Fusion of ULS Group Constrained High- and Low-Order Sparse Functional Connectivity Networks for MCI Classification

Functional connectivity networks, derived from resting-state fMRI data, have been found as effective biomarkers for identifying mild cognitive impairment (MCI) from healthy elderly. However, the traditional functional connectivity network is essentially a low-order network with the assumption that the brain activity is static over the entire scanning period, ignoring temporal variations among the correlations derived from brain region pairs. To overcome this limitation, we proposed a new type of sparse functional connectivity network to precisely describe the relationship of temporal correlations among brain regions. Specifically, instead of using the simple pairwise Pearson’s correlation coefficient as connectivity, we first estimate the temporal low-order functional connectivity for each region pair based on an ULS Group constrained-UOLS regression algorithm, where a combination of ultra-least squares (ULS) criterion with a Group constrained topology structure detection algorithm is applied to detect the topology of functional connectivity networks, aided by an Ultra-Orthogonal Least Squares (UOLS) algorithm to estimate connectivity strength. Compared to the classical least squares criterion which only measures the discrepancy between the observed signals and the model prediction function, the ULS criterion takes into consideration the discrepancy between the weak derivatives of the observed signals and the model prediction function and thus avoids the overfitting problem. By using a similar approach, we then estimate the high-order functional connectivity from the low-order connectivity to characterize signal flows among the brain regions. We finally fuse the low-order and the high-order networks using two decision trees for MCI classification. Experimental results demonstrate the effectiveness of the proposed method on MCI classification.

[1]  J. Ponsford,et al.  Key Hospital Anxiety and Depression Scale (HADS) items associated with DSM-IV depressive and anxiety disorder 12-months post traumatic brain injury. , 2018, Journal of affective disorders.

[2]  D. Price,et al.  Loss of the Presynaptic Vesicle Protein Synaptophysin in Hippocampus Correlates with Cognitive Decline in Alzheimer Disease , 1997, Journal of neuropathology and experimental neurology.

[3]  R. Sandanalakshmi,et al.  Selected Saliency Based Analysis for the Diagnosis of Alzheimer's Disease Using Structural Magnetic Resonance Image , 2016 .

[4]  Julia M Stephen,et al.  MEG biomarker of Alzheimer's disease: Absence of a prefrontal generator during auditory sensory gating , 2017, Human Brain Mapping.

[5]  Yang Li,et al.  Learning Brain Connectivity Sub-networks by Group- Constrained Sparse Inverse Covariance Estimation for Alzheimer's Disease Classification , 2018, Front. Neuroinform..

[6]  G. Zubicaray,et al.  Diffusion indices on magnetic resonance imaging and neuropsychological performance in amnestic mild cognitive impairment , 2006, Journal of Neurology, Neurosurgery & Psychiatry.

[7]  Muhammad Arif,et al.  Decision Trees Based Classification of Cardiotocograms Using Bagging Approach , 2015, 2015 13th International Conference on Frontiers of Information Technology (FIT).

[8]  Pei-Ning Wang,et al.  Diagnostic accuracy of Instrumental Activities of Daily Living for dementia in community-dwelling older adults , 2018, Age and ageing.

[9]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[10]  G. Fagiolo Clustering in complex directed networks. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[11]  Kaustubh Supekar,et al.  Estimation of functional connectivity in fMRI data using stability selection-based sparse partial correlation with elastic net penalty , 2012, NeuroImage.

[12]  Stefan Rotter,et al.  Sparse Estimation of Resting-State Effective Connectivity From fMRI Cross-Spectra , 2018, Front. Neurosci..

[13]  DE CS.TU-BERLIN.,et al.  Sparse Causal Discovery in Multivariate Time Series , 2010 .

[14]  Li Yao,et al.  Impairment and compensation coexist in amnestic MCI default mode network , 2010, NeuroImage.

[15]  M. Akhoondzadeh,et al.  Decision Tree, Bagging and Random Forest methods detect TEC seismo-ionospheric anomalies around the time of the Chile, (Mw = 8.8) earthquake of 27 February 2010 , 2016 .

[16]  Abbas Babajani-Feremi,et al.  Identifying patients with Alzheimer’s disease using resting-state fMRI and graph theory , 2015, Clinical Neurophysiology.

[17]  M. Gilardi,et al.  Magnetic resonance imaging biomarkers for the early diagnosis of Alzheimer's disease: a machine learning approach , 2015, Front. Neurosci..

[18]  Edward T. Bullmore,et al.  SYSTEMS NEUROSCIENCE Original Research Article , 2009 .

[19]  John Shawe-Taylor,et al.  Sparse Network-Based Models for Patient Classification Using fMRI , 2013, PRNI.

[20]  R. Petersen Mild cognitive impairment as a diagnostic entity , 2004, Journal of internal medicine.

[21]  Seong-Whan Lee,et al.  Hierarchical feature representation and multimodal fusion with deep learning for AD/MCI diagnosis , 2014, NeuroImage.

[22]  Daoqiang Zhang,et al.  Group-constrained sparse fMRI connectivity modeling for mild cognitive impairment identification , 2013, Brain Structure and Function.

[23]  Moo K. Chung,et al.  Sparse Brain Network Recovery Under Compressed Sensing , 2011, IEEE Transactions on Medical Imaging.

[24]  Divya Jain,et al.  Feature selection and classification systems for chronic disease prediction: A review , 2018, Egyptian Informatics Journal.

[25]  Yasheng Chen,et al.  Diffusion tensor imaging based network analysis detects alterations of neuroconnectivity in patients with clinically early relapsing‐remitting multiple sclerosis , 2013, Human brain mapping.

[26]  Markus Donix,et al.  Precuneus Structure Changes in Amnestic Mild Cognitive Impairment , 2017, American journal of Alzheimer's disease and other dementias.

[27]  B. Aronow,et al.  Eotaxin-3 and a uniquely conserved gene-expression profile in eosinophilic esophagitis. , 2006, The Journal of clinical investigation.

[28]  Jie Huang,et al.  Automatic Epileptic Seizure Detection in EEG Signals Using Multi-Domain Feature Extraction and Nonlinear Analysis , 2017, Entropy.

[29]  Alzheimer’s Association 2015 Alzheimer's disease facts and figures , 2015, Alzheimer's & Dementia.

[30]  John Shawe-Taylor,et al.  Sparse network-based models for patient classification using fMRI , 2013, NeuroImage.

[31]  Stephen A. Billings,et al.  Ultra-Orthogonal Forward Regression Algorithms for the Identification of Non-Linear Dynamic Systems , 2016, Neurocomputing.

[32]  Dinggang Shen,et al.  Sparse Multivariate Autoregressive Modeling for Mild Cognitive Impairment Classification , 2014, Neuroinformatics.

[33]  Dimitri Van De Ville,et al.  Principal components of functional connectivity: A new approach to study dynamic brain connectivity during rest , 2013, NeuroImage.

[34]  Ke Li,et al.  Epileptic Seizure Classification of EEGs Using Time–Frequency Analysis Based Multiscale Radial Basis Functions , 2018, IEEE Journal of Biomedical and Health Informatics.

[35]  M. Greicius Resting-state functional connectivity in neuropsychiatric disorders , 2008, Current opinion in neurology.

[36]  Eswar Damaraju,et al.  Tracking whole-brain connectivity dynamics in the resting state. , 2014, Cerebral cortex.

[37]  K. Das,et al.  Evaluation of Alzheimer’s disease progression based on clinical dementia rating scale with missing responses and covariates , 2018, Journal of biopharmaceutical statistics.

[38]  I. Lombardo,et al.  The efficacy of RVT-101, a 5-ht6 receptor antagonist, as an adjunct to donepezil in adults with mild-to-moderate Alzheimer’s disease: Completer analysis of a phase 2b study , 2015, Alzheimer's & Dementia.

[39]  Athanasios V. Vasilakos,et al.  Small-world human brain networks: Perspectives and challenges , 2017, Neuroscience & Biobehavioral Reviews.

[40]  Jing Li,et al.  Learning brain connectivity of Alzheimer's disease by sparse inverse covariance estimation , 2010, NeuroImage.

[41]  G. Busatto,et al.  Voxel-based morphometry in Alzheimers disease and mild cognitive impairment: Systematic review of studies addressing the frontal lobe , 2016, Dementia & neuropsychologia.

[42]  Kathryn Ziegler-Graham,et al.  Worldwide variation in the doubling time of Alzheimer's disease incidence rates , 2008, Alzheimer's & Dementia.

[43]  H. Matsuda Voxel-based Morphometry of Brain MRI in Normal Aging and Alzheimer's Disease. , 2013, Aging and disease.

[44]  Andreas A Ioannides,et al.  Dynamic functional connectivity , 2007, Current Opinion in Neurobiology.

[45]  G. Tremont,et al.  Comparing the Mini-Mental State Examination and the modified Mini-Mental State Examination in the detection of mild cognitive impairment in older adults , 2018, International Psychogeriatrics.

[46]  J. Trojanowski,et al.  Prediction of MCI to AD conversion, via MRI, CSF biomarkers, and pattern classification , 2011, Neurobiology of Aging.

[47]  Won Hee Lee,et al.  Quantitative evaluation of simulated functional brain networks in graph theoretical analysis , 2017, NeuroImage.

[48]  Dinggang Shen,et al.  Sparse temporally dynamic resting-state functional connectivity networks for early MCI identification , 2016, Brain Imaging and Behavior.

[49]  Xiaobo Chen,et al.  Structural max-margin discriminant analysis for feature extraction , 2014, Knowl. Based Syst..

[50]  A. Babajani-Feremi,et al.  Application of advanced machine learning methods on resting-state fMRI network for identification of mild cognitive impairment and Alzheimer’s disease , 2015, Brain Imaging and Behavior.

[51]  Gang Li,et al.  High‐order resting‐state functional connectivity network for MCI classification , 2016, Human brain mapping.

[52]  L. Yao,et al.  Prediction of Progressive Mild Cognitive Impairment by Multi-Modal Neuroimaging Biomarkers. , 2016, Journal of Alzheimer's disease : JAD.

[53]  Yukihiko Shirayama,et al.  Relationships between cognitive impairment on ADAS-cog and regional cerebral blood flow using SPECT in late-onset Alzheimer’s disease , 2017, Journal of Neural Transmission.

[54]  M. V. D. Heuvel,et al.  Exploring the brain network: A review on resting-state fMRI functional connectivity , 2010, European Neuropsychopharmacology.

[55]  Timothy O. Laumann,et al.  Functional Network Organization of the Human Brain , 2011, Neuron.

[56]  Abbas Babajani-Feremi,et al.  Classification of patients with MCI and AD from healthy controls using directed graph measures of resting-state fMRI , 2017, Behavioural Brain Research.

[57]  Daoqiang Zhang,et al.  Brain Connectivity Hyper-Network for MCI Classification , 2014, MICCAI.

[58]  David A. Leopold,et al.  Dynamic functional connectivity: Promise, issues, and interpretations , 2013, NeuroImage.

[59]  R. Killiany,et al.  Comparison of ApoE-related brain connectivity differences in early MCI and normal aging populations: an fMRI study , 2016, Brain Imaging and Behavior.

[60]  J. Morris,et al.  Current concepts in mild cognitive impairment. , 2001, Archives of neurology.

[61]  Leo Breiman,et al.  Bagging Predictors , 1996, Machine Learning.

[62]  Hao Yang,et al.  Novel Effective Connectivity Inference Using Ultra-Group Constrained Orthogonal Forward Regression and Elastic Multilayer Perceptron Classifier for MCI Identification , 2019, IEEE Transactions on Medical Imaging.

[63]  Xiaofeng Zhu,et al.  A novel matrix-similarity based loss function for joint regression and classification in AD diagnosis , 2014, NeuroImage.

[64]  Dinggang Shen,et al.  Inter-modality relationship constrained multi-modality multi-task feature selection for Alzheimer's Disease and mild cognitive impairment identification , 2014, NeuroImage.

[65]  Kathryn Ziegler-Graham,et al.  Forecasting the global burden of Alzheimer’s disease , 2007, Alzheimer's & Dementia.

[66]  Dinggang Shen,et al.  Discriminative Brain Effective Connectivity Analysis for Alzheimer's Disease: A Kernel Learning Approach upon Sparse Gaussian Bayesian Network , 2013, 2013 IEEE Conference on Computer Vision and Pattern Recognition.

[67]  Dinggang Shen,et al.  Multimodal hyper‐connectivity of functional networks using functionally‐weighted LASSO for MCI classification , 2019, Medical Image Anal..

[68]  N. Schuff,et al.  Magnetic resonance imaging of the entorhinal cortex and hippocampus in mild cognitive impairment and Alzheimer's disease , 2001, Journal of neurology, neurosurgery, and psychiatry.

[69]  R. Gur,et al.  Unaffected Family Members and Schizophrenia Patients Share Brain Structure Patterns: A High-Dimensional Pattern Classification Study , 2008, Biological Psychiatry.

[70]  Yu Cao,et al.  ReliefF-Based EEG Sensor Selection Methods for Emotion Recognition , 2016, Sensors.

[71]  R. Sweet,et al.  Loss of precuneus dendritic spines immunopositive for spinophilin is related to cognitive impairment in early Alzheimer's disease , 2017, Neurobiology of Aging.

[72]  Mark P. MacEachern,et al.  Olfactory identification testing as a predictor of the development of Alzheimer's dementia: A systematic review , 2012, The Laryngoscope.

[73]  Juan P. Amezquita-Sanchez,et al.  A new methodology for automated diagnosis of mild cognitive impairment (MCI) using magnetoencephalography (MEG) , 2016, Behavioural Brain Research.

[74]  Meiling Li,et al.  Dynamic functional network connectivity in idiopathic generalized epilepsy with generalized tonic–clonic seizure , 2017, Human brain mapping.

[75]  Kun Hu,et al.  Multi-scale features extraction from baseline structure MRI for MCI patient classification and AD early diagnosis , 2016, Neurocomputing.

[76]  Dinggang Shen,et al.  Extraction of dynamic functional connectivity from brain grey matter and white matter for MCI classification , 2017, Human brain mapping.

[77]  Daniel L. Rubin,et al.  Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease , 2008, PLoS Comput. Biol..

[78]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[79]  Dinggang Shen,et al.  Reveal Consistent Spatial-Temporal Patterns from Dynamic Functional Connectivity for Autism Spectrum Disorder Identification , 2016, MICCAI.

[80]  Ke Li,et al.  Epileptic seizure detection in EEG signals using sparse multiscale radial basis function networks and the Fisher vector approach , 2019, Knowl. Based Syst..

[81]  Tingwen Huang,et al.  Time-Varying System Identification Using an Ultra-Orthogonal Forward Regression and Multiwavelet Basis Functions With Applications to EEG , 2018, IEEE Transactions on Neural Networks and Learning Systems.

[82]  Gábor Péter,et al.  Bandoniozyma gen. nov., a Genus of Fermentative and Non-Fermentative Tremellaceous Yeast Species , 2012, PloS one.

[83]  R. Petersen,et al.  Mild cognitive impairment , 2006, The Lancet.

[84]  Xiaoyu Sun,et al.  Olfactory cortex degeneration in Alzheimer's disease and mild cognitive impairment. , 2015, Journal of Alzheimer's disease : JAD.

[85]  Junjie Wu,et al.  Interactions of the Salience Network and Its Subsystems with the Default-Mode and the Central-Executive Networks in Normal Aging and Mild Cognitive Impairment , 2017, Brain Connect..

[86]  Olaf Sporns,et al.  Complex network measures of brain connectivity: Uses and interpretations , 2010, NeuroImage.

[87]  O. Sporns,et al.  Complex brain networks: graph theoretical analysis of structural and functional systems , 2009, Nature Reviews Neuroscience.

[88]  Dinggang Shen,et al.  Multi-Label Nonlinear Matrix Completion With Transductive Multi-Task Feature Selection for Joint MGMT and IDH1 Status Prediction of Patient With High-Grade Gliomas , 2018, IEEE Transactions on Medical Imaging.

[89]  Michael Hornberger,et al.  Factors underlying cognitive decline in old age and Alzheimer’s disease: the role of the hippocampus , 2017, Reviews in the neurosciences.

[90]  Chee Kyun Ng,et al.  Mild cognitive impairment and its management in older people , 2015, Clinical interventions in aging.

[91]  S. J. James,et al.  Comparison of Treatment for Metabolic Disorders Associated with Autism:Reanalysis of Three Clinical Trials , 2018, Front. Neurosci..

[92]  J. Weuve,et al.  2016 Alzheimer's disease facts and figures , 2016 .

[93]  Dinggang Shen,et al.  Resting-State Multi-Spectrum Functional Connectivity Networks for Identification of MCI Patients , 2012, PloS one.

[94]  Daoqiang Zhang,et al.  Hyper-connectivity of functional networks for brain disease diagnosis , 2016, Medical Image Anal..

[95]  Leo Breiman,et al.  Bagging Predictors , 1996, Machine Learning.

[96]  Daoqiang Zhang,et al.  Identification of MCI individuals using structural and functional connectivity networks , 2012, NeuroImage.

[97]  Yang Li,et al.  Epileptic Seizure Detection Based on Time-Frequency Images of EEG Signals Using Gaussian Mixture Model and Gray Level Co-Occurrence Matrix Features , 2018, Int. J. Neural Syst..