hypericum. This study addresses for the first time the development of dark glands and identifies genes that constitute strong building blocks for the further elucidation of hypericin synthesis, its manipulation in plants, its engineering in microbial systems and its applications in medical research.

[1]  J. D. Curtis,et al.  Internal secretory structures in Hypericum (Clusiaceae): H. perforatum L. and H. balearicum L. , 1990 .

[2]  M. Gill,et al.  Austrovenetin, the principal pigment of the toadstool Dermocybe austroveneta , 1991 .

[3]  E. Coen,et al.  The war of the whorls: genetic interactions controlling flower development , 1991, Nature.

[4]  I. Yamazaki,et al.  Excited-state properties of hypericin: electronic spectra and fluorescence decay kinetics , 1993 .

[5]  H. Falk,et al.  On the homo- and heteroassociation of hypericin , 1994 .

[6]  R. B. Fornasiero,et al.  Anatomical and Ultrastuctural Observations in Hypericum perforatum L. Leaves , 1998 .

[7]  Falk,et al.  From the Photosensitizer Hypericin to the Photoreceptor Stentorin- The Chemistry of Phenanthroperylene Quinones. , 1999, Angewandte Chemie.

[8]  A. Wirz,et al.  Bisanthraquinone glycosides of Hypericum perforatum with binding inhibition to CRH-1 receptors. , 2000, Phytochemistry.

[9]  de Vries GE Flavonoid biosynthetic pathway. , 2000, Trends in plant science.

[10]  P. Agostinis,et al.  Apoptotic and anti-apoptotic signaling pathways induced by photodynamic therapy with hypericin. , 2000, Advances in enzyme regulation.

[11]  R. Stracke,et al.  The R2R3-MYB gene family in Arabidopsis thaliana. , 2001, Current opinion in plant biology.

[12]  E. Álvarez-Buylla,et al.  Conversion of leaves into petals in Arabidopsis , 2001, Current Biology.

[13]  A. Oseroff,et al.  Mitochondria-based photodynamic anti-cancer therapy. , 2001, Advanced drug delivery reviews.

[14]  Koji Goto,et al.  Complexes of MADS-box proteins are sufficient to convert leaves into floral organs , 2001, Nature.

[15]  D. Ciccarelli,et al.  Translucent Glands and Secretory Canals in Hypericum perforatum L. (Hypericaceae): Morphological, Anatomical and Histochemical Studies During the Course of Ontogenesis , 2001 .

[16]  P. Agostinis,et al.  Hypericin in cancer treatment: more light on the way. , 2002, The international journal of biochemistry & cell biology.

[17]  F. Hevia,et al.  QUALITY AND YIELD IN ST. JOHN'S WORT (HYPERICUM PERFORATUM L.) HARVESTED IN DIFFERENT PHENOLOGICAL STAGES , 2002 .

[18]  E. Onelli,et al.  Ultrastructural studies on the developing secretory nodules of Hypericum perforatum , 2002 .

[19]  E. Ernst Hypericum: the genus Hypericum. , 2003 .

[20]  R. Hell,et al.  Discovery of an extended bundle sheath in Ricinus communis L. and its role as a temporal storage compartment for the iron chelator nicotianamine , 2003, Planta.

[21]  M. Schuler,et al.  Functional genomics of P450s. , 2003, Annual review of plant biology.

[22]  J. Vivanco,et al.  Molecular and Biochemical Characterization of an Enzyme Responsible for the Formation of Hypericin in St. John's Wort (Hypericum perforatum L.)* , 2003, Journal of Biological Chemistry.

[23]  Zhiwei Xu,et al.  Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 1 , 2004, Plant Molecular Biology.

[24]  S. Morimoto,et al.  The Gene Controlling Marijuana Psychoactivity , 2004, Journal of Biological Chemistry.

[25]  Ulrich Wagner,et al.  Probing the Diversity of the Arabidopsis glutathione S-Transferase Gene Family , 2002, Plant Molecular Biology.

[26]  O. Mattsson,et al.  Arabidopsis MYB68 in development and responses to environmental cues , 2004 .

[27]  Per Capita,et al.  About the authors , 1995, Machine Vision and Applications.

[28]  K. Theres,et al.  Blind Homologous R2R3 Myb Genes Control the Pattern of Lateral Meristem Initiation in Arabidopsis[W] , 2006, The Plant Cell Online.

[29]  E. Goto,et al.  Plant-environment interactions: Accumulation of hypericin in dark glands of Hypericum perforatum. , 2006, Annals of botany.

[30]  Erik L. L. Sonnhammer,et al.  Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server , 2007, Nucleic Acids Res..

[31]  S. Morimoto,et al.  Cannabidiolic‐acid synthase, the chemotype‐determining enzyme in the fiber‐type Cannabis sativa , 2007, FEBS letters.

[32]  A. Jäger,et al.  Hyperforin accumulates in the translucent glands of Hypericum perforatum. , 2007, Annals of botany.

[33]  P. A. Rea,et al.  Plant ABC proteins--a unified nomenclature and updated inventory. , 2008, Trends in plant science.

[34]  Katja Karppinen,et al.  Molecular cloning and tissue-specific expression of two cDNAs encoding polyketide synthases from Hypericum perforatum. , 2008, Journal of plant physiology.

[35]  A. Sgarbossa,et al.  In vitro perturbation of aggregation processes in β‐amyloid peptides: A spectroscopic study , 2008, FEBS letters.

[36]  P. Neubauer,et al.  Octaketide‐producing type III polyketide synthase from Hypericum perforatum is expressed in dark glands accumulating hypericins , 2008, The FEBS journal.

[37]  Y. Ho,et al.  Lipid-mediated preferential localization of hypericin in lipid membranes. , 2009, Biochimica et biophysica acta.

[38]  Hirohiko Hirochika,et al.  MOSAIC FLORAL ORGANS1, an AGL6-Like MADS Box Gene, Regulates Floral Organ Identity and Meristem Fate in Rice[W] , 2009, The Plant Cell Online.

[39]  Ulrich S Schubert,et al.  Matrix-free UV-laser desorption/ionization (LDI) mass spectrometric imaging at the single-cell level: distribution of secondary metabolites of Arabidopsis thaliana and Hypericum species. , 2009, The Plant journal : for cell and molecular biology.

[40]  Eun-Jeong Lee,et al.  Norcoclaurine Synthase Is a Member of the Pathogenesis-Related 10/Bet v1 Protein Family[W] , 2010, Plant Cell.

[41]  L. Altschmied,et al.  Identification and genetic analysis of the APOSPORY locus in Hypericum perforatum L. , 2010, The Plant journal : for cell and molecular biology.

[42]  T. Sharbel,et al.  The cytohistological basis of apospory in Hypericum perforatum L. , 2011, Sexual Plant Reproduction.

[43]  E. Bramanti,et al.  Effects of hypericin on the structure and aggregation properties of β-amyloid peptides , 2010, European Biophysics Journal.

[44]  R. Edwards,et al.  Roles for glutathione transferases in plant secondary metabolism. , 2010, Phytochemistry.

[45]  P. Agostinis,et al.  Photodynamic therapy: illuminating the road from cell death towards anti-tumour immunity , 2010, Apoptosis.

[46]  T. Viaene,et al.  Expression divergence of the AGL6 MADS domain transcription factor lineage after a core eudicot duplication suggests functional diversification , 2010, BMC Plant Biology.

[47]  N. Friedman,et al.  Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.

[48]  Marcel Martin Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[49]  S. Crockett,et al.  Taxonomy and Chemotaxonomy of the Genus Hypericum. , 2011, Medicinal and aromatic plant science and biotechnology.

[50]  Abhishek D. Garg,et al.  Hypericin-based photodynamic therapy induces surface exposure of damage-associated molecular patterns like HSP70 and calreticulin , 2012, Cancer Immunology, Immunotherapy.

[51]  M. Saier,et al.  The major facilitator superfamily (MFS) revisited , 2012, The FEBS journal.

[52]  H. Heinze,et al.  Reduced Alzheimer's disease pathology by St. John's Wort treatment is independent of hyperforin and facilitated by ABCC1 and microglia activation in mice. , 2013, Current Alzheimer research.

[53]  P. Vandenabeele,et al.  Many faces of DAMPs in cancer therapy , 2013, Cell Death and Disease.

[54]  Andrea Porzel,et al.  Metabolite profiling and fingerprinting of Hypericum species: a comparison of MS and NMR metabolomics , 2013, Metabolomics.

[55]  T. Sharbel,et al.  Evolution of cryptic gene pools in Hypericum perforatum: the influence of reproductive system and gene flow. , 2013, Annals of botany.

[56]  Kazuki Saito,et al.  The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity. , 2013, Plant physiology and biochemistry : PPB.

[57]  S. Fujiwara,et al.  Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis , 2014, Biotechnology Letters.

[58]  P. Facchini,et al.  Functional diversity of 2-oxoglutarate/Fe(II)-dependent dioxygenases in plant metabolism , 2014, Front. Plant Sci..

[59]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[60]  T. Sharbel,et al.  Biogeographic variation in genetic variability, apomixis expression and ploidy of St. John's wort (Hypericum perforatum) across its native and introduced range. , 2014, Annals of botany.

[61]  So-Young Park,et al.  Hypericins: biotechnological production from cell and organ cultures , 2014, Applied Microbiology and Biotechnology.

[62]  Jian Zhao Flavonoid transport mechanisms: how to go, and with whom. , 2015, Trends in plant science.

[63]  M. Spiteller,et al.  Spatial chemo-profiling of hypericin and related phytochemicals in Hypericum species using MALDI-HRMS imaging , 2015, Analytical and Bioanalytical Chemistry.

[64]  Erin E. Sparks,et al.  MYB36 regulates the transition from proliferation to differentiation in the Arabidopsis root , 2015, Proceedings of the National Academy of Sciences.

[65]  A. Papageorgiou,et al.  Plant GSTome: structure and functional role in xenome network and plant stress response. , 2015, Current opinion in biotechnology.

[66]  P. Agostinis,et al.  Melanoma targeting with the loco-regional chemotherapeutic, Melphalan: From cell death to immunotherapeutic efficacy , 2015, Oncoimmunology.

[67]  E. Čellárová,et al.  Interspecific variation in localization of hypericins and phloroglucinols in the genus Hypericum as revealed by desorption electrospray ionization mass spectrometry imaging. , 2016, Physiologia plantarum.

[68]  E. Čellárová,et al.  Comparative Transcriptome Reconstruction of Four Hypericum Species Focused on Hypericin Biosynthesis , 2016, Front. Plant Sci..

[69]  L. Altschmied,et al.  Differentially Expressed Genes in Hypericin-Containing Hypericum perforatum Leaf Tissues as Revealed by De Novo Assembly of RNA-Seq , 2016, Plant Molecular Biology Reporter.

[70]  K. Kaufmann,et al.  Molecular mechanisms of floral organ specification by MADS domain proteins. , 2016, Current opinion in plant biology.

[71]  Katja Karppinen,et al.  Molecular Cloning and Expression Analysis of hyp-1 Type PR-10 Family Genes in Hypericum perforatum , 2016, Front. Plant Sci..

[72]  Paride Rizzo Novel insights on female gametophyte development in the apomictic model species Boechera spp. and Hypericum spp. , 2016 .

[73]  Lior Pachter,et al.  Near-optimal probabilistic RNA-seq quantification , 2016, Nature Biotechnology.

[74]  H. Rolletschek,et al.  A functional imaging study of germinating oilseed rape seed. , 2017, The New phytologist.

[75]  A. Winkler,et al.  The family of berberine bridge enzyme-like enzymes: A treasure-trove of oxidative reactions. , 2017, Archives of biochemistry and biophysics.

[76]  E. Čellárová,et al.  Phenotyping the genus Hypericum by secondary metabolite profiling: emodin vs. skyrin, two possible key intermediates in hypericin biosynthesis , 2018, Analytical and Bioanalytical Chemistry.