Iterative feature selection method to discover predictive variables and interactions for high-dimensional transplant genomic data
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[1] Leo Breiman,et al. Classification and Regression Trees , 1984 .
[2] Edwina L. Rissland,et al. CABOT: An Adaptive Approach to Case-Based Search , 1991, IJCAI.
[3] A. Kolstø,et al. A tight cluster of five unrelated human genes on chromosome 16q22.1. , 1993, Human molecular genetics.
[4] Igor Kononenko,et al. Estimating Attributes: Analysis and Extensions of RELIEF , 1994, ECML.
[5] R. Hoover,et al. Solid cancers after bone marrow transplantation. , 1997, The New England journal of medicine.
[6] Pedro M. Domingos. Occam's Two Razors: The Sharp and the Blunt , 1998, KDD.
[7] H. Prydz,et al. Characterization of PSKH1, a novel human protein serine kinase with centrosomal, golgi, and nuclear localization. , 2000, Genomics.
[8] Michael I. Jordan,et al. Feature selection for high-dimensional genomic microarray data , 2001, ICML.
[9] J. Griffin,et al. The roles of FLT3 in hematopoiesis and leukemia. , 2002, Blood.
[10] M. Abdelhaleem. The novel helicase homologue DDX32 is down-regulated in acute lymphoblastic leukemia. , 2002, Leukemia research.
[11] H. Prydz,et al. PSKH1, a novel splice factor compartment-associated serine kinase. , 2002, Nucleic acids research.
[12] G. Tsujimoto,et al. Analysis of Highly Expressed Genes in Monocytes from Atopic Dermatitis Patients , 2003, International Archives of Allergy and Immunology.
[13] I. Weissman,et al. A role for Wnt signalling in self-renewal of haematopoietic stem cells , 2003, Nature.
[14] David A. Bell,et al. A Formalism for Relevance and Its Application in Feature Subset Selection , 2000, Machine Learning.
[15] Leo Breiman,et al. Random Forests , 2001, Machine Learning.
[16] Jerome H. Friedman,et al. On Bias, Variance, 0/1—Loss, and the Curse-of-Dimensionality , 2004, Data Mining and Knowledge Discovery.
[17] Ping Ji,et al. Translocation Products in Acute Myeloid Leukemia Activate the Wnt Signaling Pathway in Hematopoietic Cells , 2004, Molecular and Cellular Biology.
[18] Pedro M. Domingos. The Role of Occam's Razor in Knowledge Discovery , 1999, Data Mining and Knowledge Discovery.
[19] Byoung-Tak Zhang,et al. PubMiner: Machine Learning-based Text Mining for Biomedical Information Analysis , 2004 .
[20] Jason H. Moore,et al. STUDENTJAMA. The challenges of whole-genome approaches to common diseases. , 2004, JAMA.
[21] D. Kibler,et al. Instance-based learning algorithms , 2004, Machine Learning.
[22] P. Gallagher,et al. Human potassium chloride cotransporter 1 (SLC12A4) promoter is regulated by AP-2 and contains a functional downstream promoter element. , 2004, Blood.
[23] R. Galli,et al. Tie2 identifies a hematopoietic monocytes required for tumor lineage of proangiogenic vessel formation and a mesenchymal population of pericyte progenitors , 2005 .
[24] Chris H. Q. Ding,et al. Minimum Redundancy Feature Selection from Microarray Gene Expression Data , 2005, J. Bioinform. Comput. Biol..
[25] Michael Ho,et al. Expression of DHX32 in lymphoid tissues. , 2005, Experimental and molecular pathology.
[26] H. Clevers,et al. Wnt signalling in stem cells and cancer , 2005, Nature.
[27] Luigi Naldini,et al. Tie2 identifies a hematopoietic lineage of proangiogenic monocytes required for tumor vessel formation and a mesenchymal population of pericyte progenitors. , 2005, Cancer cell.
[28] M. Abdelhaleem. RNA helicases: regulators of differentiation. , 2005, Clinical biochemistry.
[29] Fuhui Long,et al. Feature selection based on mutual information criteria of max-dependency, max-relevance, and min-redundancy , 2003, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[30] David W. Aha,et al. Instance-Based Learning Algorithms , 1991, Machine Learning.
[31] David M. Reif,et al. Machine Learning for Detecting Gene-Gene Interactions , 2006, Applied bioinformatics.
[32] D. Whitcomb,et al. Human Pancreatic Digestive Enzymes , 2007, Digestive Diseases and Sciences.
[33] Achim Zeileis,et al. Bias in random forest variable importance measures: Illustrations, sources and a solution , 2007, BMC Bioinformatics.
[34] Philippe C. Besse,et al. Identification of biomarkers of human pancreatic adenocarcinomas by expression profiling and validation with gene expression analysis in endoscopic ultrasound-guided fine needle aspiration samples. , 2006, World journal of gastroenterology.
[35] Antonio Felipe,et al. Potassium channels: new targets in cancer therapy. , 2006, Cancer detection and prevention.
[36] Suk Woo Nam,et al. Mutational analysis of PTPRT phosphatase domains in common human cancers , 2007, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.
[37] Pedro Larrañaga,et al. A review of feature selection techniques in bioinformatics , 2007, Bioinform..
[38] Jason H. Moore,et al. Tuning ReliefF for Genome-Wide Genetic Analysis , 2007, EvoBIO.
[39] Alexandra G. Smith,et al. RAD51 homologous recombination repair gene haplotypes and risk of acute myeloid leukaemia. , 2007, Leukemia research.
[40] S. Yamashita,et al. Role of LCAT in HDL remodeling: investigation of LCAT deficiency states Published, JLR Papers in Press, December 20, 2006. , 2007, Journal of Lipid Research.
[41] H. Ishwaran. Variable importance in binary regression trees and forests , 2007, 0711.2434.
[42] M. Huber,et al. IRF4 is essential for IL-21-mediated induction, amplification, and stabilization of the Th17 phenotype , 2008, Proceedings of the National Academy of Sciences.
[43] Margaret J. Eppstein,et al. Very large scale ReliefF for genome-wide association analysis , 2008, 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.
[44] Hemant Ishwaran,et al. Random Survival Forests , 2008, Wiley StatsRef: Statistics Reference Online.
[45] Chunaram Choudhary,et al. Activation of Wnt signalling in acute myeloid leukemia by induction of Frizzled-4. , 2008, International journal of oncology.
[46] S. Targan,et al. MAGI2 genetic variation and inflammatory bowel disease , 2009, Inflammatory bowel diseases.
[47] H. Erickson,et al. Functional characterization of an activating TEK mutation in acute myeloid leukemia: a cellular context-dependent activating mutation , 2009, Leukemia.
[48] H. Cordell. Detecting gene–gene interactions that underlie human diseases , 2009, Nature Reviews Genetics.
[49] Elena Marchiori,et al. Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics , 2007, Lecture Notes in Computer Science.
[50] Jason H. Moore,et al. Spatially Uniform ReliefF (SURF) for computationally-efficient filtering of gene-gene interactions , 2009, BioData Mining.
[51] A. Rudensky,et al. Regulatory T-cell suppressor program co-opts transcription factor IRF4 to control TH2 responses , 2009, Nature.
[52] M. Mengel,et al. Immunoproteasome beta subunit 10 is increased in chronic antibody-mediated rejection. , 2010, Kidney international.
[53] Wolfram Goessling,et al. The Wnt/β-Catenin Pathway Is Required for the Development of Leukemia Stem Cells in AML , 2010, Science.
[54] D. Cooper,et al. Evidence for microRNA involvement in exercise-associated neutrophil gene expression changes. , 2010, Journal of applied physiology.
[55] T. Hansen,et al. Identification of KCNJ15 as a susceptibility gene in Asian patients with type 2 diabetes mellitus. , 2010, American journal of human genetics.
[56] K. Wagner,et al. Phosphoinositide phospholipase Cbeta1 (PI-PLCbeta1) gene in myelodysplastic syndromes and cytogenetically normal acute myeloid leukemia: not a deletion, but increased PI-PLCbeta1 expression is an independent prognostic factor. , 2010, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[57] Thomas Lengauer,et al. Permutation importance: a corrected feature importance measure , 2010, Bioinform..
[58] L. Zhao,et al. Defining genetic risk for graft-versus-host disease and mortality following allogeneic hematopoietic stem cell transplantation , 2010, Current opinion in hematology.
[59] Jason H. Moore,et al. The Informative Extremes: Using Both Nearest and Farthest Individuals Can Improve Relief Algorithms in the Domain of Human Genetics , 2010, EvoBIO.
[60] Shyam Visweswaran,et al. Application of a spatially-weighted Relief algorithm for ranking genetic predictors of disease , 2012, BioData Mining.
[61] C. Lacroix,et al. The Ubiquitin-Specific Protease USP34 Regulates Axin Stability and Wnt/β-Catenin Signaling , 2011, Molecular and Cellular Biology.
[62] Wei-Yin Loh,et al. Classification and regression trees , 2011, WIREs Data Mining Knowl. Discov..
[63] Y. Kodera,et al. Clinical Significance of Regulatory T-Cell–Related Gene Expression in Peripheral Blood After Renal Transplantation , 2011, Transplantation.
[64] W. Shi,et al. The transcription factors Blimp-1 and IRF4 jointly control the differentiation and function of effector regulatory T cells , 2011, Nature Immunology.
[65] W. Foulkes,et al. miRNA Processing and Human Cancer: DICER1 Cuts the Mustard , 2011, Science Translational Medicine.
[66] Kristin K. Nicodemus,et al. Letter to the Editor: On the stability and ranking of predictors from random forest variable importance measures , 2011, Briefings Bioinform..
[67] Carolin Strobl,et al. Random forest Gini importance favours SNPs with large minor allele frequency: impact, sources and recommendations , 2012, Briefings Bioinform..
[68] A. Hoischen,et al. Amplified segment in the ‘Down Syndrome critical region’ on HSA21 shared between Down syndrome and euploid AML‐M0 excludes RUNX1, ERG and ETS2 , 2012, British journal of haematology.
[69] K. Tokunaga,et al. Inhibition of Glucose-Stimulated Insulin Secretion by KCNJ15, a Newly Identified Susceptibility Gene for Type 2 Diabetes , 2012, Diabetes.
[70] S. Gudjonsson,et al. IRF4 transcription-factor-dependent CD103(+)CD11b(+) dendritic cells drive mucosal T helper 17 cell differentiation. , 2013, Immunity.
[71] N. McGovern,et al. IRF4 Transcription Factor-Dependent CD11b+ Dendritic Cells in Human and Mouse Control Mucosal IL-17 Cytokine Responses , 2013, Immunity.
[72] W. Birchmeier,et al. Wnt signaling in stem and cancer stem cells. , 2013, Current opinion in cell biology.
[73] P. Bolufer,et al. Adverse prognostic value of MYBL2 overexpression and association with microRNA-30 family in acute myeloid leukemia patients. , 2013, Leukemia research.
[74] Jason H. Moore,et al. Multiple Threshold Spatially Uniform ReliefF for the Genetic Analysis of Complex Human Diseases , 2013, EvoBIO.
[75] Benjamin J. Raphael,et al. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. , 2013, The New England journal of medicine.
[76] Ching Lee Koo,et al. A Review for Detecting Gene-Gene Interactions Using Machine Learning Methods in Genetic Epidemiology , 2013, BioMed research international.
[77] N. Divecha,et al. Phospholipase c beta 1 (PLCb1) in acute myeloid leukemia (AML): a novel potential therapeutic target , 2014 .
[78] Verónica Bolón-Canedo,et al. A review of microarray datasets and applied feature selection methods , 2014, Inf. Sci..
[79] G. Zhen,et al. RAD51 Gene 135G/C polymorphism and the risk of four types of common cancers: a meta-analysis , 2014, Diagnostic Pathology.
[80] K. Döhner,et al. Tracing the development of acute myeloid leukemia in CBL syndrome. , 2014, Blood.
[81] Hiroaki Kimura,et al. New Insights into the Function of the Immunoproteasome in Immune and Nonimmune Cells , 2015, Journal of immunology research.
[82] M. Lutz,et al. In vitro-generated MDSCs prevent murine GVHD by inducing type 2 T cells without disabling antitumor cytotoxicity. , 2015, Blood.
[83] M. Bryś,et al. Polymorphisms of Homologous Recombination RAD51, RAD51B, XRCC2, and XRCC3 Genes and the Risk of Prostate Cancer , 2015, Analytical cellular pathology.
[84] Effie W Petersdorf,et al. High HLA-DP Expression and Graft-versus-Host Disease. , 2015, The New England journal of medicine.
[85] Xifeng Qian,et al. [Relationship between RAD51-G135C and XRCC3-C241T Single Nucleotide Polymorphisms and Onset of Acute Myeloid Leukemia]. , 2015, Zhongguo shi yan xue ye xue za zhi.
[86] M. Norkin,et al. Indications for allo- and auto-SCT for haematological diseases, solid tumours and immune disorders: current practice in Europe, 2015 , 2015, Bone Marrow Transplantation.
[87] Penggao Dai,et al. Expression Profile Analysis of Zinc Transporters (ZIP4, ZIP9, ZIP11, ZnT9) in Gliomas and their Correlation with IDH1 Mutation Status. , 2015, Asian Pacific journal of cancer prevention : APJCP.
[88] Jae-Bong Lee,et al. Association of the Single Nucleotide Polymorphisms in RUNX1, DYRK1A, and KCNJ15 with Blood Related Traits in Pigs , 2016, Asian-Australasian journal of animal sciences.
[89] J. Falkenburg,et al. Autosomal Minor Histocompatibility Antigens: How Genetic Variants Create Diversity in Immune Targets , 2016, Front. Immunol..
[90] C. Csizmar,et al. The role of the proteasome in AML , 2016, Blood Cancer Journal.
[91] J. Dopazo,et al. The Mutational Landscape of Acute Promyelocytic Leukemia Reveals an Interacting Network of Co-Occurrences and Recurrent Mutations , 2016, PloS one.
[92] F. Korner‐Nievergelt,et al. The earth is flat (p > 0.05): significance thresholds and the crisis of unreplicable research , 2017, PeerJ.
[93] Andreas Ziegler,et al. ranger: A Fast Implementation of Random Forests for High Dimensional Data in C++ and R , 2015, 1508.04409.
[94] C. Schmitt,et al. Initiation of acute graft-versus-host disease by angiogenesis. , 2016, Blood.
[95] Jingqing Yang,et al. Zinc transporters and dysregulated channels in cancers. , 2017, Frontiers in bioscience.
[96] O. Delattre,et al. MYBL2 (B-Myb): a central regulator of cell proliferation, cell survival and differentiation involved in tumorigenesis , 2017, Cell Death & Disease.
[97] V. Paunic,et al. Investigating the Association of Genetic Admixture and Donor/Recipient Genetic Disparity with Transplant Outcomes. , 2017, Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation.
[98] Sarah C. Nelson,et al. Genome-wide minor histocompatibility matching as related to the risk of graft-versus-host disease. , 2017, Blood.
[99] Stefan Wellek,et al. A critical evaluation of the current “p‐value controversy” , 2017, Biometrical journal. Biometrische Zeitschrift.
[100] L. Murphy,et al. Recurrent copy number alterations in young women with breast cancer , 2018, Oncotarget.
[101] J. McCubrey,et al. Nuclear phospholipase C isoenzyme imbalance leads to pathologies in brain, hematologic, neuromuscular, and fertility disorders[S] , 2018, Journal of Lipid Research.
[102] I. Moret,et al. Different Genetic Expression Profiles of Oxidative Stress and Apoptosis-Related Genes in Crohn’s Disease , 2018, Digestion.
[103] Anne-Laure Boulesteix,et al. A computationally fast variable importance test for random forests for high-dimensional data , 2015, Adv. Data Anal. Classif..
[104] Stefano Nembrini,et al. The revival of the Gini importance? , 2018, Bioinform..
[105] Hemant Ishwaran,et al. A prediction-based alternative to P values in regression models. , 2017, The Journal of thoracic and cardiovascular surgery.
[106] I. Maillard,et al. New Insights into Graft-Versus-Host Disease and Graft Rejection. , 2018, Annual review of pathology.
[107] M. Labopin,et al. Evaluation of Second Solid Cancers After Hematopoietic Stem Cell Transplantation in European Patients , 2019, JAMA oncology.
[108] Randal S. Olson,et al. Benchmarking Relief-Based Feature Selection Methods , 2017, J. Biomed. Informatics.
[109] Randal S. Olson,et al. Relief-Based Feature Selection: Introduction and Review , 2017, J. Biomed. Informatics.
[110] Navigating through Mutations in Acute Myeloid Leukemia. What Do We Know and What Do We Do with It? , 2018, Erciyes Tıp Dergisi/Erciyes Medical Journal.
[111] D. Weatherall,et al. Sickle cell disease , 2018, Nature Reviews Disease Primers.
[112] Hemant Ishwaran,et al. Standard errors and confidence intervals for variable importance in random forest regression, classification, and survival , 2018, Statistics in medicine.
[113] Alex A Freitas,et al. Investigating the role of Simpson's paradox in the analysis of top-ranked features in high-dimensional bioinformatics datasets , 2020, Briefings Bioinform..