In the Light of the Environment: Evolution Through Biogrammars Not Programmers
暂无分享,去创建一个
[1] Subrena E. Smith. Is Evolutionary Psychology Possible? , 2020 .
[2] R. Iyengar,et al. Signaling Networks The Origins of Cellular Multitasking , 2000, Cell.
[3] P. Ball. Cellular memory hints at the origins of intelligence , 2008, Nature.
[4] Michael Gribskov,et al. Encyclopedia of bioinformatics and computational biology , 2019 .
[5] Stuart A Newman,et al. Dynamical patterning modules: a "pattern language" for development and evolution of multicellular form. , 2009, The International journal of developmental biology.
[6] F. Boschetti,et al. Visions of Evolution: Self-organization Proposes What Natural Selection Disposes , 2008 .
[7] C. H. Waddington. Paradigm for an Evolutionary Process , 2008 .
[8] Wim Hordijk,et al. Autocatalytic networks in biology: structural theory and algorithms , 2019, Journal of the Royal Society Interface.
[9] G. Müller. Evo–devo: extending the evolutionary synthesis , 2007, Nature Reviews Genetics.
[10] M. Duijn. Phylogenetic origins of biological cognition: convergent patterns in the early evolution of learning. , 2017 .
[11] A. Agrawal,et al. Transgenerational induction of defences in animals and plants , 1999, Nature.
[12] George C. Williams,et al. Adaptation and Natural Selection , 2018 .
[13] Phil Husbands,et al. Evolution of Associative Learning in Chemical Networks , 2012, PLoS Comput. Biol..
[14] Eörs Szathmáry,et al. The Major Transitions in Evolution , 1997 .
[15] M. Tomasello. The ultra-social animal , 2014, European journal of social psychology.
[16] N Williams. Mendel's demon , 2001, Current Biology.
[17] I. Cohen. Updating Darwin: Information and entropy drive the evolution of life , 2016, F1000Research.
[18] Frank J Bruggeman,et al. Taking chances and making mistakes: non-genetic phenotypic heterogeneity and its consequences for surviving in dynamic environments , 2017, Journal of The Royal Society Interface.
[19] Andrew K. Lampinen,et al. Analogies Emerge from Learning Dyamics in Neural Networks , 2017, CogSci.
[20] Nelson Spruston,et al. Dendritic integration: 60 years of progress , 2015, Nature Neuroscience.
[21] G. Lahav,et al. Encoding and Decoding Cellular Information through Signaling Dynamics , 2013, Cell.
[22] Patricia A. Lane,et al. The road before us: Have we come to a “fork in the road” in defining complexity? , 2017, Ecological Complexity.
[23] R. Lickliter. The origins of variation: evolutionary insights from developmental science. , 2013, Advances in child development and behavior.
[24] P. Godfrey‐Smith. Environmental complexity and the evolution of cognition. , 2002 .
[25] Eric Smith,et al. The Origin and Nature of Life on Earth: The Emergence of the Fourth Geosphere , 2016 .
[26] S. Krishna,et al. Metabolic constraints drive self-organization of specialized cell groups , 2019, bioRxiv.
[27] D. Schluter,et al. Does evolutionary theory need a rethink? , 2014, Nature.
[28] R. Dawkins. The Extended Phenotype , 1982 .
[29] Andreas Wagner,et al. Alternative routes and mutational robustness in complex regulatory networks , 2007, Biosyst..
[30] W. Callebaut. Scholastic Temptations in the Philosophy of Biology , 2013, Biological Theory.
[31] D. Noble. Dance to the Tune of Life: Biological Relativity , 2017 .
[32] O. Vasileva,et al. (Re)Introducing Vygotsky’s Thought: From Historical Overview to Contemporary Psychology , 2019, Front. Psychol..
[33] H. Vries,et al. Species and Varieties, Their Origin by Mutation , 1905 .
[34] Roland Memisevic,et al. Modeling Deep Temporal Dependencies with Recurrent "Grammar Cells" , 2014, NIPS.
[35] S. Newman. Inherency of Form and Function in Animal Development and Evolution , 2019, Front. Physiol..
[36] H. Jane Brockmann,et al. The selfish gene (2nd edn) , 1990 .
[37] D. Pelta,et al. Attractor Metabolic Networks , 2013, PloS one.
[38] T. Cavalier-smith. Origin of animal multicellularity: precursors, causes, consequences—the choanoflagellate/sponge transition, neurogenesis and the Cambrian explosion , 2017, Philosophical Transactions of the Royal Society B: Biological Sciences.
[39] Madhusudan Natarajan,et al. A global analysis of cross-talk in a mammalian cellular signalling network , 2006, Nature Cell Biology.
[40] M. Frederix,et al. Quorum sensing: regulating the regulators. , 2011, Advances in microbial physiology.
[41] Richard A Young,et al. Models of human core transcriptional regulatory circuitries , 2016, Genome research.
[42] Eric Smith,et al. The compositional and evolutionary logic of metabolism , 2012, Physical biology.
[43] John Maynard Smith,et al. The Concept of Information in Biology , 2000, Philosophy of Science.
[44] N. Bairagi,et al. Complexity in a prey-predator model with prey refuge and diffusion , 2019, Ecological Complexity.
[45] D. Green,et al. Interactions matter—complexity in landscapes and ecosystems , 2005 .
[46] Andreas Wagner,et al. Arrival of the Fittest: Solving Evolution's Greatest Puzzle , 2014 .
[47] V. Laudet,et al. Circadian clock and microarrays: mammalian genome gets rhythm. , 2002, Trends in genetics : TIG.
[48] R. Poulin,et al. Evolution of parasite life history traits: myths and reality. , 1995, Parasitology today.
[49] Rob Phillips,et al. Combinatorial Control through Allostery , 2018, bioRxiv.
[50] Karl Verfaillie,et al. Perception of biological motion: A stimulus set of human point-light actions , 2004, Behavior research methods, instruments, & computers : a journal of the Psychonomic Society, Inc.
[51] Thomas Pfeiffer,et al. Evolution under Fluctuating Environments Explains Observed Robustness in Metabolic Networks , 2010, PLoS Comput. Biol..
[52] Maarten L. Wijnants,et al. A Review of Theoretical Perspectives in Cognitive Science on the Presence of Scaling in Coordinated Physiological and Cognitive Processes , 2014 .
[53] C. Waddington. The strategy of the genes , 1957 .
[54] M. Jaskólski,et al. Circadian oscillator proteins across the kingdoms of life: structural aspects , 2019, BMC Biology.
[55] Saeed Tavazoie,et al. Predictive Behavior Within Microbial Genetic Networks , 2008, Science.
[56] D. Segrè,et al. Modern views of ancient metabolic networks , 2018 .
[57] Boris N. Kholodenko,et al. Signalling ballet in space and time , 2010, Nature Reviews Molecular Cell Biology.
[58] Kole T. Roybal,et al. Spatiotemporal Patterning During T Cell Activation Is Highly Diverse , 2009, Science Signaling.
[59] Yuval Hart,et al. The utility of paradoxical components in biological circuits. , 2013, Molecular cell.
[60] Robin I. M. Dunbar,et al. The social brain hypothesis and its implications for social evolution , 2009, Annals of human biology.
[61] Karl J. Friston,et al. Frontiers in Neuroinformatics , 2022 .
[62] Martin S. Krejca,et al. Surfing on the seascape: Adaptation in a changing environment , 2019, Evolution; international journal of organic evolution.
[63] Samuel A. Nastase,et al. Direct Fit to Nature: An Evolutionary Perspective on Biological and Artificial Neural Networks , 2019, Neuron.
[64] Hector Zenil,et al. Slime mould: The fundamental mechanisms of biological cognition , 2017, Biosyst..
[65] P. Lyon. The cognitive cell: bacterial behavior reconsidered , 2015, Front. Microbiol..
[66] M. Morales,et al. Evidence of conditioned behavior in amoebae , 2019, Nature Communications.
[67] H. Berg,et al. A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli , 2010, Molecular systems biology.
[68] A. Lotto,et al. Speech perception as categorization , 2010, Attention, perception & psychophysics.
[69] H. Nijhout,et al. Using mathematical models to understand metabolism, genes, and disease , 2015, BMC Biology.
[70] A. Annila,et al. Genes without prominence: a reappraisal of the foundations of biology , 2014, Journal of The Royal Society Interface.
[71] David J. Reiss,et al. Niche adaptation by expansion and reprogramming of general transcription factors , 2011, Molecular systems biology.
[72] Steven Pinker,et al. The Blank Slate , 2006 .
[73] J. S. Parkinson,et al. Signaling and sensory adaptation in Escherichia coli chemoreceptors: 2015 update. , 2015, Trends in microbiology.
[74] Jonathan Timmis,et al. Computational Models of the NF-KB Signalling Pathway , 2014, Comput..
[75] H. Pahl. Activators and target genes of Rel/NF-κB transcription factors , 1999, Oncogene.
[76] A. Annila,et al. Discourse on order vs. disorder , 2016, Communicative & integrative biology.
[77] A. Koseska,et al. Cell signaling as a cognitive process , 2017, The EMBO journal.
[78] M. Babu,et al. Reconfiguring Regulation , 2012, Science.
[79] Yitzhak Pilpel,et al. A mathematical model for adaptive prediction of environmental changes by microorganisms , 2011, Proceedings of the National Academy of Sciences.
[80] S. Sultan. One contribution of 20 to a theme issue ‘ New trends in evolutionary biology : biological , philosophical and social science perspectives , 2017 .
[81] C. Arenas-Mena. The origins of developmental gene regulation , 2017, Evolution & development.
[82] K. Laland,et al. Darwin in Mind: New Opportunities for Evolutionary Psychology , 2011, PLoS biology.
[83] Michael Levin,et al. On Having No Head: Cognition throughout Biological Systems , 2016, Front. Psychol..
[84] T. Dobzhansky. Nothing in Biology Makes Sense Except in the Light of Evolution , 1973 .
[85] D. Buss,et al. Psychological Barriers to Evolutionary Psychology: Ideological Bias and Coalitional Adaptations , 2018, Archives of Scientific Psychology.
[86] Raffaele Giancarlo,et al. Network Centralities and Node Ranking , 2019, Encyclopedia of Bioinformatics and Computational Biology.
[87] C. Darwin. On the Origin of Species by Means of Natural Selection: Or, The Preservation of Favoured Races in the Struggle for Life , 2019 .
[88] E. Olson,et al. MEF2: a central regulator of diverse developmental programs , 2007, Development.
[89] Juhan Kim,et al. Three serendipitous pathways in E. coli can bypass a block in pyridoxal-5′-phosphate synthesis , 2010, Molecular systems biology.
[90] M. Blumberg. Development evolving: the origins and meanings of instinct. , 2017, Wiley interdisciplinary reviews. Cognitive science.
[91] J. Coon,et al. Metabolic Remodeling during Biofilm Development of Bacillus subtilis , 2019, mBio.
[92] A. Rapoport,et al. An Optimal Strategy of Evolution , 1974, The Quarterly Review of Biology.
[93] E. Danchin,et al. The Missing Response to Selection in the Wild , 2018, Trends in ecology & evolution.
[94] P. Corning. Synergistic Selection:How Cooperation Has Shaped Evolution and the Rise of Humankind , 2017 .
[95] Eva Jablonka,et al. Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution , 2009, The Quarterly Review of Biology.
[96] Kim Sterelny,et al. The Major Transitions in Evolution Revisited , 2011 .
[97] H. C. Plotkin,et al. Learning, Change, and Evolution: An Enquiry into the Teleonomy of Learning , 1979 .
[98] A. Barwich,et al. A Critique of Olfactory Objects , 2019, Front. Psychol..
[99] K. Meyer,et al. Adaptive and Selective Seed Abortion Reveals Complex Conditional Decision Making in Plants , 2014, The American Naturalist.
[100] S. Bromley,et al. Orchestrating the orchestrators: chemokines in control of T cell traffic , 2008, Nature Immunology.
[101] A. Becker,et al. Phenotypic Heterogeneity in Bacterial Quorum Sensing Systems. , 2019, Journal of molecular biology.
[102] Michael A. Trestman. The Cambrian Explosion and the Origins of Embodied Cognition , 2013 .
[103] M. Ralser. An appeal to magic? The discovery of a non-enzymatic metabolism and its role in the origins of life , 2018, The Biochemical journal.
[104] W. N. Schoenfeld,et al. Principles of Psychology , 2007 .
[105] C. Darwin. The Descent of Man and Selection in Relation to Sex: INDEX , 1871 .
[106] R. Medzhitov,et al. Inflammation: Memory beyond immunity , 2017, Nature.