Determination of complex type free, non‐conjugated oligosaccharide glucose unit values in tomato xylem sap for early detection of nutrient deficiency

Although knowledge on glycan biosynthesis and processing is continuously maturing, there are still a limited number of studies that examine biological functions of N‐glycan structures in plants, which remain virtually unknown. Here, the statistical correlation between nutrient (nitrogen) deficiency symptoms of crops and changes in 8‐aminopyrene‐1,3,6‐trisulfonic acid (APTS)‐labeled complex type free oligosaccharides is reported. While deficiency symptoms are predicted by multispectral images and Kjeldahl digestion, APTS‐labeled complex type free oligosaccharides are identified by their glucose unit (GU) values in tomato xylem sap, using capillary electrophoresis with laser induced fluorescence detection (CE‐LIF). Given the limited number of structures obtained from plants, archived in the literature, in the future, it is intended to create an open access database of promising indicators, namely, glycan structures that are presumably responsible for the nutrient deficiency caused stress in plants (http://glycoplants.org).

[1]  Máté Szarka Greening Capillary Electrophoresis, a promising sprout of Separation Science toward sustainability , 2020 .

[2]  Hervé Broly,et al.  Mechanistic reconstruction of glycoprotein secretion through monitoring of intracellular N-glycan processing , 2019, Science Advances.

[3]  M. Szigeti,et al.  Sample Preparation Scale-Up for Deep N-glycomic Analysis of Human Serum by Capillary Electrophoresis and CE-ESI-MS* , 2019, Molecular & Cellular Proteomics.

[4]  S. Frese,et al.  N-glycans from human milk glycoproteins are selectively released by an infant gut symbiont in vivo , 2019, Journal of Functional Foods.

[5]  M. Maeda,et al.  Plant complex type free N-glycans occur in tomato xylem sap , 2019, Bioscience, biotechnology, and biochemistry.

[6]  J. Novak,et al.  Glycosylation in health and disease , 2019, Nature Reviews Nephrology.

[7]  Lenin Ramírez-Cando,et al.  Decision support algorithm for the selection of analytical methods in organic compounds detection for future extraterrestrial exploratory missions , 2018, Electrophoresis.

[8]  D. Inzé,et al.  The Pivotal Role of Ethylene in Plant Growth , 2018, Trends in plant science.

[9]  Gabor Jarvas,et al.  Structural identification of N-linked carbohydrates using the GUcal application: A tutorial. , 2018, Journal of proteomics.

[10]  M. Maeda,et al.  Occurrence of complex type free N-glycans with a single GlcNAc residue at the reducing termini in the fresh-water plant, Egeria densa , 2017, Glycoconjugate Journal.

[11]  M. Szigeti,et al.  Rapid N-glycan release from glycoproteins using immobilized PNGase F microcolumns. , 2016, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[12]  J. Hirabayashi,et al.  Occurrence of free sialyl oligosaccharides related to N-glycans (sialyl free N-glycans) in animal sera. , 2016, Glycobiology.

[13]  Gabor Jarvas,et al.  GUcal: An integrated application for capillary electrophoresis based glycan analysis , 2015, Electrophoresis.

[14]  M. Maeda,et al.  Structural features of free N-glycans occurring in plants and functional features of de-N-glycosylation enzymes, ENGase, and PNGase: the presence of unusual plant complex type N-glycans , 2014, Front. Plant Sci..

[15]  R. Strasser Biological significance of complex N-glycans in plants and their impact on plant physiology , 2014, Front. Plant Sci..

[16]  A. Guttman,et al.  Glycan microarrays: new angles and new strategies. , 2014, The Analyst.

[17]  Jae Yong Yoo,et al.  N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa. , 2013, The Plant journal : for cell and molecular biology.

[18]  M. Maeda,et al.  Intracellular and extracellular free N-glycans produced by plant cells: occurrence of unusual plant complex-type free N-glycans in extracellular spaces. , 2010, Journal of biochemistry.

[19]  Pauline M. Rudd,et al.  GlycoBase and autoGU: tools for HPLC-based glycan analysis , 2008, Bioinform..

[20]  Sang Yeol Lee,et al.  Salt tolerance of Arabidopsis thaliana requires maturation of N-glycosylated proteins in the Golgi apparatus , 2008, Proceedings of the National Academy of Sciences.

[21]  John R. Miller,et al.  Remote Estimation of Crop Chlorophyll Content Using Spectral Indices Derived From Hyperspectral Data , 2008, IEEE Transactions on Geoscience and Remote Sensing.

[22]  R. Dwek,et al.  Glycan analysis of monoclonal antibodies secreted in deposition disorders indicates that subsets of plasma cells differentially process IgG glycans. , 2006, Arthritis and rheumatism.

[23]  C. Gachon,et al.  Pathogen-Responsive Expression of Glycosyltransferase Genes UGT73B3 and UGT73B5 Is Necessary for Resistance to Pseudomonas syringae pv tomato in Arabidopsis[W] , 2005, Plant Physiology.

[24]  P Lukacik,et al.  Complement regulation at the molecular level: the structure of decay-accelerating factor. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[25]  I. Wilson,et al.  Analysis of Asn-linked glycans from vegetable foodstuffs: widespread occurrence of Lewis a, core alpha1,3-linked fucose and xylose substitutions. , 2001, Glycobiology.

[26]  Y. Kimura,et al.  Free N-glycans already occur at an early stage of seed development. , 2000, Journal of biochemistry.

[27]  Y. Kimura,et al.  Structural Analysis of Free N-Glycans Occurring in Soybean Seedlings and Dry Seeds , 2000, Bioscience, biotechnology, and biochemistry.

[28]  R. Dwek,et al.  Sugar printing rheumatic diseases: a potential method for disease differentiation using immunoglobulin G oligosaccharides. , 1999, Arthritis and rheumatism.

[29]  A. Oda,et al.  Root-specific expression of genes for novel glycine-rich proteins cloned by use of an antiserum against xylem sap proteins of cucumber. , 1998, Plant & cell physiology.

[30]  J. A. S. Rincón,et al.  Estimación de la concentración de nitrógeno y clorofila entomate mediante un medidor portátil de clorofila , 1998 .

[31]  P. L. Kirk Kjeldahl Method for Total Nitrogen , 1950 .