Drugging MYCN oncogenic through the interface

MYCN is a major driver for the childhood cancer, neuroblastoma, however, there are no inhibitors of this target. Enhanced MYCN protein stability is a key component of MYCN oncogenesis and is maintained by multiple feedforward expression loops involving MYCN transactivation target genes. Here we reveal the oncogenic role of a novel MYCN target and binding protein, proliferation-associated 2AG4 (PA2G4). ChIP studies demonstrated that MYCN occupies the PA2G4 gene promoter, stimulating transcription. Direct binding of PA2G4 to MYCN protein blocked proteolysis of MYCN, and enhanced colony formation in a MYCN-dependent manner . Using molecular modelling, surface plasmon resonance and mutagenesis studies, we mapped the MYCN-PA2G4 interaction site to a fourteen amino acid MYCN sequence and a surface crevice of PA2G4. Competitive chemical inhibition of the MYCN-PA2G4 protein-protein interface had potent inhibitory effects on neuroblastoma tumorigenesis in vivo. Treated tumors showed reduced levels of both MYCN and PA2G4. Our findings demonstrate a critical role for PA2G4 as cofactor in MYCN-driven neuroblastoma and highlight competitive inhibition of the PA2G4-MYCN protein binding as a novel therapeutic strategy in the disease. Significance: Competitive chemical inhibition of the PA2G4-MYCN protein interface provides a basis for drug design of small molecules targeting MYC and MYCN binding partners in malignancies driven by MYC family oncoproteins. proteins and structural biologic approaches we define a PA2G4-MYCN protein-protein interface which can be inhibited by a known PA2G4-binding compound, with significant anti-tumor effects in vitro and in vivo . Furthermore, we show that PA2G4 expression levels in neuroblastoma patient tumor tissues correlated with MYCN levels and poor prognosis.

[1]  Giovanna Ambrosini,et al.  PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix , 2018, Bioinform..

[2]  Donald R. Polaski,et al.  Enhancer invasion shapes MYCN-dependent transcriptional amplification in neuroblastoma , 2018, Nature Genetics.

[3]  J. Mao,et al.  Distinct Interactions of EBP1 Isoforms with FBXW7 Elicits Different Functions in Cancer. , 2017, Cancer research.

[4]  Hu Li,et al.  Critical Role for GAB2 in Neuroblastoma Pathogenesis through the Promotion of SHP2/MYCN Cooperation. , 2017, Cell reports.

[5]  S. Moody,et al.  Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. , 2017, Developmental biology.

[6]  M. Eilers,et al.  Structural basis of N-Myc binding by Aurora-A and its destabilization by kinase inhibitors , 2016, Proceedings of the National Academy of Sciences.

[7]  G. Qing,et al.  Polo-like Kinase-1 Regulates Myc Stabilization and Activates a Feedforward Circuit Promoting Tumor Cell Survival. , 2016, Molecular cell.

[8]  A. Califano,et al.  HAUSP deubiquitinated and stabilizes N-Myc in neuroblastoma , 2016, Nature Medicine.

[9]  D. Goldstein,et al.  A Rationally Optimized Nanoparticle System for the Delivery of RNA Interference Therapeutics into Pancreatic Tumors in Vivo. , 2016, Biomacromolecules.

[10]  B. Carver Defining and Targeting the Oncogenic Drivers of Neuroendocrine Prostate Cancer. , 2016, Cancer cell.

[11]  F. Speleman,et al.  Therapeutic targeting of the MYC signal by inhibition of histone chaperone FACT in neuroblastoma , 2015, Science Translational Medicine.

[12]  Dongmei Zhang,et al.  ErbB3 binding protein 1 (EBP1) participates in the regulation of intestinal inflammation via mediating Akt signaling pathway. , 2015, Molecular immunology.

[13]  Jee-Yin Ahn,et al.  P42 Ebp1 functions as a tumor suppressor in non-small cell lung cancer , 2015, BMB reports.

[14]  Erin F. Simonds,et al.  Drugging MYCN through an allosteric transition in Aurora kinase A. , 2014, Cancer cell.

[15]  L. Mao,et al.  Ebp1 activates podoplanin expression and contributes to oral tumorigenesis , 2014, Oncogene.

[16]  S. Lowe,et al.  A common functional consequence of tumor-derived mutations within c-MYC , 2014, Oncogene.

[17]  A. Biankin,et al.  Histone deacetylase 5 blocks neuroblastoma cell differentiation by interacting with N-Myc , 2014, Oncogene.

[18]  A. Biankin,et al.  Histone deacetylase 2 and N-Myc reduce p53 protein phosphorylation at serine 46 by repressing gene transcription of tumor protein 53-induced nuclear protein 1 , 2014, Oncotarget.

[19]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[20]  Jerome Wielens,et al.  Oncogenic protein interfaces: small molecules, big challenges , 2014, Nature Reviews Cancer.

[21]  W. Weiss,et al.  The prenatal origins of cancer , 2014, Nature Reviews Cancer.

[22]  H. R. Ko,et al.  P42 Ebp1 regulates the proteasomal degradation of the p85 regulatory subunit of PI3K by recruiting a chaperone-E3 ligase complex HSP70/CHIP , 2014, Cell Death and Disease.

[23]  C. Marcelle,et al.  ErbB3 binding protein-1 (Ebp1) controls proliferation and myogenic differentiation of muscle stem cells. , 2014, Developmental biology.

[24]  J. Maris,et al.  Children's Oncology Group's 2013 blueprint for research: Neuroblastoma , 2013, Pediatric blood & cancer.

[25]  F. Westermann,et al.  Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma , 2013, Cell Death and Disease.

[26]  Matthew S. Tremblay,et al.  Small-molecule inducer of β cell proliferation identified by high-throughput screening. , 2013, Journal of the American Chemical Society.

[27]  A. Biankin,et al.  The histone deacetylase SIRT2 stabilizes Myc oncoproteins , 2012, Cell Death and Differentiation.

[28]  J. Maris,et al.  Pediatric Phase I Trial and Pharmacokinetic Study of MLN8237, an Investigational Oral Selective Small-Molecule Inhibitor of Aurora Kinase A: A Children's Oncology Group Phase I Consortium Study , 2012, Clinical Cancer Research.

[29]  D. Neuberg,et al.  Activated ALK collaborates with MYCN in neuroblastoma pathogenesis. , 2012, Cancer cell.

[30]  Jee-Yin Ahn,et al.  Long isoform of ErbB3 binding protein, p48, mediates protein kinase B/Akt-dependent HDM2 stabilization and nuclear localization. , 2012, Experimental cell research.

[31]  A. Biankin,et al.  SIRT1 Promotes N-Myc Oncogenesis through a Positive Feedback Loop Involving the Effects of MKP3 and ERK on N-Myc Protein Stability , 2011, PLoS genetics.

[32]  D. Nam,et al.  Negative regulation of p53 by the long isoform of ErbB3 binding protein Ebp1 in brain tumors. , 2010, Cancer research.

[33]  F. Stossi,et al.  Transcriptional upregulation of histone deacetylase 2 promotes Myc-induced oncogenic effects , 2010, Oncogene.

[34]  Roland Eils,et al.  Prognostic impact of gene expression-based classification for neuroblastoma. , 2010, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[35]  G. Marshall,et al.  The critical role of the class III histone deacetylase SIRT1 in cancer. , 2009, Cancer research.

[36]  R. Beijersbergen,et al.  Stabilization of N-Myc is a critical function of Aurora A in human neuroblastoma. , 2009, Cancer cell.

[37]  Zhenqiu Liu,et al.  Alterations in cell growth and signaling in ErbB3 binding protein-1 (Ebp1) deficient mice , 2008, BMC Cell Biology.

[38]  D. Brat,et al.  Human BRE1 is an E3 ubiquitin ligase for Ebp1 tumor suppressor. , 2008, Molecular biology of the cell.

[39]  E. Hurt,et al.  The crystal structure of Ebp1 reveals a methionine aminopeptidase fold as binding platform for multiple interactions , 2007, FEBS letters.

[40]  Jee-Yin Ahn,et al.  Ebp1 isoforms distinctively regulate cell survival and differentiation. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Jee-Yin Ahn,et al.  Nuclear Akt associates with PKC‐phosphorylated Ebp1, preventing DNA fragmentation by inhibition of caspase‐activated DNase , 2006, The EMBO journal.

[42]  Laxmikant V. Kalé,et al.  Scalable molecular dynamics with NAMD , 2005, J. Comput. Chem..

[43]  A. Hamburger,et al.  Specificity and heregulin regulation of Ebp1 (ErbB3 binding protein 1) mediated repression of androgen receptor signalling , 2004, British Journal of Cancer.

[44]  A. Peaston,et al.  Mechanisms of embryonal tumor initiation: distinct roles for MycN expression and MYCN amplification. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[45]  B. Clurman,et al.  The Fbw7 tumor suppressor regulates glycogen synthase kinase 3 phosphorylation-dependent c-Myc protein degradation , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[46]  G. Brodeur Neuroblastoma: biological insights into a clinical enigma , 2003, Nature Reviews Cancer.

[47]  A. Hamburger,et al.  Regulation of the ErbB3 binding protein Ebp1 by Protein Kinase C , 2001, Molecular and Cellular Endocrinology.

[48]  G. Mohapatra,et al.  Targeted expression of MYCN causes neuroblastoma in transgenic mice , 1997, The EMBO journal.

[49]  K Schulten,et al.  VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.

[50]  E. Jost,et al.  Molecular cloning of a murine cDNA encoding a novel protein, p38-2G4, which varies with the cell cycle. , 1995, Experimental cell research.