Establishment of Tn5096-Based Transposon Mutagenesis in Gordonia polyisoprenivorans

ABSTRACT The transposons Tn5, Tn10, Tn611, and Tn5096 were characterized regarding transposition in Gordonia polyisoprenivorans strain VH2. No insertional mutants were obtained employing Tn5 or Tn10. The thermosensitive plasmid pCG79 harboring Tn611 integrated into the chromosome of G. polyisoprenivorans; however, the insertional mutants were fairly unstable und reverted frequently to the wild-type phenotype. In contrast, various stable mutants were obtained employing Tn5096-mediated transposon mutagenesis. Auxotrophic mutants, mutants defective or deregulated in carotenoid biosynthesis, and mutants defective in utilization of rubber and/or highly branched isoprenoid hydrocarbons were obtained by integration of plasmid pMA5096 harboring Tn5096 as a whole into the genome. From about 25,000 isolated mutants, the insertion loci of pMA5096 were subsequently mapped in 20 independent mutants in genes which could be related to the above-mentioned metabolic pathways or to putative regulation proteins. Analyses of the genotypes of pMA5096-mediated mutants defective in biodegradation of poly(cis-1,4-isoprene) did not reveal homologues to recently identified genes coding for enzymes catalyzing the initial cleavage of poly(cis-1,4-isoprene). One rubber-negative mutant was disrupted in mcr, encoding an α-methylacyl-coenzyme A racemase. This mutant was defective in degradation of poly(cis-1,4-isoprene) and also of highly branched isoprenoid hydrocarbons.

[1]  A. Steinbüchel,et al.  Biodegradation of Natural Rubber and Related Compounds: Recent Insights into a Hardly Understood Catabolic Capability of Microorganisms , 2005, Applied and Environmental Microbiology.

[2]  A. Steinbüchel,et al.  Identification and characterization of genes from Streptomyces sp. strain K30 responsible for clear zone formation on natural rubber latex and poly(cis-1,4-isoprene) rubber degradation. , 2005, Biomacromolecules.

[3]  D. Jendrossek,et al.  Novel Type of Heme-Dependent Oxygenase Catalyzes Oxidative Cleavage of Rubber (Poly-cis-1,4-Isoprene) , 2004, Applied and Environmental Microbiology.

[4]  P. V. Van Veldhoven,et al.  Role of α-Methylacyl Coenzyme A Racemase in the Degradation of Methyl-Branched Alkanes by Mycobacterium sp. Strain P101 , 2004, Journal of bacteriology.

[5]  R. Clark,et al.  IscA Mediates Iron Delivery for Assembly of Iron-Sulfur Clusters in IscU under the Limited Accessible Free Iron Conditions* , 2004, Journal of Biological Chemistry.

[6]  S. Brunak,et al.  Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.

[7]  A. Steinbüchel,et al.  Biology of the Metabolically Diverse Genus Gordonia , 2004, Applied and Environmental Microbiology.

[8]  Byung Il Lee,et al.  Ring‐shaped architecture of RecR: implications for its role in homologous recombinational DNA repair , 2004, The EMBO journal.

[9]  A. Steinbüchel,et al.  Characterization of the 101-Kilobase-Pair Megaplasmid pKB1, Isolated from the Rubber-Degrading Bacterium Gordonia westfalica Kb1 , 2004, Journal of bacteriology.

[10]  M. Weiss,et al.  Biochemical and genetic analysis of the nifUSVWZM cluster from Azotobacter vinelandii , 1989, Molecular and General Genetics MGG.

[11]  H. Schlegel,et al.  Ein Submersverfahren zur Kultur wasserstoffoxydierender Bakterien: Wachstumsphysiologische Untersuchungen , 2004, Archiv für Mikrobiologie.

[12]  A. Steinbüchel,et al.  Identification and Application of Plasmids Suitable for Transfer of Foreign DNA to Members of the Genus Gordonia , 2003, Applied and Environmental Microbiology.

[13]  P. Kiley,et al.  The role of Fe-S proteins in sensing and regulation in bacteria. , 2003, Current opinion in microbiology.

[14]  S. Ouchane,et al.  Characterization of unusual hydroxy- and ketocarotenoids in Rubrivivax gelatinosus: involvement of enzyme CrtF or CrtA , 2003, Archives of Microbiology.

[15]  R. Jain,et al.  Origins of the 2,4-Dinitrotoluene Pathway , 2002, Journal of bacteriology.

[16]  C. Roessner,et al.  Biosynthesis of cobalamin (vitamin B(12)). , 2001, Biochemical Society transactions.

[17]  R. Banerjee,et al.  Controlling the reactivity of radical intermediates by coenzyme B(12)-dependent methylmalonyl-CoA mutase. , 2001, Biochemical Society transactions.

[18]  A. Steinbüchel,et al.  Taxonomic characterization of two rubber degrading bacteria belonging to the species Gordonia polyisoprenivorans and analysis of hyper variable regions of 16S rDNA sequences. , 2001, FEMS microbiology letters.

[19]  C. Krebs,et al.  IscA, an alternate scaffold for Fe-S cluster biosynthesis. , 2001, Biochemistry.

[20]  N. Misawa,et al.  Phytoene desaturase, CrtI, of the purple photosynthetic bacterium, Rubrivivax gelatinosus, produces both neurosporene and lycopene. , 2001, Plant & cell physiology.

[21]  Y. Takahashi,et al.  Genetic analysis of the isc operon in Escherichia coli involved in the biogenesis of cellular iron-sulfur proteins. , 2001, Journal of biochemistry.

[22]  R. Ribas-Aparicio,et al.  Structural and functional characterization of the recR gene of Streptomyces , 2001, Molecular Genetics and Genomics.

[23]  D. Jendrossek,et al.  Bacterial degradation of natural and synthetic rubber. , 2001, Biomacromolecules.

[24]  D. Jendrossek,et al.  Physiological and Chemical Investigations into Microbial Degradation of Synthetic Poly(cis-1,4-isoprene) , 2000, Applied and Environmental Microbiology.

[25]  A. Steinbüchel,et al.  Establishment of a gene transfer system for Rhodococcus opacus PD630 based on electroporation and its application for recombinant biosynthesis of poly(3-hydroxyalkanoic acids) , 1999, Applied Microbiology and Biotechnology.

[26]  P. Kiley,et al.  Fe-S proteins in sensing and regulatory functions. , 1999, Current opinion in chemical biology.

[27]  S. Takaichi Carotenoids and Carotenogenesis in Anoxygenic Photosynthetic Bacteria , 1999 .

[28]  Andrew J. Young,et al.  The Photochemistry of Carotenoids , 1999, Advances in Photosynthesis and Respiration.

[29]  R. Cogdell,et al.  Carotenoid diversity: a modular role for the phytoene desaturase step , 1998 .

[30]  P. Dyson,et al.  Transposon mutagenesis with IS6100 in the avermectin-producer Streptomyces avermitilis. , 1998, Microbiology.

[31]  D. Dean,et al.  Assembly of Iron-Sulfur Clusters , 1998, The Journal of Biological Chemistry.

[32]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[33]  A Martinez,et al.  Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps , 1997, Journal of bacteriology.

[34]  R. H. Baltz,et al.  Gene transfer and transposition mutagenesis in Streptomyces roseosporus: mapping of insertions that influence daptomycin or pigment production. , 1996, Microbiology.

[35]  B. Gicquel,et al.  Efficient transposition in mycobacteria: construction of Mycobacterium smegmatis insertional mutant libraries , 1994, Journal of bacteriology.

[36]  J. Bolin,et al.  Nitrogenase metalloclusters: structures, organization, and synthesis , 1993, Journal of bacteriology.

[37]  R. H. Baltz,et al.  Industrial Microorganisms: Basic and Applied Molecular Genetics , 1993 .

[38]  B. Gicquel,et al.  Temperature-sensitive mutants of the Mycobacterium plasmid pAL5000. , 1992, FEMS microbiology letters.

[39]  P. Solenberg,et al.  Transposition of Tn5096 and related transposons in Streptomyces species. , 1992, Gene.

[40]  R. H. Baltz,et al.  Transposition of Tn5096 from a temperature-sensitive transducible plasmid in Streptomyces spp , 1991, Journal of bacteriology.

[41]  T. Goosen,et al.  Transformation of Mycobacterium aurum and Mycobacterium smegmatis with the broad host‐range Gram‐negative cosmid vector pJRD215 , 1991, Molecular microbiology.

[42]  P. Solenberg,et al.  Transposition of Tn5096 and other IS493 derivatives in Streptomyces griseofuscus , 1991, Journal of bacteriology.

[43]  A. Steinbüchel,et al.  Formation of polyesters consisting of medium-chain-length 3-hydroxyalkanoic acids from gluconate by Pseudomonas aeruginosa and other fluorescent pseudomonads , 1990, Applied and environmental microbiology.

[44]  V. de Lorenzo,et al.  Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria , 1990, Journal of bacteriology.

[45]  Juliano Timm,et al.  Transposition of an antibiotic resistance element in mycobacteria , 1990, Nature.

[46]  R. Harris,et al.  Purification and characterization of methylmalonate-semialdehyde dehydrogenase from rat liver. Identity to malonate-semialdehyde dehydrogenase. , 1989, The Journal of biological chemistry.

[47]  P. Solenberg,et al.  Method for selection of transposable DNA and characterization of a new insertion sequence, IS493, from Streptomyces lividans , 1989, Journal of bacteriology.

[48]  J. Moniz-Pereira,et al.  Complete nucleotide sequence of pAL5000, a plasmid from Mycobacterium fortuitum. , 1988, Gene.

[49]  J. Mekalanos,et al.  A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR , 1988, Journal of bacteriology.

[50]  W. Bullock XL1-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection. , 1987 .

[51]  J. Halpern Mechanisms of coenzyme B12-dependent rearrangements. , 1985, Science.

[52]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[53]  A. Pühler,et al.  A Broad Host Range Mobilization System for In Vivo Genetic Engineering: Transposon Mutagenesis in Gram Negative Bacteria , 1983, Bio/Technology.

[54]  H. Birnboim,et al.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA. , 1979, Nucleic acids research.

[55]  H. Birnboim,et al.  A RAPID ALKALINE EXTRACTION PROCEDURE FOR SCREENING RECOMBINANT DNA , 1979 .

[56]  J. R. Sokatch,et al.  Properties of purified methylmalonate semialdehyde dehydrogenase of Pseudomonas aeruginosa. , 1970, The Journal of biological chemistry.