Radiomics for peripheral zone and intra-prostatic urethra segmentation in MR imaging

Abstract Automatic peripheral zone (PZ) and intra-prostatic urethra segmentation has clinical significance in analysis of prostate health management. It is interesting and much challenging task due to heterogeneous and inconsistent pixel intensities around prostate boundary and changes in a shape of the actual prostate capsule from patient to patient. The traditional methods of detection and delineation for glandular prostate gland using magnetic resonance imaging (MRI) involve expertise of radiologists and it is expensive in terms of time and accuracy. This paper proposes a novel technique for automate segmentation of PZ of prostate and intra-prostatic urethra. The technique is based on radiomics extraction using nonnegative matrix factorization (NMF) and segmentation using the self organizing maps (SOMs). The proposed framework is evaluated using 52 axial T2 weighted (T2w) MR images. The dice similarity coefficient (DSC) is calculated to measure the similarity between segmentation results and ground truth images. The proposed algorithm is compared with the conventional K-means (KM) clustering and fuzzy C-means (FCM) clustering approaches of the segmentation. The proposed scheme is shown to be superior based on subjective and objective evaluation analysis. The average percentage of DSC for PZ and intra-prostatic urethra segmentation is 87.33% and 85.55%, respectively using the proposed technique.

[1]  Michael W. Berry,et al.  Algorithms and applications for approximate nonnegative matrix factorization , 2007, Comput. Stat. Data Anal..

[2]  Tristan Barrett,et al.  The Emerging Role of MRI in Prostate Cancer Active Surveillance and Ongoing Challenges. , 2017, AJR. American journal of roentgenology.

[3]  Sanjay Talbar,et al.  Automatic lung field segmentation using novel feature extraction and unsupervised learning , 2017, 2017 International Conference on Innovations in Electronics, Signal Processing and Communication (IESC).

[4]  Zhenfeng Zhang,et al.  Superpixel-Based Segmentation for 3D Prostate MR Images , 2016, IEEE Transactions on Medical Imaging.

[5]  Hui-Xiong Xu,et al.  Comparison between Ultrasound Guided Transperineal and Transrectal Prostate Biopsy: A Prospective, Randomized, and Controlled Trial , 2015, Scientific Reports.

[6]  A. Oto,et al.  Magnetic resonance imaging of benign prostatic hyperplasia. , 2016, Diagnostic and interventional radiology.

[7]  Abdol Hamid Pilevar,et al.  Automatic Segmentation of Medical Images Using Fuzzy c-Means and the Genetic Algorithm , 2013 .

[8]  A. Evans,et al.  Prostate cancer detection with multi‐parametric MRI: Logistic regression analysis of quantitative T2, diffusion‐weighted imaging, and dynamic contrast‐enhanced MRI , 2009, Journal of magnetic resonance imaging : JMRI.

[9]  Bohyun Kim,et al.  MR imaging of the male and female urethra. , 2001, Radiographics : a review publication of the Radiological Society of North America, Inc.

[10]  Jia-Ching Wang,et al.  NMF-based image segmentation , 2016, 2016 IEEE International Conference on Consumer Electronics-Taiwan (ICCE-TW).

[11]  J. Brooks,et al.  Biologic differences between peripheral and transition zone prostate cancer , 2015, The Prostate.

[12]  H. Hricak,et al.  Normal central zone of the prostate and central zone involvement by prostate cancer: clinical and MR imaging implications. , 2012, Radiology.

[13]  Alexandre Pelzer,et al.  Value of magnetic resonance imaging in prostate cancer diagnosis , 2007, World Journal of Urology.

[14]  Gilles Pagès,et al.  Theoretical aspects of the SOM algorithm , 1998, Neurocomputing.

[15]  Zexuan Ji,et al.  A modified possibilistic fuzzy c-means clustering algorithm for bias field estimation and segmentation of brain MR image , 2011, Comput. Medical Imaging Graph..

[16]  Giancarlo Mauri,et al.  Automated Prostate Gland Segmentation Based on an Unsupervised Fuzzy C-Means Clustering Technique Using Multispectral T1w and T2w MR Imaging , 2017, Inf..

[17]  Ron Kikinis,et al.  Statistical validation of image segmentation quality based on a spatial overlap index. , 2004, Academic radiology.

[18]  Ayman El-Baz,et al.  A Novel NMF Guided Level-set for DWI Prostate Segmentation , 2014 .

[19]  Timothy F. Cootes,et al.  Active Shape Models-Their Training and Application , 1995, Comput. Vis. Image Underst..

[20]  Samuel Kaski,et al.  Self organization of a massive document collection , 2000, IEEE Trans. Neural Networks Learn. Syst..

[21]  K. L. Moore,et al.  Clinically Oriented Anatomy , 1985 .

[22]  William Wells,et al.  Detection of prostate cancer by integration of line-scan diffusion, T2-mapping and T2-weighted magnetic resonance imaging; a multichannel statistical classifier. , 2003, Medical physics.

[23]  O. D. Brutto Neurocysticercosis: A Review , 2012 .

[24]  Tzong-Jer Chen,et al.  Fuzzy c-means clustering with spatial information for image segmentation , 2006, Comput. Medical Imaging Graph..

[25]  Wing-Kin Ma,et al.  Nonnegative Matrix Factorization for Signal and Data Analytics: Identifiability, Algorithms, and Applications , 2018, IEEE Signal Processing Magazine.

[26]  B. Hadaschik,et al.  Transperineal vs. transrectal biopsy in MRI targeting , 2017, Translational andrology and urology.

[27]  Nico Karssemeijer,et al.  Computer-Aided Detection of Prostate Cancer in MRI , 2014, IEEE Transactions on Medical Imaging.

[28]  Demetri Terzopoulos,et al.  Snakes: Active contour models , 2004, International Journal of Computer Vision.

[29]  Sven Perner,et al.  The peripheral zone of the prostate is more prone to tumor development than the transitional zone: is the ETS family the key? , 2011, Molecular medicine reports.

[30]  Mohamed Abou El-Ghar,et al.  A new NMF-autoencoder based CAD system for early diagnosis of prostate cancer , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[31]  Katarzyna J Macura,et al.  Synopsis of the PI-RADS v2 Guidelines for Multiparametric Prostate Magnetic Resonance Imaging and Recommendations for Use. , 2016, European urology.

[32]  Oscar Acosta,et al.  Multi-atlas-based segmentation of prostatic urethra from planning CT imaging to quantify dose distribution in prostate cancer radiotherapy. , 2017, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

[33]  R G Aarnink,et al.  Edge detection in prostatic ultrasound images using integrated edge maps. , 1998, Ultrasonics.

[34]  Gabriele Steidl,et al.  A new fuzzy c-means method with total variation regularization for segmentation of images with noisy and incomplete data , 2012, Pattern Recognit..

[35]  P Tiwari,et al.  Multimodal wavelet embedding representation for data combination (MaWERiC): integrating magnetic resonance imaging and spectroscopy for prostate cancer detection , 2012, NMR in biomedicine.

[36]  Yambem Jina Chanu,et al.  Image Segmentation Using K -means Clustering Algorithm and Subtractive Clustering Algorithm , 2015 .

[37]  D L McCullough,et al.  Systematic 5 region prostate biopsy is superior to sextant method for diagnosing carcinoma of the prostate. , 1997, The Journal of urology.

[38]  Nigel Borley,et al.  Prostate cancer: diagnosis and staging. , 2009, Asian journal of andrology.

[39]  J. Barentsz,et al.  Multiparametric magnetic resonance imaging of the prostate: current concepts* , 2014, Radiologia brasileira.

[40]  Vijayakumar Chinnadurai,et al.  Segmentation and grading of brain tumors on apparent diffusion coefficient images using self-organizing maps , 2007, Comput. Medical Imaging Graph..

[41]  Andrei Doncescu,et al.  Non Negative Matrix Factorization Clustering Capabilities; Application on Multivariate Image Segmentation , 2009, 2009 International Conference on Complex, Intelligent and Software Intensive Systems.

[42]  W. De Neve,et al.  Magnetic resonance imaging anatomy of the prostate and periprostatic area: a guide for radiotherapists. , 2005, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

[43]  N. Lawrentschuk,et al.  Sepsis and ‘superbugs’: should we favour the transperineal over the transrectal approach for prostate biopsy? , 2014, BJU international.

[44]  Dongxiang Chi,et al.  Self-Organizing Map-Based Color Image Segmentation with k-Means Clustering and Saliency Map , 2011 .

[45]  Carole Lartizien,et al.  Computer-aided diagnosis of prostate cancer in the peripheral zone using multiparametric MRI , 2012, Physics in medicine and biology.

[46]  T. Stamey,et al.  Ultrasound guided transrectal core biopsies of the palpably abnormal prostate. , 1989, The Journal of urology.

[47]  Yongmin Kim,et al.  Edge-guided boundary delineation in prostate ultrasound images , 2000, IEEE Transactions on Medical Imaging.

[48]  Samir S Taneja,et al.  Imaging in the diagnosis and management of prostate cancer. , 2004, Reviews in urology.

[49]  P. Scardino,et al.  Anatomy of the prostate and distribution of early prostate cancer. , 1995, Seminars in surgical oncology.

[50]  J. S. Prater,et al.  Segmenting ultrasound images of the prostate using neural networks. , 1992, Ultrasonic imaging.

[51]  Akshay Dudhane,et al.  Interstitial Lung Disease Classification Using Feed Forward Neural Networks , 2017 .

[52]  R. Lauffer,et al.  Gadolinium(III) Chelates as MRI Contrast Agents: Structure, Dynamics, and Applications. , 1999, Chemical reviews.

[53]  Aaron Fenster,et al.  Dual optimization based prostate zonal segmentation in 3D MR images , 2014, Medical Image Anal..

[54]  Marcel Brun,et al.  Clustering Algorithms: On Learning, Validation, Performance, and Applications to Genomics , 2009, Current genomics.

[55]  Sadhna Verma,et al.  Anatomic Imaging of the Prostate , 2014, BioMed research international.

[56]  Baba C. Vemuri,et al.  Nonnegative Factorization of Diffusion Tensor Images and Its Applications , 2011, IPMI.

[57]  Chih-Jen Lin,et al.  Projected Gradient Methods for Nonnegative Matrix Factorization , 2007, Neural Computation.

[58]  Masoom A. Haider,et al.  Multiparametric-MRI in diagnosis of prostate cancer , 2015, Indian journal of urology : IJU : journal of the Urological Society of India.

[59]  Esa Alhoniemi,et al.  Clustering of the self-organizing map , 2000, IEEE Trans. Neural Networks Learn. Syst..

[60]  C. Mathers,et al.  Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008 , 2010, International journal of cancer.