Distinguishing enzyme structures from non-enzymes without alignments.

[1]  Sameer Velankar,et al.  E-MSD: the European Bioinformatics Institute Macromolecular Structure Database , 2003, Nucleic Acids Res..

[2]  Terri K. Attwood,et al.  The PRINTS Database: A Resource for Identification of Protein Families , 2002, Briefings Bioinform..

[3]  Eugene Krissinel,et al.  The European Bioinformatics Institute Macromolecular Structure Database (E-MSD) , 2002 .

[4]  C. A. Andersen,et al.  Prediction of human protein function from post-translational modifications and localization features. , 2002, Journal of molecular biology.

[5]  B. Rost Enzyme function less conserved than anticipated. , 2002, Journal of molecular biology.

[6]  Yael Mandel-Gutfreund,et al.  Progress in Predicting Protein Function from Structure: Unique Features of O-Glycosidases , 2002, Pacific Symposium on Biocomputing.

[7]  Michael J. E. Sternberg,et al.  Predicting the Sub-Cellular Location of Proteins from Text Using Support Vector Machines , 2001, Pacific Symposium on Biocomputing.

[8]  Amos Bairoch,et al.  The PROSITE database, its status in 2002 , 2002, Nucleic Acids Res..

[9]  Kuo-Chen Chou,et al.  Artificial Neural Network Model for Predicting Protein Subcellular Location , 2002, Comput. Chem..

[10]  J Thornton,et al.  Structural genomics takes off. , 2001, Trends in biochemical sciences.

[11]  A. Baucom,et al.  Predicting protein function from structure: unique structural features of proteases. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[12]  Vladimir N. Vapnik,et al.  The Nature of Statistical Learning Theory , 2000, Statistics for Engineering and Information Science.

[13]  Sayan Mukherjee,et al.  Feature Selection for SVMs , 2000, NIPS.

[14]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[15]  D. Eisenberg,et al.  Detecting protein function and protein-protein interactions from genome sequences. , 1999, Science.

[16]  Shmuel Pietrokovski,et al.  Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations , 1999, Bioinform..

[17]  D. Eisenberg,et al.  Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[18]  R. Overbeek,et al.  The use of gene clusters to infer functional coupling. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[19]  K. Chou,et al.  Protein subcellular location prediction. , 1999, Protein engineering.

[20]  M J Sternberg,et al.  Supersites within superfolds. Binding site similarity in the absence of homology. , 1998, Journal of molecular biology.

[21]  B. Snel,et al.  Conservation of gene order: a fingerprint of proteins that physically interact. , 1998, Trends in biochemical sciences.

[22]  P E Bourne,et al.  Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. , 1998, Protein engineering.

[23]  H. Edelsbrunner,et al.  Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design , 1998, Protein science : a publication of the Protein Society.

[24]  J. C. BurgesChristopher A Tutorial on Support Vector Machines for Pattern Recognition , 1998 .

[25]  Thorsten Joachims,et al.  Text Categorization with Support Vector Machines: Learning with Many Relevant Features , 1998, ECML.

[26]  J. Thornton,et al.  Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites , 1997, Protein science : a publication of the Protein Society.

[27]  D Eisenberg,et al.  A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence. , 1997, Journal of molecular biology.

[28]  Amos Bairoch,et al.  The PROSITE database, its status in 1997 , 1997, Nucleic Acids Res..

[29]  Gapped BLAST and PSI-BLAST: A new , 1997 .

[30]  J M Thornton,et al.  Derivation of 3D coordinate templates for searching structural databases: Application to ser‐His‐Asp catalytic triads in the serine proteinases and lipases , 1996, Protein science : a publication of the Protein Society.

[31]  P. Argos,et al.  Knowledge‐based protein secondary structure assignment , 1995, Proteins.

[32]  S. Bryant,et al.  Threading a database of protein cores , 1995, Proteins.

[33]  Vladimir Vapnik,et al.  The Nature of Statistical Learning , 1995 .

[34]  Christopher M. Bishop,et al.  Neural networks for pattern recognition , 1995 .

[35]  Ron Kohavi,et al.  Irrelevant Features and the Subset Selection Problem , 1994, ICML.

[36]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[37]  D. Lipman,et al.  Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[38]  M. L. Connolly Analytical molecular surface calculation , 1983 .

[39]  John H. Holland,et al.  Adaptation in Natural and Artificial Systems: An Introductory Analysis with Applications to Biology, Control, and Artificial Intelligence , 1992 .