Meta-analysis of estrogen response in MCF-7 distinguishes early target genes involved in signaling and cell proliferation from later target genes involved in cell cycle and DNA repair
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[1] Leighton J. Core,et al. A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells , 2011, Cell.
[2] Sangsoo Kim,et al. Combining multiple microarray studies and modeling interstudy variation , 2003, ISMB.
[3] A. Fabiato,et al. Anonymity of reviewers , 1994 .
[4] Michael Karin,et al. NF-kappaB and cancer-identifying targets and mechanisms. , 2008, Current opinion in genetics & development.
[5] R. Koos,et al. Inhibition of oxygen-induced hypoxia-inducible factor-1alpha degradation unmasks estradiol induction of vascular endothelial growth factor expression in ECC-1 cancer cells in vitro. , 2009, Endocrinology.
[6] Aleksandra M. Michalowska,et al. Identification of an integrated SV40 T/t-antigen cancer signature in aggressive human breast, prostate, and lung carcinomas with poor prognosis. , 2007, Cancer research.
[7] S. Hilsenbeck,et al. Global gene expression analysis of estrogen receptor transcription factor cross talk in breast cancer: identification of estrogen-induced/activator protein-1-dependent genes. , 2005, Molecular endocrinology.
[8] E. Cheung,et al. Genomic analyses of hormone signaling and gene regulation. , 2010, Annual review of physiology.
[9] F. Stossi,et al. Whole-Genome Cartography of Estrogen Receptor α Binding Sites , 2007, PLoS genetics.
[10] Chin-Yo Lin,et al. Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome. , 2006, Cancer research.
[11] Barry Komm,et al. Profiling of estrogen up- and down-regulated gene expression in human breast cancer cells: insights into gene networks and pathways underlying estrogenic control of proliferation and cell phenotype. , 2003, Endocrinology.
[12] Dennis B. Troup,et al. NCBI GEO: mining tens of millions of expression profiles—database and tools update , 2006, Nucleic Acids Res..
[13] John H. White,et al. Mechanisms of primary and secondary estrogen target gene regulation in breast cancer cells , 2007, Nucleic acids research.
[14] H. Stunnenberg,et al. Genomic actions of estrogen receptor alpha: what are the targets and how are they regulated? , 2009, Endocrine-related cancer.
[15] H. Stunnenberg,et al. ChIP‐Seq of ERα and RNA polymerase II defines genes differentially responding to ligands , 2009, The EMBO journal.
[16] W. Kraus,et al. A Global View of Transcriptional Regulation by Nuclear Receptors: Gene Expression, Factor Localization, and DNA Sequence Analysis , 2008, Nuclear receptor signaling.
[17] M. Hendrix,et al. IRF6 in development and disease: A mediator of quiescence and differentiation , 2008, Cell cycle.
[18] E. Ariazi,et al. ERE-independent ERα target genes differentially expressed in human breast tumors , 2005, Molecular and Cellular Endocrinology.
[19] J. Frasor,et al. Impact of estrogen receptor beta on gene networks regulated by estrogen receptor alpha in breast cancer cells. , 2006, Endocrinology.
[20] Barry Komm,et al. Estrogen Receptors (cid:1) and (cid:2) as Determinants of Gene Expression: Influence of Ligand, Dose, and Chromatin Binding , 2008 .
[22] Rainer Breitling,et al. RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis , 2006, Bioinform..
[23] Lorenzo Ferraro,et al. Estrogen receptor alpha controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs. , 2010, The American journal of pathology.
[24] Rainer Breitling,et al. Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments , 2004, FEBS letters.
[25] Rafael A Irizarry,et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.
[26] J. Frasor,et al. Impact of Estrogen Receptor β on Gene Networks Regulated by Estrogen Receptor α in Breast Cancer Cells , 2006 .
[27] Karin Kovar,et al. Promoter library designed for fine-tuned gene expression in Pichia pastoris , 2008, Nucleic acids research.
[28] Arul M Chinnaiyan,et al. Genes regulated by estrogen in breast tumor cells in vitro are similarly regulated in vivo in tumor xenografts and human breast tumors , 2006, Genome Biology.
[29] Rainer Breitling,et al. A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments , 2008, Bioinform..
[30] John Quackenbush,et al. Multiple-laboratory comparison of microarray platforms , 2005, Nature Methods.
[31] E. Ariazi,et al. ERE-independent ERalpha target genes differentially expressed in human breast tumors. , 2005, Molecular and cellular endocrinology.
[32] Rafael A. Irizarry,et al. A Model-Based Background Adjustment for Oligonucleotide Expression Arrays , 2004 .
[33] B. Katzenellenbogen. Estrogen receptors: bioactivities and interactions with cell signaling pathways. , 1996, Biology of reproduction.
[34] Neil J McKenna,et al. GEMS (Gene Expression MetaSignatures), a Web resource for querying meta-analysis of expression microarray datasets: 17beta-estradiol in MCF-7 cells. , 2009, Cancer research.
[35] Giancarlo Mauri,et al. A comparison of machine learning techniques for survival prediction in breast cancer , 2011, BioData Mining.
[36] S. Safe,et al. Transcriptional activation of transforming growth factor alpha by estradiol: requirement for both a GC-rich site and an estrogen response element half-site. , 2000, Journal of molecular endocrinology.
[37] S. Badve,et al. NF-κB represses E-cadherin expression and enhances epithelial to mesenchymal transition of mammary epithelial cells: potential involvement of ZEB-1 and ZEB-2 , 2007, Oncogene.
[38] Allen Chong,et al. Discovery of estrogen receptor α target genes and response elements in breast tumor cells , 2004, Genome Biology.
[39] Clifford A. Meyer,et al. Genome-wide analysis of estrogen receptor binding sites , 2006, Nature Genetics.
[40] D. Kalaitzidis,et al. Transcription factor cross-talk: the estrogen receptor and NF-kappaB. , 2005, Trends in endocrinology and metabolism: TEM.
[41] Marc E. Lippman,et al. GREB1 is a critical regulator of hormone dependent breast cancer growth , 2005, Breast Cancer Research and Treatment.
[42] J. Gustafsson,et al. Estrogen receptor and aryl hydrocarbon receptor signaling pathways , 2006, Nuclear receptor signaling.
[43] A. Nardulli,et al. Sp1 binding sites and an estrogen response element half-site are involved in regulation of the human progesterone receptor A promoter. , 2000, Molecular endocrinology.
[44] T. Kroll,et al. Gene expression profiling reveals effects of Cimicifuga racemosa (L.) NUTT. (black cohosh) on the estrogen receptor positive human breast cancer cell line MCF-7 , 2007, BMC pharmacology.
[45] D. Kalaitzidis,et al. Transcription factor cross-talk: the estrogen receptor and NF-κB , 2005, Trends in Endocrinology & Metabolism.