Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy.
暂无分享,去创建一个
Luca Mollica | Martin Blackledge | Valéry Ozenne | Robert Schneider | Mingxi Yao | Jie-rong Huang | Malene Ringkjøbing Jensen | Loïc Salmon | M. Blackledge | M. R. Jensen | L. Mollica | G. Communie | R. Schneider | Jie-rong Huang | Mingxi Yao | Loïc Salmon | Guillaume Communie | V. Ozenne | Guillaume Communie
[1] C. Dobson,et al. Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques. , 1999, Biochemistry.
[2] G. Marius Clore,et al. Visualization of transient encounter complexes in protein–protein association , 2006, Nature.
[3] Sonia Longhi,et al. Intrinsic disorder in measles virus nucleocapsids , 2011, Proceedings of the National Academy of Sciences.
[4] G. Clore,et al. Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes. , 2009, Chemical reviews.
[5] Oliver F. Lange,et al. Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution , 2008, Science.
[6] Sebastian Doniach,et al. Small-angle X-ray scattering from RNA, proteins, and protein complexes. , 2007, Annual review of biophysics and biomolecular structure.
[7] V. Uversky. Natively unfolded proteins: A point where biology waits for physics , 2002, Protein science : a publication of the Protein Society.
[8] Ronald M Levy,et al. Structural reorganization of alpha-synuclein at low pH observed by NMR and REMD simulations. , 2009, Journal of molecular biology.
[9] Abhishek K. Jha,et al. Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library. , 2005, Biochemistry.
[10] Martin Blackledge,et al. Defining conformational ensembles of intrinsically disordered and partially folded proteins directly from chemical shifts. , 2010, Journal of the American Chemical Society.
[11] Ad Bax,et al. Prediction of Sterically Induced Alignment in a Dilute Liquid Crystalline Phase: Aid to Protein Structure Determination by NMR , 2000 .
[12] C. Dobson,et al. Structural and dynamical properties of a denatured protein. Heteronuclear 3D NMR experiments and theoretical simulations of lysozyme in 8 M urea. , 1997, Biochemistry.
[13] M. Blackledge,et al. Quantitative modelfree analysis of urea binding to unfolded ubiquitin using a combination of small angle X-ray and neutron scattering. , 2009, Journal of the American Chemical Society.
[14] J M Thornton,et al. Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations. , 1996, Journal of molecular biology.
[15] H. Schwalbe,et al. Theoretical framework for NMR residual dipolar couplings in unfolded proteins , 2007, Journal of biomolecular NMR.
[16] Martin Blackledge,et al. NMR characterization of long-range order in intrinsically disordered proteins. , 2010, Journal of the American Chemical Society.
[17] Lorna J. Smith,et al. Chemical shifts in denatured proteins: Resonance assignments for denatured ubiquitin and comparisons with other denatured proteins , 2001, Journal of biomolecular NMR.
[18] D. Shortle,et al. Persistence of Native-Like Topology in a Denatured Protein in 8 M Urea , 2001, Science.
[19] Collin M. Stultz,et al. Constructing ensembles for intrinsically disordered proteins. , 2011, Current opinion in structural biology.
[20] O. Jardetzky,et al. Investigation of the neighboring residue effects on protein chemical shifts. , 2002, Journal of the American Chemical Society.
[21] Arto Annila,et al. On the origin of residual dipolar couplings from denatured proteins. , 2003, Journal of the American Chemical Society.
[22] A. Fersht,et al. Structure of tumor suppressor p53 and its intrinsically disordered N-terminal transactivation domain , 2008, Proceedings of the National Academy of Sciences.
[23] Debabani Ganguly,et al. Structural interpretation of paramagnetic relaxation enhancement-derived distances for disordered protein states. , 2009, Journal of molecular biology.
[24] Benjamin A. Shoemaker,et al. Speeding molecular recognition by using the folding funnel: the fly-casting mechanism. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[25] Ke Ruan,et al. NMR residual dipolar couplings as probes of biomolecular dynamics. , 2006, Chemical reviews.
[26] Robin S. Dothager,et al. Random-coil behavior and the dimensions of chemically unfolded proteins. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[27] G. Marius Clore,et al. Detecting transient intermediates in macromolecular binding by paramagnetic NMR , 2006, Nature.
[28] S. Grzesiek,et al. Direct observation of dipolar couplings and hydrogen bonds across a beta-hairpin in 8 M urea. , 2007, Journal of the American Chemical Society.
[29] Dmitri I Svergun,et al. Domain conformation of tau protein studied by solution small-angle X-ray scattering. , 2008, Biochemistry.
[30] M. Blackledge. Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings , 2005 .
[31] P E Wright,et al. Sequence-dependent correction of random coil NMR chemical shifts. , 2001, Journal of the American Chemical Society.
[32] Pau Bernadó,et al. Structural disorder within sendai virus nucleoprotein and phosphoprotein: insight into the structural basis of molecular recognition. , 2010, Protein and peptide letters.
[33] J. Marsh,et al. Structure and disorder in an unfolded state under nondenaturing conditions from ensemble models consistent with a large number of experimental restraints. , 2009, Journal of molecular biology.
[34] G. Wagner,et al. Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear overhauser effect data. , 2000, Biochemistry.
[35] Ian W. Davis,et al. Structure validation by Cα geometry: ϕ,ψ and Cβ deviation , 2003, Proteins.
[36] G. Bouvignies,et al. Exploring multiple timescale motions in protein GB3 using accelerated molecular dynamics and NMR spectroscopy. , 2007, Journal of the American Chemical Society.
[37] G. Rose,et al. Loops in globular proteins: a novel category of secondary structure. , 1986, Science.
[38] J. Rullmann,et al. “Ensemble” iterative relaxation matrix approach: A new NMR refinement protocol applied to the solution structure of crambin , 1993, Proteins.
[39] Martin Blackledge,et al. Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings. , 2009, Journal of the American Chemical Society.
[40] Christian Griesinger,et al. Quantitative determination of the conformational properties of partially folded and intrinsically disordered proteins using NMR dipolar couplings. , 2009, Structure.
[41] Peter Tompa,et al. Unstructural biology coming of age. , 2011, Current opinion in structural biology.
[42] Kaare Teilum,et al. Conformational selection in the molten globule state of the nuclear coactivator binding domain of CBP , 2010, Proceedings of the National Academy of Sciences.
[43] S. Radford,et al. Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[44] G. Clore,et al. Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement. , 2007, Current opinion in structural biology.
[45] Abhishek K. Jha,et al. Statistical coil model of the unfolded state: resolving the reconciliation problem. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[46] Christian Griesinger,et al. Structural Polymorphism of 441-Residue Tau at Single Residue Resolution , 2009, PLoS biology.
[47] H. Dyson,et al. Intrinsically unstructured proteins and their functions , 2005, Nature Reviews Molecular Cell Biology.
[48] H. Dyson,et al. Mechanism of coupled folding and binding of an intrinsically disordered protein , 2007, Nature.
[49] M. Blackledge,et al. Structural characterization of flexible proteins using small-angle X-ray scattering. , 2007, Journal of the American Chemical Society.
[50] K. Plaxco,et al. Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins. , 2002, Advances in protein chemistry.
[51] M. Blackledge,et al. Defining long-range order and local disorder in native alpha-synuclein using residual dipolar couplings. , 2005, Journal of the American Chemical Society.
[52] R. Brüschweiler,et al. Backbone dynamics and structural characterization of the partially folded A state of ubiquitin by 1H, 13C, and 15N nuclear magnetic resonance spectroscopy. , 1997, Biochemistry.
[53] Pau Bernadó,et al. A self-consistent description of the conformational behavior of chemically denatured proteins from NMR and small angle scattering. , 2009, Biophysical journal.
[54] Rafael Brüschweiler,et al. Protein conformational flexibility from structure-free analysis of NMR dipolar couplings: quantitative and absolute determination of backbone motion in ubiquitin. , 2009, Angewandte Chemie.
[55] Kresten Lindorff-Larsen,et al. Determination of an ensemble of structures representing the denatured state of the bovine acyl-coenzyme a binding protein. , 2004, Journal of the American Chemical Society.
[56] D. Eliezer,et al. Biophysical characterization of intrinsically disordered proteins. , 2009, Current opinion in structural biology.
[57] J. Forman-Kay,et al. Atomic-level characterization of disordered protein ensembles. , 2007, Current opinion in structural biology.
[58] C. Griesinger,et al. Release of long-range tertiary interactions potentiates aggregation of natively unstructured alpha-synuclein. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[59] Martin Tollinger,et al. Calculation of residual dipolar couplings from disordered state ensembles using local alignment. , 2008, Journal of the American Chemical Society.
[60] H. Dyson,et al. Coupling of folding and binding for unstructured proteins. , 2002, Current opinion in structural biology.
[61] Martin von Bergen,et al. Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation. , 2007, Journal of the American Chemical Society.
[62] H. Dyson,et al. Linking folding and binding. , 2009, Current opinion in structural biology.
[63] L. Serrano. Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation. , 1995, Journal of molecular biology.
[64] Jane R. Allison,et al. Determination of the free energy landscape of alpha-synuclein using spin label nuclear magnetic resonance measurements. , 2009, Journal of the American Chemical Society.
[65] L. Iakoucheva,et al. Intrinsic Disorder and Protein Function , 2002 .
[66] Martin Blackledge,et al. Mapping the conformational landscape of urea-denatured ubiquitin using residual dipolar couplings. , 2007, Journal of the American Chemical Society.
[67] J Meiler,et al. Model-free approach to the dynamic interpretation of residual dipolar couplings in globular proteins. , 2001, Journal of the American Chemical Society.
[68] J. Mongan,et al. Accelerated molecular dynamics: a promising and efficient simulation method for biomolecules. , 2004, The Journal of chemical physics.
[69] Collin M. Stultz,et al. Modeling Intrinsically Disordered Proteins with Bayesian Statistics , 2010, Journal of the American Chemical Society.
[70] P. Tompa. Intrinsically unstructured proteins. , 2002, Trends in biochemical sciences.
[71] H. Bohr,et al. Detection of initiation sites in protein folding of the four helix bundle ACBP by chemical shift analysis , 2007, FEBS letters.
[72] V. Uversky. Multitude of binding modes attainable by intrinsically disordered proteins: a portrait gallery of disorder-based complexes. , 2011, Chemical Society reviews.
[73] R. Brüschweiler,et al. Quantitative molecular ensemble interpretation of NMR dipolar couplings without restraints. , 2007, Journal of the American Chemical Society.
[74] A Keith Dunker,et al. Drugs for 'protein clouds': targeting intrinsically disordered transcription factors. , 2010, Current opinion in pharmacology.
[75] H. Dyson,et al. Molecular hinges in protein folding: the urea-denatured state of apomyoglobin. , 2002, Biochemistry.
[76] Lorna J. Smith,et al. Long-Range Interactions Within a Nonnative Protein , 2002, Science.
[77] D. Shortle,et al. Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures. , 1997, Journal of molecular biology.
[78] X. Salvatella,et al. Refinement of ensembles describing unstructured proteins using NMR residual dipolar couplings. , 2010, Journal of the American Chemical Society.
[79] A. Bax,et al. Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. , 1997, Science.
[80] A. Bax,et al. Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology , 2007, Journal of biomolecular NMR.
[81] D. Wishart,et al. The 13C Chemical-Shift Index: A simple method for the identification of protein secondary structure using 13C chemical-shift data , 1994, Journal of biomolecular NMR.
[82] F. Poulsen,et al. Short-range, long-range and transition state interactions in the denatured state of ACBP from residual dipolar couplings. , 2004, Journal of molecular biology.
[83] Nicholas C Fitzkee,et al. The Protein Coil Library: A structural database of nonhelix, nonstrand fragments derived from the PDB , 2005, Proteins.
[84] Jörg Gsponer,et al. Intrinsically disordered proteins: regulation and disease. , 2011, Current opinion in structural biology.
[85] H. Dyson,et al. NMR structural and dynamic characterization of the acid-unfolded state of apomyoglobin provides insights into the early events in protein folding. , 2001, Biochemistry.
[86] David S Wishart,et al. RefDB: A database of uniformly referenced protein chemical shifts , 2003, Journal of biomolecular NMR.
[87] Gerard J A Kroon,et al. Structural characterization of unfolded states of apomyoglobin using residual dipolar couplings. , 2004, Journal of molecular biology.
[88] Martin Blackledge,et al. Conformational distributions of unfolded polypeptides from novel NMR techniques. , 2008, The Journal of chemical physics.
[89] J. Mccammon,et al. Toward a Unified Representation of Protein Structural Dynamics in Solution , 2009, Journal of the American Chemical Society.
[90] Pau Bernadó,et al. A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[91] L. Kay,et al. Distribution of molecular size within an unfolded state ensemble using small-angle X-ray scattering and pulse field gradient NMR techniques. , 2002, Journal of molecular biology.
[92] J. Marsh,et al. Sensitivity of secondary structure propensities to sequence differences between α‐ and γ‐synuclein: Implications for fibrillation , 2006 .
[93] C. Dobson,et al. Formation of native and non-native interactions in ensembles of denatured ACBP molecules from paramagnetic relaxation enhancement studies. , 2005, Journal of molecular biology.
[94] Martin Blackledge,et al. Quantitative conformational analysis of partially folded proteins from residual dipolar couplings: application to the molecular recognition element of Sendai virus nucleoprotein. , 2008, Journal of the American Chemical Society.
[95] C. Dobson,et al. Chemical biology: More charges against aggregation , 2007, Nature.
[96] Alexander N. Volkov,et al. Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR , 2006, Proceedings of the National Academy of Sciences.
[97] On the interpretation of residual dipolar couplings as reporters of molecular dynamics. , 2004, Journal of the American Chemical Society.