Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1

[1]  Wentao Yang,et al.  WormExp: a web-based application for a Caenorhabditis elegans-specific gene expression enrichment analysis , 2016, Bioinform..

[2]  N. Pujol,et al.  Local and long-range activation of innate immunity by infection and damage in C. elegans. , 2016, Current opinion in immunology.

[3]  P. Rosenstiel,et al.  Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans toward pathogenic Bacillus thuringiensis. , 2015, Developmental and comparative immunology.

[4]  E. Bornberg-Bauer,et al.  Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes , 2015, PLoS biology.

[5]  Jing Tian,et al.  Molecular mechanisms of resistance to human pathogenic bacteria in Caenorhabditis elegans by MEV-1 mediated oxidative stress. , 2015, Biochemical and biophysical research communications.

[6]  H. Schulenburg,et al.  Why we need more ecology for genetic models such as C. elegans. , 2015, Trends in genetics : TIG.

[7]  S. Cherry,et al.  Immunity in Drosophila melanogaster — from microbial recognition to whole-organism physiology , 2014, Nature Reviews Immunology.

[8]  Joshua D. Meisel,et al.  Behavioral avoidance of pathogenic bacteria by Caenorhabditis elegans. , 2014, Trends in immunology.

[9]  L. B. Snoek,et al.  Widespread Genomic Incompatibilities in Caenorhabditis elegans , 2014, G3: Genes, Genomes, Genetics.

[10]  P. Seeberger,et al.  The C-type lectin-like domain containing proteins Clec-39 and Clec-49 are crucial for Caenorhabditis elegans immunity against Serratia marcescens infection. , 2014, Developmental and comparative immunology.

[11]  H. Schulenburg,et al.  The prevalence of Caenorhabditis elegans across 1.5 years in selected North German locations: the importance of substrate type, abiotic parameters, and Caenorhabditis competitors , 2014, BMC Ecology.

[12]  Cori Bargmann,et al.  Multigenic Natural Variation Underlies Caenorhabditis elegans Olfactory Preference for the Bacterial Pathogen Serratia marcescens , 2013, G3: Genes, Genomes, Genetics.

[13]  L. B. Snoek,et al.  Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations , 2013, BMC Biology.

[14]  E. Troemel,et al.  Caenorhabditis elegans as a model for intracellular pathogen infection , 2013, Cellular microbiology.

[15]  H. Fienberg,et al.  A Matching-Allele Model Explains Host Resistance to Parasites , 2013, Current Biology.

[16]  Cole Trapnell,et al.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.

[17]  David G Hendrickson,et al.  Differential analysis of gene regulation at transcript resolution with RNA-seq , 2012, Nature Biotechnology.

[18]  Sean R. Davis,et al.  NCBI GEO: archive for functional genomics data sets—update , 2012, Nucleic Acids Res..

[19]  Yang Li,et al.  WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp , 2012, Nucleic Acids Res..

[20]  L. B. Snoek,et al.  Genetic variation for stress-response hormesis in C. elegans lifespan , 2012, Experimental Gerontology.

[21]  A. Lacy-Hulbert,et al.  EGL-9 Controls C. elegans Host Defense Specificity through Prolyl Hydroxylation-Dependent and -Independent HIF-1 Pathways , 2012, PLoS pathogens.

[22]  M. Félix,et al.  Population dynamics and habitat sharing of natural populations of Caenorhabditis elegans and C. briggsae , 2012, BMC Biology.

[23]  C. Nielsen-Leroux,et al.  How the insect pathogen bacteria Bacillus thuringiensis and Xenorhabdus/Photorhabdus occupy their hosts. , 2012, Current opinion in microbiology.

[24]  L. B. Snoek,et al.  Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegans , 2012, G3: Genes | Genomes | Genetics.

[25]  H. Schulenburg,et al.  Activation of the Caenorhabditis elegans FOXO family transcription factor DAF-16 by pathogenic Bacillus thuringiensis. , 2012, Developmental and comparative immunology.

[26]  S. Nurrish,et al.  Behavioral and Immune Responses to Infection Require Gαq- RhoA Signaling in C. elegans , 2012, PLoS pathogens.

[27]  Leonid Kruglyak,et al.  Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity , 2011, Nature Genetics.

[28]  K. Ikeo,et al.  Effective gene collection from the metatranscriptome of marine microorganisms , 2011, BMC Genomics.

[29]  Dennis H Kim,et al.  Natural Polymorphisms in C. elegans HECW-1 E3 Ligase Affect Pathogen Avoidance Behaviour , 2011, Nature.

[30]  L. B. Snoek,et al.  A fitness assay for comparing RNAi effects across multiple C. elegans genotypes , 2011, BMC Genomics.

[31]  H. Schulenburg,et al.  Host–parasite local adaptation after experimental coevolution of Caenorhabditis elegans and its microparasite Bacillus thuringiensis , 2011, Proceedings of the Royal Society B: Biological Sciences.

[32]  Yanzhi Du,et al.  AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses , 2011, PloS one.

[33]  T. Roeder,et al.  Protist-Type Lysozymes of the Nematode Caenorhabditis elegans Contribute to Resistance against Pathogenic Bacillus thuringiensis , 2011, PloS one.

[34]  Valerie Reinke,et al.  A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans , 2011, PloS one.

[35]  Leonid Kruglyak,et al.  Catecholamine receptor polymorphisms affect decision-making in C. elegans , 2011, Nature.

[36]  J. Schwartz,et al.  Global Functional Analyses of Cellular Responses to Pore-Forming Toxins , 2011, PLoS pathogens.

[37]  Mark Gerstein,et al.  Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. , 2011, Genome research.

[38]  M. Félix,et al.  The natural history of Caenorhabditis elegans , 2010, Current Biology.

[39]  Subhajyoti De,et al.  Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. elegans , 2010, PloS one.

[40]  L. Kruglyak,et al.  Selection at Linked Sites Shapes Heritable Phenotypic Variation in C. elegans , 2010, Science.

[41]  L. B. Snoek,et al.  Global Genetic Robustness of the Alternative Splicing Machinery in Caenorhabditis elegans , 2010, Genetics.

[42]  J. Bennett,et al.  A Trojan horse mechanism of bacterial pathogenesis against nematodes , 2010, Proceedings of the National Academy of Sciences.

[43]  Jenifer N. Saldanha,et al.  C. elegans SWAN-1 Binds to EGL-9 and Regulates HIF-1-Mediated Resistance to the Bacterial Pathogen Pseudomonas aeruginosa PAO1 , 2010, PLoS pathogens.

[44]  Frederick M. Ausubel,et al.  Distinct Pathogenesis and Host Responses during Infection of C. elegans by P. aeruginosa and S. aureus , 2010, PLoS pathogens.

[45]  L. B. Snoek,et al.  Genome-wide gene expression regulation as a function of genotype and age in C. elegans. , 2010, Genome research.

[46]  H. Schulenburg,et al.  Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasite , 2010, Proceedings of the National Academy of Sciences.

[47]  M. Robinson,et al.  A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.

[48]  S. Hannenhalli,et al.  Genetic and Physiological Activation of Osmosensitive Gene Expression Mimics Transcriptional Signatures of Pathogen Infection in C. elegans , 2010, PloS one.

[49]  H. Cinar,et al.  Hypoxia and the Hypoxic Response Pathway Protect against Pore-Forming Toxins in C. elegans , 2009, PLoS pathogens.

[50]  Daniel E. Newburger,et al.  A Multiparameter Network Reveals Extensive Divergence between C. elegans bHLH Transcription Factors , 2009, Cell.

[51]  L. B. Snoek,et al.  A genome-wide library of CB4856/N2 introgression lines of Caenorhabditis elegans , 2009, Nucleic acids research.

[52]  T. Johnson,et al.  Oxidative stress and longevity in Caenorhabditis elegans as mediated by SKN‐1 , 2009, Aging cell.

[53]  Cole Trapnell,et al.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.

[54]  Leonid Kruglyak,et al.  A Polymorphism in npr-1 Is a Behavioral Determinant of Pathogen Susceptibility in C. elegans , 2009, Science.

[55]  Joachim Kurtz,et al.  Introduction. Ecological immunology , 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.

[56]  Brad T. Sherman,et al.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.

[57]  Evan Z. Macosko,et al.  Innate Immunity in Caenorhabditis elegans Is Regulated by Neurons Expressing NPR-1/GPCR , 2008, Science.

[58]  Paul Schmid-Hempel,et al.  Parasite immune evasion: a momentous molecular war. , 2008, Trends in ecology & evolution.

[59]  Jennifer L. Tenor,et al.  A conserved Toll‐like receptor is required for Caenorhabditis elegans innate immunity , 2008, EMBO reports.

[60]  J. Hoffmann,et al.  The Drosophila systemic immune response: sensing and signalling during bacterial and fungal infections , 2007, Nature Reviews Immunology.

[61]  H. Schulenburg,et al.  The genetics of pathogen avoidance in Caenorhabditis elegans , 2007, Molecular microbiology.

[62]  H. Schulenburg,et al.  How do invertebrates generate a highly specific innate immune response? , 2007, Molecular immunology.

[63]  Windy A. Boyd,et al.  Toxicogenomic analysis of Caenorhabditis elegans reveals novel genes and pathways involved in the resistance to cadmium toxicity , 2007, Genome Biology.

[64]  H. Schulenburg,et al.  The role of Caenorhabditis elegans insulin‐like signaling in the behavioral avoidance of pathogenic Bacillus thuringiensis , 2007, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[65]  P. Schmid-Hempel,et al.  THE GENETIC ARCHITECTURE OF IMMUNE DEFENSE AND REPRODUCTION IN MALE BOMBUS TERRESTRIS BUMBLEBEES , 2007, Evolution; international journal of organic evolution.

[66]  Joachim Selbig,et al.  pcaMethods - a bioconductor package providing PCA methods for incomplete data , 2007, Bioinform..

[67]  Steven J. M. Jones,et al.  The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. , 2007, Developmental biology.

[68]  Cori Bargmann,et al.  Detection and avoidance of a natural product from the pathogenic bacterium Serratia marcescens by Caenorhabditis elegans , 2007, Proceedings of the National Academy of Sciences.

[69]  Z. Prokop,et al.  Environmental influence on the genetic correlations between life-history traits in Caenorhabditis elegans , 2007, Heredity.

[70]  Jingyuan Fu,et al.  Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans , 2006, PLoS genetics.

[71]  M. Ronen,et al.  A conserved role for a GATA transcription factor in regulating epithelial innate immune responses , 2006, Proceedings of the National Academy of Sciences.

[72]  Valerie Reinke,et al.  p38 MAPK Regulates Expression of Immune Response Genes and Contributes to Longevity in C. elegans , 2006, PLoS genetics.

[73]  Cornelia I Bargmann,et al.  A Distributed Chemosensory Circuit for Oxygen Preference in C. elegans , 2006, PLoS biology.

[74]  Richard Mott,et al.  Genomic clusters, putative pathogen recognition molecules, and antimicrobial genes are induced by infection of C. elegans with M. nematophilum. , 2006, Genome research.

[75]  Mario de Bono,et al.  Behavioral Motifs and Neural Pathways Coordinating O2 Responses and Aggregation in C. elegans , 2006, Current Biology.

[76]  Theresa Stiernagle Maintenance of C. elegans. , 2006, WormBook : the online review of C. elegans biology.

[77]  Cornelia I. Bargmann,et al.  Pathogenic bacteria induce aversive olfactory learning in Caenorhabditis elegans , 2005, Nature.

[78]  R. Menzel,et al.  Expression profiling of five different xenobiotics using a Caenorhabditis elegans whole genome microarray. , 2005, Chemosphere.

[79]  J. Griffitts,et al.  Many roads to resistance: how invertebrates adapt to Bt toxins , 2005, BioEssays : news and reviews in molecular, cellular and developmental biology.

[80]  Mario de Bono,et al.  Experience-Dependent Modulation of C. elegans Behavior by Ambient Oxygen , 2005, Current Biology.

[81]  Donald L Riddle,et al.  Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression. , 2005, Genome research.

[82]  Alok J. Saldanha,et al.  Java Treeview - extensible visualization of microarray data , 2004, Bioinform..

[83]  David Gems,et al.  Shared Transcriptional Signature in Caenorhabditis elegans Dauer Larvae and Long-lived daf-2 Mutants Implicates Detoxification System in Longevity Assurance* , 2004, Journal of Biological Chemistry.

[84]  J. Corbeil,et al.  Mitogen-activated protein kinase pathways defend against bacterial pore-forming toxins. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[85]  S Miyano,et al.  Open source clustering software. , 2004, Bioinformatics.

[86]  H. Schulenburg,et al.  Natural variation in the response of Caenorhabditis elegans towards Bacillus thuringiensis , 2004, Parasitology.

[87]  Douglas A. Hosack,et al.  Identifying biological themes within lists of genes with EASE , 2003, Genome Biology.

[88]  Cori Bargmann,et al.  Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans , 2003, Nature.

[89]  Cynthie Wong,et al.  Bacillus thuringiensis crystal proteins that target nematodes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[90]  Frederick M. Ausubel,et al.  A Conserved p38 MAP Kinase Pathway in Caenorhabditis elegans Innate Immunity , 2002, Science.

[91]  T. Bogaert,et al.  A systematic gene expression screen of Caenorhabditis elegans cytochrome P450 genes reveals CYP35 as strongly xenobiotic inducible. , 2001, Archives of biochemistry and biophysics.

[92]  Joshua M. Stuart,et al.  A Gene Expression Map for Caenorhabditis elegans , 2001, Science.

[93]  Leo X. Liu,et al.  Addresses: 1Laboratoire de Génétique et , 2022 .

[94]  Cori Bargmann,et al.  Natural Variation in a Neuropeptide Y Receptor Homolog Modifies Social Behavior and Food Response in C. elegans , 1998, Cell.

[95]  Frederick M. Ausubel,et al.  Evolution of host innate defence: insights from Caenorhabditis elegans and primitive invertebrates , 2010, Nature Reviews Immunology.

[96]  Brad T. Sherman,et al.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.

[97]  H. Schulenburg,et al.  The effect of Photorhabdus luminescens (Enterobacteriaceae) on the survival, development, reproduction and behaviour of Caenorhabditis elegans (Nematoda: Rhabditidae). , 2007, Environmental microbiology.

[98]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[99]  Michael E. Tipping,et al.  Probabilistic Principal Component Analysis , 1999 .

[100]  A. Coomans,et al.  Effect of a nematicidal Bacillus thuringiensis strain on free- living nematodes : 3. Characterization of the intoxication process , 1996 .

[101]  Rita Van Driessche,et al.  Germination of Bacillus thuringiensis spores in bacteriophagous nematodes (Nematoda: Rhabditida). , 1995, Journal of invertebrate pathology.

[102]  G. Borgonie,et al.  Nematocidal activity of bacillus-thuringiensis isolates , 1995 .