Evaluation of the financial and technical impacts of changing commercial-scale pharmaceutical manufacturing processes.

Growing pressures in the pharmaceutical industry are driving the need to optimise processes used for the manufacture of drugs at commercial-scale, in order to improve cost of goods, product throughput and production times. Evaluating the impacts of process optimisation upon these metrics presents a challenge due to complexities and trade-offs that are often encountered when developing a typical bioprocess. Such factors have resulted in a range of novel simulation- and experimental- based techniques being developed which enable rapid, accurate and cost effective assessment of manufacturing options for commercial-scale production. This thesis proposes a combination of modelling and experimental methods for evaluating the business- and process-related impacts of implementing changes to pre-existing commercial-scale pharmaceutical manufacturing processes. The approaches are illustrated through an industrial case study, focusing upon a process operated by Protherics U.K. Limited for the manufacture of the FDA-approved rattlesnake anti-venom CroFab (Crotalidae Polyvalent Immune Fab (Ovine)). The novel methods developed and illustrated in this thesis include: Investigating the effects of process changes upon calculated yields and processing times within the production framework for a pre-existing FDA-approved bio-manufacturing process Evaluating the impacts of both developing and implementing process changes, combining output metrics into a single value to simplify the assessment Developing a multi-layered simulation methodology for the rapid and efficient evaluation of bio- manufacturing process options Applying advanced sensitivity analysis techniques to identify the most critical factors that influence product yield and throughput Evaluating a novel synthetic Protein A matrix for the recovery and purification of polyclonal antibodies from hyperimmunised ovine serum Developing decision-support software to aid the design of chromatography steps for antibody purification at industrial scale Demonstrating the utility of such models by application to data and constraints derived from a full-scale industrial facility.

[1]  Anthony R Newcombe,et al.  Antibody production: polyclonal-derived biotherapeutics. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[2]  Anthony N. Godwin,et al.  Enhancing confidence in discrete event simulations , 2001 .

[3]  Nesredin Mussa,et al.  Process analytics for purification of monoclonal antibodies. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[4]  Jane E. Klobas,et al.  The role of spreadsheet knowledge in user-developed application success , 2005, Decis. Support Syst..

[5]  Richard Francis,et al.  Evaluation of a biosensor assay to quantify polyclonal IgG in ovine serum used for the production of biotherapeutic antibody fragments , 2006 .

[6]  Suzanne S Farid,et al.  A computer‐aided approach to compare the production economics of fed‐batch and perfusion culture under uncertainty , 2006, Biotechnology and bioengineering.

[7]  Jürgen Drews,et al.  Pharmaceutical innovation between scientific opportunities and economic constraints , 1997 .

[8]  B Allen,et al.  Design of a prototype miniature bioreactor for high throughput automated bioprocessing , 2003 .

[9]  Rongfeng Li,et al.  Rational strain improvement for enhanced clavulanic acid production by genetic engineering of the glycolytic pathway in Streptomyces clavuligerus. , 2006, Metabolic engineering.

[10]  R L Fahrner,et al.  Expanded bed protein A affinity chromatography of a recombinant humanized monoclonal antibody: process development, operation, and comparison with a packed bed method. , 1999, Journal of biotechnology.

[11]  Suzanne S Farid,et al.  Process economics of industrial monoclonal antibody manufacture. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[12]  J More,et al.  Laboratory scaledown of protein purification processes involving fractional precipitation and centrifugal recovery. , 2000, Biotechnology and bioengineering.

[13]  E. Keshavarz‐Moore,et al.  Characterisation of an industrial affinity process used in the manufacturing of digoxin-specific polyclonal Fab fragments. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[14]  A. Margaritis,et al.  Empirical modeling of batch fermentation kinetics for poly(glutamic acid) production and other microbial biopolymers , 2004, Biotechnology and bioengineering.

[15]  Suzanne S. Farid,et al.  Integrated approach to improving the value potential of biopharmaceutical R&D portfolios while mitigating risk , 2006 .

[16]  J. Hancox,et al.  Venomous snakebites in the United States: management review and update. , 2002, American family physician.

[17]  Nilay Shah,et al.  Optimal integrated design of biochemical processes , 1996 .

[18]  E. Keshavarz‐Moore,et al.  Purification of antibodies using the synthetic affinity ligand absorbent MAbsorbent A2P , 2007, Nature Protocols.

[19]  C A. Shillingford,et al.  Effective decision-making: progressing compounds through clinical development. , 2001, Drug discovery today.

[20]  S. Mahler,et al.  Purification of Fab fragments from a monoclonal antibody papain digest by Gradiflow electrophoresis. , 2003, Protein expression and purification.

[21]  M E Groep,et al.  Performance modeling and simulation of biochemical process sequences with interacting unit operations. , 2000, Biotechnology and bioengineering.

[22]  E. Keshavarz‐Moore,et al.  Evaluation of a novel agarose-based synthetic ligand adsorbent for the recovery of antibodies from ovine serum. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[23]  Nilay Shah,et al.  Pharmaceutical supply chains: key issues and strategies for optimisation , 2004, Comput. Chem. Eng..

[24]  Michael P. Levens,et al.  Site-specific glycosylation of an aglycosylated human IgG1-Fc antibody protein generates neoglycoproteins with enhanced function. , 2003, Chemistry & biology.

[25]  N. J. Titchener-Hooker,et al.  Pilot-scale verification of a computer-based simulation for the centrifugal recovery of biological particles , 1996 .

[26]  B. J. Spalding Downstream Processing: Key To Slashing Production Costs 100 Fold , 1991, Bio/Technology.

[27]  Nigel J. Titchener-Hooker,et al.  Biopharmaceutical process development: Part III, A framework to assist decision making , 2001 .

[28]  John P. Barford,et al.  An unstructured kinetic model of macromolecular metabolism in batch and fed-batch cultures of hybridoma cells producing monoclonal antibody , 2000 .

[29]  Sunil Chhatre,et al.  Global Sensitivity Analysis for the determination of parameter importance in bio‐manufacturing processes , 2008, Biotechnology and applied biochemistry.

[30]  Nigel J. Titchener-Hooker,et al.  Simulation and optimisation of integrated bioprocesses: a case study , 1999 .

[31]  R. W. Hansen,et al.  The price of innovation: new estimates of drug development costs. , 2003, Journal of health economics.

[32]  Venkat Venkatasubramanian,et al.  Prognostic and diagnostic monitoring of complex systems for product lifecycle management: Challenges and opportunities , 2005, Comput. Chem. Eng..

[34]  O. A. Iribarren,et al.  The design of multiproduct batch plants with process performance models , 1994 .

[35]  O. Thomas,et al.  Evaluation of commercial chromatographic adsorbents for the direct capture of polyclonal rabbit antibodies from clarified antiserum. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[36]  Yuhong Zhou,et al.  A decisional-support tool to model the impact of regulatory compliance activities in the biomanufacturing industry , 2004, Comput. Chem. Eng..

[37]  Suzanne Farid A decision-support tool for simulating the process and business perspectives of biopharmaceutical manufacture. , 2002 .

[38]  Lazaros G. Papageorgiou,et al.  A hierarchical solution approach for multi-site capacity planning under uncertainty in the pharmaceutical industry , 2004, Comput. Chem. Eng..

[39]  L. Boyer,et al.  Recurrence phenomena after immunoglobulin therapy for snake envenomations: Part 2. Guidelines for clinical management with crotaline Fab antivenom. , 2001, Annals of emergency medicine.

[40]  Nigel J. Titchener-Hooker,et al.  Visualising bioprocesses using ‘3D-Windows of Operation’ , 2004 .

[41]  Russell W. Workman Simulation of the drug development process: a case study from the pharmaceutical industry , 2000, 2000 Winter Simulation Conference Proceedings (Cat. No.00CH37165).

[42]  Yuhong Zhou,et al.  A Software Tool to Assist Business‐Process Decision‐Making in the Biopharmaceutical Industry , 2005, Biotechnology progress.

[43]  Sunil Chhatre,et al.  The Integrated Simulation and Assessment of the Impacts of Process Change in Biotherapeutic Antibody Production , 2006, Biotechnology progress.

[44]  Anton P. J. Middelberg,et al.  A mathematical model for Escherichia coli debris size reduction during high pressure homogenisation based on grinding theory , 1997 .

[45]  Suzanne S. Farid,et al.  Retrofit Decisions within the Biopharmaceutical Industry: An EBA Case Study , 2006 .

[46]  R. Porter The hydrolysis of rabbit y-globulin and antibodies with crystalline papain. , 1959, The Biochemical journal.

[47]  J A Asenjo,et al.  Process performance models in the optimization of multiproduct protein production plants. , 2001, Biotechnology and bioengineering.

[48]  N. J. Titchener-Hooker,et al.  Use of scale-down methods to rapidly apply natural yeast homogenisation models to a recombinant strain , 1998 .

[49]  J. M. Pinto,et al.  Optimal Design of Protein Production Plants with Time and Size Factor Process Models , 2000, Biotechnology progress.

[50]  M Angela Taipa,et al.  Antibodies and Genetically Engineered Related Molecules: Production and Purification , 2004, Biotechnology progress.

[51]  A L Nortcliffe,et al.  A framework for modelling in S88 constructs for scheduling purposes. , 2001, ISA transactions.

[52]  T. Torphy,et al.  Monoclonal antibodies: boundless potential, daunting challenges , 2002 .

[53]  San Kiang,et al.  One-dimensional centrifugation model , 2003 .

[54]  Stuart R. Gallant,et al.  Immobilized metal affinity chromatography: Modeling of nonlinear multicomponent equilibrium , 1995 .

[55]  Suzanne S. Farid,et al.  A hierarchical framework for modelling biopharmaceutical manufacture to address process and business needs , 2000 .

[56]  G. Skrepnek Accounting- versus economic-based rates of return: implications for profitability measures in the pharmaceutical industry. , 2004, Clinical therapeutics.

[57]  Ferda Mavituna,et al.  Biochemical engineering and biotechnology handbook , 1982 .

[58]  A. Denizli,et al.  Affinity separation of immunoglobulin G subclasses on dye attached poly(hydroxypropyl methacrylate) beads. , 2006, International journal of biological macromolecules.

[59]  Demetri P. Petrides,et al.  BioPro designer: an advanced computing environment for modeling and design of integrated biochemical processes , 1994 .

[60]  A. Tejeda-Mansir,et al.  Modelling regeneration effects on protein A affinity chromatography , 1997 .

[61]  Sunil Chhatre,et al.  Decision‐Support Software for the Industrial‐Scale Chromatographic Purification of Antibodies , 2007, Biotechnology progress.

[62]  Alexandros Koulouris,et al.  Throughput analysis and debottlenecking of biomanufacturing facilities: A job for process simulators , 2002 .