Towards the development of integrated modelling systems in aquatic biogeochemistry: a Bayesian approach

Abstract Modelling constructs are designed to shed light on different facets of biogeochemical cycles, but their application involves substantial uncertainty contributed by model structure, parameters, and other inputs. The Bayesian paradigm is uniquely suitable for developing integrated environmental modelling systems, overcoming the conceptual or scale misalignment between processes of interest and supporting information, and exploiting disparate sources of information that differ with regards to the measurement error and resolution. A network of models is developed to connect the watershed processes with the dynamics of the receiving waterbody in the Hamilton Harbour (Ontario, Canada). The SPAtially Referenced Regressions On Watershed attributes ( SPARROW ) along with an intermediate complexity eutrophication model were used to reproduce the phosphorus cycling in the system, including the exchange between sediment and water column as well as the interplay between the ambient and phytoplankton intracellular pools. The novel features of the framework include ( i ) the development of a downscaling algorithm that transforms the SPARROW annual phosphorus loading estimates to daily inputs for the eutrophication model; and ( ii ) a neural network that emulates the posterior linkages between model parameters/phosphorus loading inputs and the predicted total phosphorus, chlorophyll a concentrations, and zooplankton abundance. Our integrated watershed-receiving waterbody model is independently tested against a 22-year period (1988–2009) and is subsequently used to gain insights into the ecological factors that shape the current water quality conditions in the system and may modulate its future response to the nutrient loading reductions proposed by the Hamilton Harbour Remedial Action Plan.

[1]  Simon Haykin,et al.  Neural Networks: A Comprehensive Foundation , 1998 .

[2]  Dave Higdon,et al.  Combining Field Data and Computer Simulations for Calibration and Prediction , 2005, SIAM J. Sci. Comput..

[3]  Dong-Kyun Kim,et al.  River phytoplankton prediction model by Artificial Neural Network: Model performance and selection of input variables to predict time-series phytoplankton proliferations in a regulated river system , 2006, Ecological Informatics.

[4]  George B. Arhonditsis,et al.  A Bayesian methodological framework for accommodating interannual variability of nutrient loading with the SPARROW model , 2012 .

[5]  George B. Arhonditsis,et al.  Structural changes in lake functioning induced from nutrient loading and climate variability , 2009 .

[6]  P. Reichert,et al.  Linking statistical bias description to multiobjective model calibration , 2012 .

[7]  E. Rydin,et al.  Response of the cyanobacterium Gloeotrichia echinulata to iron and boron additions - an experiment from Lake Erken , 2001 .

[8]  S. Watson,et al.  Taste and odour and cyanobacterial toxins: impairment, prediction, and management in the Great Lakes , 2008 .

[9]  Soroosh Sorooshian,et al.  Comment on: Bayesian recursive parameter estimation for hydrologic models. Authors' reply , 2003 .

[10]  Keith Beven,et al.  A manifesto for the equifinality thesis , 2006 .

[11]  Craig A. Stow,et al.  Eutrophication risk assessment using Bayesian calibration of process-based models : application to a mesotrophic lake , 2007 .

[12]  Weitao Zhang,et al.  Bayesian calibration of mechanistic aquatic biogeochemical models and benefits for environmental management , 2008 .

[13]  Andrea Castelletti,et al.  A general framework for Dynamic Emulation Modelling in environmental problems , 2012, Environ. Model. Softw..

[14]  N Oreskes,et al.  Verification, Validation, and Confirmation of Numerical Models in the Earth Sciences , 1994, Science.

[15]  George B. Arhonditsis,et al.  A Bayesian synthesis of predictions from different models for setting water quality criteria , 2012 .

[16]  M. Sivapalan,et al.  Spatiotemporal averaging of in‐stream solute removal dynamics , 2011 .

[17]  S. E. Jørgensen,et al.  Does the intermediate disturbance hypothesis comply with thermodynamics? , 1996, Hydrobiologia.

[18]  T. Mayer,et al.  Inorganic Contaminants in Suspended Solids from Hamilton Harbour , 1990 .

[19]  R. Preisendorfer,et al.  A Significance Test for Principal Components Applied to a Cyclone Climatology , 1982 .

[20]  Monika Winder,et al.  Patterns and mechanisms of phytoplankton variability in Lake Washington (USA). , 2004, Water research.

[21]  D. Hannah,et al.  Hydroecology and ecohydrology : past, present and future , 2007 .

[22]  Spatial variability in the response of lower trophic levels after carp exclusion from a freshwater marsh , 2001 .

[23]  A. O'Hagan,et al.  Bayesian calibration of computer models , 2001 .

[24]  Friedrich Recknagel,et al.  Modelling and prediction of phyto‐ and zooplankton dynamics in Lake Kasumigaura by artificial neural networks , 1998 .

[25]  E. Bruce Pitman,et al.  Computational Statistics and Data Analysis Mechanism-based Emulation of Dynamic Simulation Models: Concept and Application in Hydrology , 2022 .

[26]  George B. Arhonditsis,et al.  Eutrophication Risk Assessment in Hamilton Harbour: System Analysis and Evaluation of Nutrient Loading Scenarios , 2010 .

[27]  George B. Arhonditsis,et al.  9.10 – Integration of Bayesian Inference Techniques with Mathematical Modeling , 2011 .

[28]  M. Trosset,et al.  Bayesian recursive parameter estimation for hydrologic models , 2001 .

[29]  S. P. Bhavsar,et al.  Temporal PCB and mercury trends in Lake Erie fish communities: a dynamic linear modeling analysis. , 2011, Ecotoxicology and environmental safety.

[30]  M. Munawar,et al.  Assessment of lower food web in Hamilton Harbour, Lake Ontario, 2002 - 2004. , 2007 .

[31]  Y. Rao,et al.  Application of a Numerical Model for Circulation, Temperature and Pollutant Distribution in Hamilton Harbour , 2009 .

[32]  C. S. Holling The components of prédation as revealed by a study of small-mammal prédation of the European pine sawfly. , 1959 .

[33]  Gemma Manache,et al.  Sensitivity Analysis of a Water-Quality Model using Latin Hypercube Sampling , 2004 .

[34]  F. Pappenberger,et al.  Ignorance is bliss: Or seven reasons not to use uncertainty analysis , 2006 .

[35]  George B. Arhonditsis,et al.  Predicting the response of Hamilton Harbour to the nutrient loading reductions: A modeling analysis , 2011 .

[36]  Alexander H. Elliott,et al.  Estimating the sources and transport of nutrients in the Waikato River Basin, New Zealand , 2002 .

[37]  George B. Arhonditsis,et al.  Eutrophication model for Lake Washington (USA): Part I. Model description and sensitivity analysis , 2005 .

[38]  Keith Beven,et al.  Modelling everything everywhere: a new approach to decision-making for water management under uncertainty , 2012 .

[39]  Weitao Zhang,et al.  Predicting the Frequency of Water Quality Standard Violations Using Bayesian Calibration of Eutrophication Models , 2008 .

[40]  A. OHagan,et al.  Bayesian analysis of computer code outputs: A tutorial , 2006, Reliab. Eng. Syst. Saf..

[41]  M. Koops,et al.  Towards the development of an ecosystem model for the Hamilton Harbour, Ontario, Canada , 2012 .

[42]  Murray N. Charlton The Hamilton Harbour remedial action plan: eutrophication , 2001 .

[43]  Daniel E. Schindler,et al.  Effects of climatic variability on the thermal properties of Lake Washington , 2004 .

[44]  Uncovering Mechanisms of Interannual Variability from Short Ecological Time Series , 1999 .

[45]  M. Charlton,et al.  Water Quality Trends in Hamilton Harbour: Two Decades of Change in Nutrients and Chlorophyll a , 2009 .

[46]  Weitao Zhang,et al.  Addressing equifinality and uncertainty in eutrophication models , 2008 .

[47]  George B. Arhonditsis,et al.  Integration of numerical modeling and Bayesian analysis for setting water quality criteria in Hamilton Harbour, Ontario, Canada , 2011, Environ. Model. Softw..

[48]  Song S. Qian,et al.  Support of Total Maximum Daily Load Programs Using Spatially Referenced Regression Models , 2003 .

[49]  Timothy A. Cohn,et al.  Load Estimator (LOADEST): A FORTRAN Program for Estimating Constituent Loads in Streams and Rivers , 2004 .

[50]  Robert M. Hirsch,et al.  Mean square error of regression‐based constituent transport estimates , 1990 .

[51]  Mark E. Borsuk,et al.  On Monte Carlo methods for Bayesian inference , 2003 .

[52]  James O. Berger,et al.  A Framework for Validation of Computer Models , 2007, Technometrics.

[53]  Michael Rode,et al.  New challenges in integrated water quality modelling , 2010 .

[54]  Patricia A. Soranno,et al.  Factors affecting the timing of surface scums and epilimnetic blooms of blue-green algae in a eutrophic lake , 1997 .

[55]  Cajo J. F. ter Braak,et al.  Treatment of input uncertainty in hydrologic modeling: Doing hydrology backward with Markov chain Monte Carlo simulation , 2008 .

[56]  S. Watson,et al.  New Microcystin Concerns in the Lower Great Lakes , 2003 .

[57]  Satyendra P. Bhavsar,et al.  A Bayesian assessment of the PCB temporal trends in Lake Erie fish communities , 2011 .

[58]  D. Findlay,et al.  Iron‐mediated suppression of bloom‐forming cyanobacteria by oxine in a eutrophic lake , 2010 .

[59]  Thomas R. Anderson Confronting complexity: reply to Le Quéré and Flynn , 2006 .

[60]  Kenneth H. Reckhow,et al.  Nonlinear regression modeling of nutrient loads in streams: A Bayesian approach , 2005 .

[61]  Peter Reichert,et al.  Calibration of computationally demanding and structurally uncertain models with an application to a lake water quality model , 2012, Environ. Model. Softw..

[62]  Andrew M. Edwards,et al.  The role of higher predation in plankton population models , 2000 .

[63]  C. Wellen,et al.  Application of the SPARROW model in watersheds with limited information: a Bayesian assessment of the model uncertainty and the value of additional monitoring , 2014 .

[64]  S. Watson,et al.  Evaluating relationships between sediment chemistry and anoxic phosphorus and iron release across three different water bodies , 2013 .

[65]  V. Kvasnicka,et al.  Neural and Adaptive Systems: Fundamentals Through Simulations , 2001, IEEE Trans. Neural Networks.