Persistence of single species of symbionts across multiple closely-related host species

[1]  A. Sweet,et al.  Comparing rates of introgression in parasitic feather lice with differing dispersal capabilities , 2019, Communications biology.

[2]  P. Klimov,et al.  Cox1 barcoding versus multilocus species delimitation: validation of two mite species with contrasting effective population sizes , 2019, Parasites & Vectors.

[3]  R. Jovani,et al.  Unexpected bird–feather mite associations revealed by DNA metabarcoding uncovers a dynamic ecoevolutionary scenario , 2019, Molecular ecology.

[4]  A. Sweet,et al.  The role of parasite dispersal in shaping a host–parasite system at multiple evolutionary scales , 2018, Molecular ecology.

[5]  V. Hypša,et al.  Host specificity driving genetic structure and diversity in ectoparasite populations: Coevolutionary patterns in Apodemus mice and their lice , 2018, Ecology and evolution.

[6]  S. Dray,et al.  Supervised Multiblock Analysis in R with the ade4 Package , 2018 .

[7]  R. Jovani,et al.  Enabling large-scale feather mite studies: an Illumina DNA metabarcoding pipeline , 2018, Experimental and Applied Acarology.

[8]  K. McCoy,et al.  “More Than Meets the Eye”: Cryptic Diversity and Contrasting Patterns of Host-Specificity in Feather Mites Inhabiting Seabirds , 2018, Front. Ecol. Evol..

[9]  B. Doligez,et al.  Gene flow and adaptive potential in a generalist ectoparasite , 2018, BMC Evolutionary Biology.

[10]  R. Jovani,et al.  Evidence of cryptic species in the genus Tinaminyssus (Acari: Rhinonyssidae) based on morphometrical and molecular data , 2018, Experimental and Applied Acarology.

[11]  T. Evans,et al.  Rampant Host Switching Shaped the Termite Gut Microbiome , 2018, Current Biology.

[12]  R. Jovani,et al.  Host specificity, infrequent major host switching and the diversification of highly host-specific symbionts: The case of vane-dwelling feather mites , 2018 .

[13]  I. de la Hera,et al.  High diversity and low genetic structure of feather mites associated with a phenotypically variable bird host , 2018, Parasitology.

[14]  Julie M. Allen,et al.  Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution , 2018, Evolution; international journal of organic evolution.

[15]  L. H. Liow,et al.  Finding Evolutionary Processes Hidden in Cryptic Species. , 2017, Trends in ecology & evolution.

[16]  R. Jovani,et al.  Cophylogenetic analyses reveal extensive host-shift speciation in a highly specialized and host-specific symbiont system. , 2017, Molecular phylogenetics and evolution.

[17]  R. Jovani,et al.  Vertical transmission in feather mites: insights into its adaptive value , 2017 .

[18]  A. Leaché,et al.  Discordance between genomic divergence and phenotypic variation in a rapidly evolving avian genus (Motacilla). , 2017, Molecular phylogenetics and evolution.

[19]  R. Jovani,et al.  Global associations between birds and vane-dwelling feather mites. , 2016, Ecology.

[20]  D. Clayton,et al.  Coevolution of Life on Hosts: Integrating Ecology and History , 2015 .

[21]  R. Jovani,et al.  Species mtDNA genetic diversity explained by infrapopulation size in a host‐symbiont system , 2015, Ecology and evolution.

[22]  R. Jovani,et al.  DNA barcoding and minibarcoding as a powerful tool for feather mite studies , 2015, Molecular ecology resources.

[23]  P. Parker,et al.  Lineage sorting in multihost parasites: Eidmanniella albescens and Fregatiella aurifasciata on seabirds from the Galapagos Islands , 2015, Ecology and evolution.

[24]  Zhian N. Kamvar,et al.  Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality , 2015, Front. Genet..

[25]  S. Coulson,et al.  Differences in speciation progress in feather mites (Analgoidea) inhabiting the same host: the case of Zachvatkinia and Alloptes living on arctic and long-tailed skuas , 2014, Experimental and Applied Acarology.

[26]  Brian Bushnell,et al.  BBMap: A Fast, Accurate, Splice-Aware Aligner , 2014 .

[27]  Zhian N. Kamvar,et al.  Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction , 2014, PeerJ.

[28]  K. Katoh,et al.  MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.

[29]  D. Ebert,et al.  THE ORIGIN OF SPECIFICITY BY MEANS OF NATURAL SELECTION: EVOLVED AND NONHOST RESISTANCE IN HOST–PATHOGEN INTERACTIONS , 2013, Evolution; international journal of organic evolution.

[30]  S. Boyer,et al.  Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding , 2012, Molecular ecology resources.

[31]  Shane S. Sturrock,et al.  Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..

[32]  A. Lambert,et al.  ABGD, Automatic Barcode Gap Discovery for primary species delimitation , 2012, Molecular ecology.

[33]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[34]  J. Lack,et al.  Demographic history and incomplete lineage sorting obscure population genetic structure of the Texas mouse (Peromyscus attwateri) , 2010 .

[35]  E. Paradis pegas: an R package for population genetics with an integrated-modular approach , 2010, Bioinform..

[36]  Toni Gabaldón,et al.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..

[37]  D. Clayton,et al.  Host Specialization Differentiates Cryptic Species of Feather-Feeding Lice , 2009, Evolution; international journal of organic evolution.

[38]  R. Zink,et al.  Mitochondrial DNA under siege in avian phylogeography , 2008, Molecular ecology.

[39]  Anne-Béatrice Dufour,et al.  The ade4 Package: Implementing the Duality Diagram for Ecologists , 2007 .

[40]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[41]  Daniel H. Janzen,et al.  DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists , 2007, Proceedings of the National Academy of Sciences.

[42]  Gaurav Vaidya,et al.  DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. , 2006, Systematic biology.

[43]  Y. Michalakis,et al.  Recurrent evolution of host-specialized races in a globally distributed parasite , 2005, Proceedings of the Royal Society B: Biological Sciences.

[44]  R. Poulin,et al.  Speciation in parasites: a population genetics approach. , 2005, Trends in parasitology.

[45]  R. Poulin,et al.  Molecular ecology of parasites: elucidating ecological and microevolutionary processes , 2005, Molecular ecology.

[46]  J. Banks,et al.  Multi-host parasite species in cophylogenetic studies. , 2005, International journal for parasitology.

[47]  R. Arlettaz,et al.  Causal mechanisms underlying host specificity in bat ectoparasites , 2004, Oecologia.

[48]  H. Proctor Feather mites (Acari: Astigmata): ecology, behavior, and evolution. , 2003, Annual review of entomology.

[49]  R. Page,et al.  When do parasites fail to speciate in response to host speciation? , 2003, Systematic biology.

[50]  Y. Michalakis,et al.  HOST‐DEPENDENT GENETIC STRUCTURE OF PARASITE POPULATIONS: DIFFERENTIAL DISPERSAL OF SEABIRD TICK HOST RACES , 2003, Evolution; international journal of organic evolution.

[51]  M. Forbes,et al.  Host range and local parasite adaptation , 2002, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[52]  B. Williams,et al.  The population genetics of host specificity: genetic differentiation in dove lice (Insecta: Phthiraptera) , 2002, Molecular ecology.

[53]  Y. Michalakis,et al.  Host specificity of a generalist parasite: genetic evidence of sympatric host races in the seabird tick Ixodes uriae , 2001 .

[54]  Jerilyn A. Walker,et al.  Preparation of PCR-quality mouse genomic DNA with hot sodium hydroxide and tris (HotSHOT). , 2000, BioTechniques.

[55]  R. Mrsny,et al.  Choice of microcentrifuge tubes influences T cell proliferation assay. , 2000, BioTechniques.

[56]  D. Ebert Experimental evolution of parasites. , 1998, Science.

[57]  D. Norton,et al.  Mistletoes as parasites: Host specificity and speciation. , 1998, Trends in ecology & evolution.

[58]  R. Poulin Evolutionary Ecology of Parasites , 1997 .

[59]  J. D. Fry Trade-Offs in Fitness on Different Hosts: Evidence from a Selection Experiment with a Phytophagous Mite , 1990, The American Naturalist.

[60]  F. Tajima Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.

[61]  M. Nei Molecular Evolutionary Genetics , 1987 .

[62]  J. Crow The genetic basis of evolutionary change , 1975 .

[63]  P. T. Spieth Gene flow and genetic differentiation. , 1974, Genetics.

[64]  T. Ohta,et al.  Theoretical aspects of population genetics. , 1972, Monographs in population biology.

[65]  Klaudia Frankfurter,et al.  The Coevolutionary Process , 2016 .

[66]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[67]  E. Archie,et al.  Population genetic structure and history of a generalist parasite infecting multiple sympatric host species. , 2011, International journal for parasitology.

[68]  S. Nadler,et al.  Critical Comment: What We Don’t Recognize Can Hurt Us: A Plea for Awareness About Cryptic Species , 2010 .

[69]  R. Poulin,et al.  Host specificity under molecular and experimental scrutiny. , 2008, Trends in parasitology.

[70]  Stéphane Dray,et al.  The ade4 Package-II: Two-table and K-table Methods , 2007 .

[71]  Jean Thioulouse,et al.  The ade4 package - I : One-table methods , 2004 .

[72]  R. Page,et al.  The ecological basis of coevolutionary history , 2003 .

[73]  J. Neigel,et al.  Intraspecific Phylogeography: The Mitochondrial DNA Bridge Between Population Genetics and Systematics , 1987 .

[74]  E. Mayr Systematics and the Origin of Species , 1942 .

[75]  R. Lewontin,et al.  The Genetic Basis of Evolutionary Change , 2022 .