Multiscale coupling of mesoscopic- and atomistic-level lipid bilayer simulations.
暂无分享,去创建一个
[1] Alan E. Mark,et al. Effect of Undulations on Surface Tension in Simulated Bilayers , 2001 .
[2] Gregory A. Voth,et al. Interfacing continuum and molecular dynamics: An application to lipid bilayers , 2001 .
[3] A Ajdari,et al. Effective-area elasticity and tension of micromanipulated membranes. , 2001, Physical review letters.
[4] O. Hamill,et al. Molecular basis of mechanotransduction in living cells. , 2001, Physiological reviews.
[5] K. Esselink,et al. Computer simulations of a water/oil interface in the presence of micelles , 1990, Nature.
[6] Bernard R. Brooks,et al. Computer simulation of liquid/liquid interfaces. I. Theory and application to octane/water , 1995 .
[7] Eduardo Perozo,et al. Structure and mechanism in prokaryotic mechanosensitive channels. , 2003, Current opinion in structural biology.
[8] Reinhard Lipowsky,et al. Structure and dynamics of membranes , 1995 .
[9] G. Voth,et al. A new perspective on the coarse-grained dynamics of fluids. , 2004, The Journal of chemical physics.
[10] John C. Shelley,et al. Computer simulation of surfactant solutions , 2000 .
[11] L. Kramer. Theory of Light Scattering from Fluctuations of Membranes and Monolayers , 1971 .
[12] H. Rafii-Tabar,et al. Multi-scale computational modelling of solidification phenomena , 2002 .
[13] J Feder,et al. Coupling particles and fields in a diffusive hybrid model. , 2001, Physical review. E, Statistical, nonlinear, and soft matter physics.
[14] S. A. Shkulipa,et al. Buckling and persistence length of an amphiphilic worm from molecular dynamics simulations , 2003 .
[15] V. Bulatov,et al. Connecting atomistic and mesoscale simulations of crystal plasticity , 1998, Nature.
[16] M. Stevens,et al. Coarse-grained simulations of lipid bilayers. , 2004, The Journal of chemical physics.
[17] E. Evans,et al. Effect of chain length and unsaturation on elasticity of lipid bilayers. , 2000, Biophysical journal.
[18] Alexander M. Smondyrev,et al. United atom force field for phospholipid membranes: Constant pressure molecular dynamics simulation of dipalmitoylphosphatidicholine/water system , 1999 .
[19] A. Mark,et al. Coarse grained model for semiquantitative lipid simulations , 2004 .
[20] M. Plischke,et al. Molecular dynamics of tethered membranes. , 1989, Physical review letters.
[21] O'Connell,et al. Molecular dynamics-continuum hybrid computations: A tool for studying complex fluid flows. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[22] R. C. Reeder,et al. A Coarse Grain Model for Phospholipid Simulations , 2001 .
[23] Joseph H. Simmons,et al. A Concurrent multiscale finite difference time domain/molecular dynamics method for bridging an elastic continuum to an atomic system , 2003 .
[24] T. Darden,et al. A smooth particle mesh Ewald method , 1995 .
[25] Evan Evans,et al. Dynamic tension spectroscopy and strength of biomembranes. , 2003, Biophysical journal.
[26] Eirik Grude Flekkøy,et al. Hybrid model for combined particle and continuum dynamics , 2000 .
[27] Gregory A Voth,et al. A multiscale coarse-graining method for biomolecular systems. , 2005, The journal of physical chemistry. B.
[28] J. Henriksen,et al. Measurement of membrane elasticity by micro-pipette aspiration , 2004, The European physical journal. E, Soft matter.
[29] E. Sackmann,et al. Membrane bending energy concept of vesicle‐ and cell‐shapes and shape‐transitions , 1994, FEBS letters.
[30] Gregory A Voth,et al. Coupling field theory with mesoscopic dynamical simulations of multicomponent lipid bilayers. , 2004, Biophysical journal.
[31] Nicolas G. Hadjicostantinou. COMBINING ATOMISTIC AND CONTINUUM SIMULATIONS OF CONTACT-LINE MOTION , 1999 .
[32] P. Coveney,et al. Continuum-particle hybrid coupling for mass, momentum, and energy transfers in unsteady fluid flow. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[33] H. L. Scott,et al. Modeling the lipid component of membranes. , 2002, Current opinion in structural biology.
[34] Fisher,et al. Thermodynamic behavior of two-dimensional vesicles. , 1987, Physical review letters.
[35] L. Lin,et al. Dynamics of pinned membranes with application to protein diffusion on the surface of red blood cells. , 2004, Biophysical journal.
[36] E. Sackmann,et al. Collective membrane motions of high and low amplitude, studied by dynamic light scattering and micro-interferometry. , 1998, Faraday discussions.
[37] Reinhard Lipowsky,et al. Equilibrium structure and lateral stress distribution of amphiphilic bilayers from dissipative particle dynamics simulations , 2002 .
[38] M. Klein,et al. Computer simulation studies of biomembranes using a coarse grain model , 2002 .
[39] J. Henderson,et al. Statistical mechanics of inhomogeneous fluids , 1982, Proceedings of the Royal Society of London. A. Mathematical and Physical Sciences.
[40] G. Voth,et al. Calculating the bulk modulus for a lipid bilayer with nonequilibrium molecular dynamics simulation. , 2002, Biophysical journal.
[41] S. Safran. Statistical thermodynamics of soft surfaces , 2002 .
[42] E. Lindahl,et al. Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations. , 2000, Biophysical journal.
[43] B. Honig,et al. Classical electrostatics in biology and chemistry. , 1995, Science.
[44] Evan Evans,et al. Physical properties of surfactant bilayer membranes: thermal transitions, elasticity, rigidity, cohesion and colloidal interactions , 1987 .
[45] Leonor Saiz,et al. Computer simulation studies of model biological membranes. , 2002, Accounts of chemical research.
[46] E. Lindahl,et al. Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations , 2000 .
[47] S. Leibler,et al. Vanishing tension of fluctuating membranes , 1991 .
[48] M S Sansom,et al. Membrane simulations: bigger and better? , 2000, Current opinion in structural biology.
[49] Nelson,et al. Tethered surfaces: Statics and dynamics. , 1987, Physical review. A, General physics.
[50] Siewert J Marrink,et al. Molecular dynamics simulation of the spontaneous formation of a small DPPC vesicle in water in atomistic detail. , 2004, Journal of the American Chemical Society.
[51] F. Brochard,et al. Frequency spectrum of the flicker phenomenon in erythrocytes , 1975 .
[52] Alan E Mark,et al. Simulation of pore formation in lipid bilayers by mechanical stress and electric fields. , 2003, Journal of the American Chemical Society.
[53] Evans,et al. Entropy-driven tension and bending elasticity in condensed-fluid membranes. , 1990, Physical review letters.
[54] Samuel A. Safran,et al. Curvature elasticity of thin films , 1999 .
[55] Michael L. Klein,et al. Simulations of Phospholipids Using a Coarse Grain Model , 2001 .
[56] W Smith,et al. DL_POLY_2.0: a general-purpose parallel molecular dynamics simulation package. , 1996, Journal of molecular graphics.
[57] Nathan A. Baker,et al. Electrostatics of nanosystems: Application to microtubules and the ribosome , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[58] Reinhard Lipowsky,et al. The conformation of membranes , 1991, Nature.
[59] W. Helfrich. Elastic Properties of Lipid Bilayers: Theory and Possible Experiments , 1973, Zeitschrift fur Naturforschung. Teil C: Biochemie, Biophysik, Biologie, Virologie.
[60] Gregory A Voth,et al. Bridging microscopic and mesoscopic simulations of lipid bilayers. , 2002, Biophysical journal.
[61] Udo Seifert,et al. Configurations of fluid membranes and vesicles , 1997 .
[62] Gregory A Voth,et al. Interfacing molecular dynamics and macro-scale simulations for lipid bilayer vesicles. , 2002, Biophysical journal.
[63] H. C. Andersen,et al. Role of Repulsive Forces in Determining the Equilibrium Structure of Simple Liquids , 1971 .
[64] R. Benz,et al. Collective membrane motions in the mesoscopic range and their modulation by the binding of a monomolecular protein layer of streptavidin studied by dynamic light scattering. , 1999, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[65] Marcus Müller,et al. Coarse‐grained models and collective phenomena in membranes: Computer simulation of membrane fusion , 2003 .
[66] F. Brown. Regulation of protein mobility via thermal membrane undulations. , 2003, Biophysical journal.
[67] Watt W. Webb,et al. Thermal fluctuations of large quasi-spherical bimolecular phospholipid vesicles , 1984 .
[68] O. Farago. “Water-free” computer model for fluid bilayer membranes , 2003, cond-mat/0304203.
[69] Grace Brannigan,et al. Solvent-free simulations of fluid membrane bilayers. , 2004, The Journal of chemical physics.
[70] E. Evans,et al. Elasticity of ``Fuzzy'' Biomembranes , 1997 .