EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon

[1]  J. Vogel,et al.  Agrobacterium-mediated transformation and inbred line development in the model grass Brachypodium distachyon , 2006, Plant Cell, Tissue and Organ Culture.

[2]  K. Vogel,et al.  Analysis of expressed sequence tags and the identification of associated short tandem repeats in switchgrass , 2005, Theoretical and Applied Genetics.

[3]  I. Leitch,et al.  Nuclear DNA amounts in angiosperms: progress, problems and prospects. , 2005, Annals of botany.

[4]  M. Folling,et al.  A rapid and efficient transformation protocol for the grass Brachypodium distachyon , 2005, Plant Cell Reports.

[5]  Miftahudin,et al.  Development of an Expressed Sequence Tag (EST) Resource for Wheat (Triticum aestivum L.) , 2004, Genetics.

[6]  R. Olmstead,et al.  A survey of tricolpate (eudicot) phylogenetic relationships. , 2004, American journal of botany.

[7]  R. Olmstead,et al.  Phylogenetic reconstruction of the genusBrachypodium P. Beauv. (Poaceae) from combined sequences of chloroplastndhF gene and nuclear ITS , 2000, Plant Systematics and Evolution.

[8]  J. Draper,et al.  Ribosomal DNA variation and its phylogenetic implication in the genusBrachypodium (Poaceae) , 2004, Plant Systematics and Evolution.

[9]  Richard A Dixon,et al.  Improved forage digestibility of tall fescue (Festuca arundinacea) by transgenic down-regulation of cinnamyl alcohol dehydrogenase. , 2003, Plant biotechnology journal.

[10]  C. Chapple,et al.  Rewriting the lignin roadmap. , 2002, Current opinion in plant biology.

[11]  Brandon S. Gaut,et al.  Evolutionary dynamics of grass genomes , 2002 .

[12]  J. Draper,et al.  Brachypodium distachyon. A new model system for functional genomics in grasses. , 2001, Plant physiology.

[13]  K. H. Wolfe Yesterday's polyploids and the mystery of diploidization , 2001, Nature Reviews Genetics.

[14]  E. Kellogg,et al.  Evolutionary history of the grasses. , 2001, Plant physiology.

[15]  P. Green,et al.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.

[16]  P Green,et al.  Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.

[17]  Ronald L. Phillips,et al.  Relationships of cereal crops and other grasses , 1998 .

[18]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[19]  J. Draper,et al.  Molecular phylogeny of the grass genus Brachypodium P. Beauv. based on RFLP and RAPD analysis , 1995 .

[20]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[21]  K. H. Asay,et al.  Phylogenetic relationships of 10 grass species: an assessment of phylogenetic utility of the internal transcribed spacer region in nuclear ribosomal DNA in monocots. , 1994, Genome.

[22]  A. Kerlavage,et al.  Complementary DNA sequencing: expressed sequence tags and human genome project , 1991, Science.