From conformational spread to allosteric and cooperative models of E. coli flagellar motor

Escherichia coli swims using flagella activated by rotary motors. The direction of rotation of the motors is indirectly regulated by the binding of a single messenger protein. The conformational spread model has been shown to accurately describe the equilibrium properties as well as the dynamics of the flagellar motor. In this paper we study this model from an analytic point of view. By exploiting the separation of timescales observed in experiments, we show how to reduce the conformational spread model to a coarse-grained, cooperative binding model. We show that this simplified model reproduces very well the dynamics of the motor switch.

[1]  S. Redner,et al.  A Kinetic View of Statistical Physics , 2010 .

[2]  T. Duke,et al.  COOPERATIVE MODEL OF BACTERIAL SENSING , 1998, physics/9901052.

[3]  T. Duke,et al.  Heightened sensitivity of a lattice of membrane receptors. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[4]  W. Marsden I and J , 2012 .

[5]  Sarah Marzen,et al.  Statistical mechanics of Monod-Wyman-Changeux (MWC) models. , 2013, Journal of molecular biology.

[6]  R. Rosenfeld Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

[7]  Howard C. Berg,et al.  Adaptation at the output of the chemotaxis signalling pathway , 2012, Nature.

[8]  Xiao-lun Wu,et al.  An Element of Determinism in a Stochastic Flagellar Motor Switch , 2015, PloS one.

[9]  G. Rosser,et al.  Signal-dependent turnover of the bacterial flagellar switch protein FliM , 2010, Proceedings of the National Academy of Sciences.

[10]  Dan V. Nicolau,et al.  Conformational Spread in the Flagellar Motor Switch: A Model Study , 2012, PLoS Comput. Biol..

[11]  H. Berg The rotary motor of bacterial flagella. , 2003, Annual review of biochemistry.

[12]  Miss A.O. Penney (b) , 1974, The New Yale Book of Quotations.

[13]  H. Berg,et al.  Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[14]  Dennis Bray,et al.  Molecular model of a lattice of signalling proteins involved in bacterial chemotaxis , 2000, Nature Cell Biology.

[15]  N Le Novère,et al.  Conformational spread in a ring of proteins: a stochastic approach to allostery. , 2001, Journal of molecular biology.

[16]  郭鹏 Nature Cell Biology:控制前列腺癌进展和转移的代谢总开关 , 2016 .

[17]  L. Christophorou Science , 2018, Emerging Dynamics: Science, Energy, Society and Values.

[18]  Dan V. Nicolau,et al.  Conformational Spread as a Mechanism for Cooperativity in the Bacterial Flagellar Switch , 2010, Science.

[19]  Uri Alon,et al.  Response regulator output in bacterial chemotaxis , 1998, The EMBO journal.

[20]  Howard C. Berg,et al.  Mechanism for adaptive remodeling of the bacterial flagellar switch , 2012, Proceedings of the National Academy of Sciences.

[21]  E. Weinan Principles of Multiscale Modeling , 2011 .

[22]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[23]  Grigorios A. Pavliotis,et al.  Multiscale Methods: Averaging and Homogenization , 2008 .

[24]  J. Changeux,et al.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL. , 1965, Journal of molecular biology.