Scaling properties and symmetrical patterns in the epidemiology of rotavirus infection.

The rich epidemiological database of the incidence of rotavirus, as a cause of severe diarrhoea in young children, coupled with knowledge of the natural history of the infection, can make this virus a paradigm for studies of epidemic dynamics. The cyclic recurrence of childhood rotavirus epidemics in unvaccinated populations provides one of the best documented phenomena in population dynamics. This paper makes use of epidemiological data on rotavirus infection in young children admitted to hospital in Melbourne, Australia from 1977 to 2000. Several mathematical methods were used to characterize the overall dynamics of rotavirus infections as a whole and individually as serotypes G1, G2, G3, G4 and G9. These mathematical methods are as follows: seasonal autoregressive integrated moving-average (SARIMA) models, power spectral density (PSD), higher-order spectral analysis (HOSA) (bispectrum estimation and quadratic phase coupling (QPC)), detrended fluctuation analysis (DFA), wavelet analysis (WA) and a surrogate data analysis technique. Each of these techniques revealed different dynamic aspects of rotavirus epidemiology. In particular, we confirm the existence of an annual, biannual and a quinquennial period but additionally we found other embedded cycles (e.g. ca. 3 years). There seems to be an overall unique geometric and dynamic structure of the data despite the apparent changes in the dynamics of the last years. The inherent dynamics seems to be conserved regardless of the emergence of new serotypes, the re-emergence of old serotypes or the transient disappearance of a particular serotype. More importantly, the dynamics of all serotypes is multiple synchronized so that they behave as a single entity at the epidemic level. Overall, the whole dynamics follow a scale-free power-law fractal scaling behaviour. We found that there are three different scaling regions in the time-series, suggesting that processes influencing the epidemic dynamics of rotavirus over less than 12 months differ from those that operate between 1 and ca. 3 years, as well as those between 3 and ca. 5 years. To discard the possibility that the observed patterns could be due to artefacts, we applied a surrogate data analysis technique which enabled us to discern if only random components or linear features of the incidence of rotavirus contribute to its dynamics. The global dynamics of the epidemic is portrayed by wavelet-based incidence analysis. The resulting wavelet transform of the incidence of rotavirus crisply reveals a repeating pattern over time that looks similar on many scales (a property called self-similarity). Both the self-similar behaviour and the absence of a single characteristic scale of the power-law fractal-like scaling of the incidence of rotavirus infection imply that there is not a universal inherently more virulent serotype to which severe gastroenteritis can uniquely be ascribed.

[1]  Ingrid Daubechies,et al.  Ten Lectures on Wavelets , 1992 .

[2]  R. Glass,et al.  Cohort study of rotavirus serotype patterns in symptomatic and asymptomatic infections in Mexican children , 1993, The Pediatric infectious disease journal.

[3]  Alessandro Vespignani,et al.  Epidemic dynamics and endemic states in complex networks. , 2001, Physical review. E, Statistical, nonlinear, and soft matter physics.

[4]  H. Haus Topics in the theory of random noise, vol. I , 1964 .

[5]  Georgios B. Giannakis,et al.  Self coupled harmonics: stationary and cyclostationary approaches , 1994, Proceedings of ICASSP '94. IEEE International Conference on Acoustics, Speech and Signal Processing.

[6]  H. Akaike A Bayesian extension of the minimum AIC procedure of autoregressive model fitting , 1979 .

[7]  M. José,et al.  Oscillatory fluctuations in the incidence of rotavirus infections by serotypes 1, 2, 3, and 4. , 1996, Journal of diarrhoeal diseases research.

[8]  H. Greenberg,et al.  Diversity of rotavirus serotypes in Mexican infants with gastroenteritis , 1990, Journal of clinical microbiology.

[9]  A. Goldberger,et al.  Finite-size effects on long-range correlations: implications for analyzing DNA sequences. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[10]  H. Stanley,et al.  Quantification of scaling exponents and crossover phenomena in nonstationary heartbeat time series. , 1995, Chaos.

[11]  R. Glass,et al.  Annual rotavirus epidemic patterns in North America. Results of a 5-year retrospective survey of 88 centers in Canada, Mexico, and the United States. Rotavirus Study Group. , 1990, JAMA.

[12]  G. Schwarz Estimating the Dimension of a Model , 1978 .

[13]  R. L. Stratonovich,et al.  Topics in the theory of random noise , 1967 .

[14]  R. Chanock,et al.  Pediatric viral gastroenteritis during eight years of study , 1983, Journal of clinical microbiology.

[15]  T. Rao,et al.  An Introduction to Bispectral Analysis and Bilinear Time Series Models , 1984 .

[16]  R. Glass,et al.  Distribution of serotypes of human rotavirus in different populations , 1992, Journal of clinical microbiology.

[17]  Bruce J. West,et al.  ON THE UBIQUITY OF 1/f NOISE , 1989 .

[18]  James Theiler,et al.  Testing for nonlinearity in time series: the method of surrogate data , 1992 .

[19]  R. May,et al.  How Viruses Spread Among Computers and People , 2001, Science.

[20]  C. Kirkwood,et al.  Report of the Australian Rotavirus Surveillance Program, 2000/2001. , 2001, Communicable diseases intelligence quarterly report.

[21]  O. Bjørnstad,et al.  Travelling waves and spatial hierarchies in measles epidemics , 2001, Nature.

[22]  R. Anderson,et al.  Power laws governing epidemics in isolated populations , 1996, Nature.

[23]  Leo J. Tick,et al.  The Estimation of “Transfer Functions” of Quadratic Systems , 1961 .

[24]  E. Bacry,et al.  The Multifractal Formalism Revisited with Wavelets , 1994 .

[25]  George E. P. Box,et al.  Time Series Analysis: Forecasting and Control , 1977 .

[26]  Bruce J. West Fractal Forms in Physiology , 1990 .

[27]  Alessandro Vespignani,et al.  Epidemic spreading in scale-free networks. , 2000, Physical review letters.

[28]  R. Glass,et al.  Rotavirus diarrhea in Bangladeshi children: correlation of disease severity with serotypes , 1992, Journal of clinical microbiology.

[29]  S. Sattar,et al.  Survival and vehicular spread of human rotaviruses: possible relation to seasonality of outbreaks. , 1991, Reviews of infectious diseases.

[30]  R. Feachem,et al.  Interventions for the control of diarrhoeal diseases among young children: rotavirus and cholera immunization. , 1985, Bulletin of the World Health Organization.

[31]  M. Estes,et al.  Rotavirus gene structure and function. , 1989, Microbiological reviews.

[32]  R. Bishop Natural history of human rotavirus infection. , 1996, Archives of virology. Supplementum.

[33]  G. McDarby,et al.  Establishing the relation between detrended fluctuation analysis and power spectral density analysis for stochastic processes , 2000, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[34]  M. José,et al.  Epidemiological model of diarrhoeal diseases and its application in prevention and control. , 1994, Vaccine.

[35]  M. Rennels,et al.  Possible Association of Intussusception With Rotavirus Vaccination , 1999, Pediatrics.

[36]  Gwilym M. Jenkins,et al.  Time series analysis, forecasting and control , 1972 .

[37]  C. Peng,et al.  Mosaic organization of DNA nucleotides. , 1994, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[38]  Jerry M. Mendel,et al.  ARMA parameter estimation using only output cumulants , 1990, IEEE Trans. Acoust. Speech Signal Process..

[39]  John L. Casti Chaos data analyzer , 1996 .

[40]  L. Unicomb,et al.  Rotavirus serotypes causing severe acute diarrhea in young children in six Australian cities, 1989 to 1992 , 1994, Journal of clinical microbiology.

[41]  M. Shlesinger,et al.  Fractal Time and 1/f Noise in Complex Systems , 1987 .

[42]  A. Cascio,et al.  Rotavirus gastroenteritis in Italian children: can severity of symptoms be related to the infecting virus? , 2001, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[43]  R. Shumway Applied Statistical Time Series Analysis , 1988 .

[44]  G. Barnes,et al.  Etiology of Acute Gastroenteritis in Hospitalized Children in Melbourne, Australia, from April 1980 to March 1993 , 1998, Journal of Clinical Microbiology.

[45]  L. Amaral,et al.  The web of human sexual contacts , 2001, Nature.

[46]  G. Barnes,et al.  Epidemiology of rotavirus serotypes in Melbourne, Australia, from 1973 to 1989 , 1991, Journal of clinical microbiology.

[47]  M. B. Priestley,et al.  Non-linear and non-stationary time series analysis , 1990 .

[48]  Lennart Ljung,et al.  On the estimation of transfer functions , 1985, Autom..