Sequence Alignment in Bioinformatics
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[1] S. Karlin,et al. Applications and statistics for multiple high-scoring segments in molecular sequences. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[2] Rolf Olsen,et al. Rapid Assessment of Extremal Statistics for Gapped Local Alignment , 1999, ISMB.
[3] Sean R. Eddy,et al. Maximum Discrimination Hidden Markov Models of Sequence Consensus , 1995, J. Comput. Biol..
[4] Yicheng Zhang,et al. Kinetic roughening phenomena, stochastic growth, directed polymers and all that. Aspects of multidisciplinary statistical mechanics , 1995 .
[5] Martin Vingron,et al. Sequence Comparison Significance and Poisson Approximation , 1994 .
[6] M. Waterman,et al. Stochastic scrabble: large deviations for sequences with scores , 1988, Journal of Applied Probability.
[7] C. Chothia,et al. Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[8] J. Felsenstein,et al. Inching toward reality: An improved likelihood model of sequence evolution , 2004, Journal of Molecular Evolution.
[9] Ralf Bundschuh,et al. An analytic approach to significance assessment in local sequence alignment with gaps , 2000, RECOMB '00.
[10] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[11] Richard Mott,et al. Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores , 1992 .
[12] S F Altschul,et al. Local alignment statistics. , 1996, Methods in enzymology.
[13] S. Karlin,et al. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[14] S. B. Needleman,et al. A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.
[15] Fisher,et al. Directed paths in a random potential. , 1991, Physical review. B, Condensed matter.
[16] S. Henikoff,et al. Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[17] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[18] Terence Hwa,et al. Statistical significance and extremal ensemble of gapped local hybrid alignment , 2002 .
[19] Amir Dembo,et al. LIMIT DISTRIBUTIONS OF MAXIMAL SEGMENTAL SCORE AMONG MARKOV-DEPENDENT PARTIAL SUMS , 1992 .
[20] Richard Mott,et al. Approximate Statistics of Gapped Alignments , 1999, J. Comput. Biol..
[21] M. Waterman,et al. A Phase Transition for the Score in Matching Random Sequences Allowing Deletions , 1994 .
[22] M S Waterman,et al. Rapid and accurate estimates of statistical significance for sequence data base searches. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[23] Temple F. Smith,et al. The statistical distribution of nucleic acid similarities. , 1985, Nucleic acids research.
[24] Terence Hwa,et al. Statistical Significance of Probabilistic Sequence Alignment and Related Local Hidden Markov Models , 2001, J. Comput. Biol..
[25] M. Bishop,et al. Maximum likelihood alignment of DNA sequences. , 1986, Journal of molecular biology.
[26] Benjamin Yakir,et al. Approximate p-values for local sequence alignments , 2000 .
[27] M. O. Dayhoff,et al. Atlas of protein sequence and structure , 1965 .
[28] Michael Gribskov,et al. Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching , 1996, Comput. Chem..
[29] M. Waterman,et al. Phase transitions in sequence matches and nucleic acid structure. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[30] J. Felsenstein,et al. An evolutionary model for maximum likelihood alignment of DNA sequences , 1991, Journal of Molecular Evolution.
[31] A. Dembo,et al. Limit Distribution of Maximal Non-Aligned Two-Sequence Segmental Score , 1994 .