Virgibacillus senegalensis sp. nov., a new moderately halophilic bacterium isolated from human gut

[1]  Didier Raoult,et al.  The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota , 2015, Clinical Microbiology Reviews.

[2]  D. Raoult,et al.  A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species. , 2014, International journal of systematic and evolutionary microbiology.

[3]  M. Wenning,et al.  Virgibacillus halotolerans sp. nov., isolated from a dairy product. , 2013, International journal of systematic and evolutionary microbiology.

[4]  D. Raoult,et al.  Identification of Rare Pathogenic Bacteria in a Clinical Microbiology Laboratory: Impact of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry , 2013, Journal of Clinical Microbiology.

[5]  D. Raoult,et al.  Non-contiguous finished genome sequence and description of Brevibacillus massiliensis sp. nov. , 2013, Standards in genomic sciences.

[6]  D. Raoult,et al.  Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov. , 2013, Standards in genomic sciences.

[7]  D. Raoult,et al.  Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov , 2013, Standards in genomic sciences.

[8]  C. Robert,et al.  Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov. , 2013, Standards in genomic sciences.

[9]  Alexander F. Auch,et al.  Genome sequence-based species delimitation with confidence intervals and improved distance functions , 2013, BMC Bioinformatics.

[10]  C. Robert,et al.  Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov. , 2012, Standards in genomic sciences.

[11]  C. Robert,et al.  Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov. , 2012, Standards in genomic sciences.

[12]  C. Robert,et al.  Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov. , 2012, Standards in genomic sciences.

[13]  D Raoult,et al.  Microbial culturomics: paradigm shift in the human gut microbiome study. , 2012, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[14]  D. Raoult,et al.  Genome sequence and description of Aeromicrobium massiliense sp. nov. , 2012, Standards in genomic sciences.

[15]  D. Raoult,et al.  Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov. , 2012, Standards in genomic sciences.

[16]  Shukun Tang,et al.  Virgibacillusalbus sp. nov., a novel moderately halophilic bacterium isolated from Lop Nur salt lake in Xinjiang province, China , 2012, Antonie van Leeuwenhoek.

[17]  D. Raoult,et al.  Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov. , 2012, Standards in genomic sciences.

[18]  T. Oh,et al.  Virgibacillus campisalis sp. nov., from a marine solar saltern. , 2012, International journal of systematic and evolutionary microbiology.

[19]  M. Jung,et al.  Virgibacillus alimentarius sp. nov., isolated from a traditional Korean food. , 2011, International journal of systematic and evolutionary microbiology.

[20]  Sonja J. Prohaska,et al.  Proteinortho: Detection of (Co-)orthologs in large-scale analysis , 2011, BMC Bioinformatics.

[21]  E. Moore,et al.  Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology. , 2011, Systematic and applied microbiology.

[22]  S. Tanasupawat,et al.  Identification of moderately halophilic bacteria from Thai fermented fish ( pla-ra ) and proposal of Virgibacillus siamensis sp. nov. , 2010, The Journal of general and applied microbiology.

[23]  Miriam L. Land,et al.  Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification , 2022 .

[24]  T. Oh,et al.  Virgibacillus byunsanensis sp. nov., isolated from a marine solar saltern. , 2010, International journal of systematic and evolutionary microbiology.

[25]  Hans-Peter Klenk,et al.  Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison , 2010, Standards in genomic sciences.

[26]  C. Jeon,et al.  Virgibacillus xinjiangensis sp. nov., isolated from a Salt Lake of Xin-jiang Province in China , 2009, The Journal of Microbiology.

[27]  A. Ventosa,et al.  Virgibacillus salinus sp. nov., a moderately halophilic bacterium from sediment of a saline lake. , 2009, International journal of systematic and evolutionary microbiology.

[28]  L. Whyte,et al.  Virgibacillus arcticus sp. nov., a moderately halophilic, endospore-forming bacterium from permafrost in the Canadian high Arctic. , 2009, International journal of systematic and evolutionary microbiology.

[29]  Matthew Berriman,et al.  DNAPlotter: circular and linear interactive genome visualization , 2008, Bioinform..

[30]  Shukun Tang,et al.  Virgibacillus sediminis sp. nov., a moderately halophilic bacterium isolated from a salt lake in China. , 2008, International journal of systematic and evolutionary microbiology.

[31]  H. Kasai,et al.  Virgibacillus halophilus sp. nov., spore-forming bacteria isolated from soil in Japan. , 2007, International journal of systematic and evolutionary microbiology.

[32]  J. Morillo,et al.  Virgibacillus olivae sp. nov., isolated from waste wash-water from processing of Spanish-style green olives. , 2007, International journal of systematic and evolutionary microbiology.

[33]  Peter F. Hallin,et al.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes , 2007, Nucleic acids research.

[34]  T. Oh,et al.  Virgibacillus dokdonensis sp. nov., isolated from a Korean island, Dokdo, located at the edge of the East Sea in Korea. , 2005, International journal of systematic and evolutionary microbiology.

[35]  S. Brunak,et al.  Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.

[36]  F. Blattner,et al.  Mauve: multiple alignment of conserved genomic sequence with rearrangements. , 2004, Genome research.

[37]  P. de Vos,et al.  Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus sal , 2003, International journal of systematic and evolutionary microbiology.

[38]  A. Krogh,et al.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.

[39]  Kim Rutherford,et al.  Artemis: sequence visualization and annotation , 2000, Bioinform..

[40]  S. Eddy,et al.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.

[41]  O. Kandler,et al.  International Committee on Systematic Bacteriology: announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics. , 1987, Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology.

[42]  M. Kimura.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences , 1980, Journal of Molecular Evolution.

[43]  W. Ludwig,et al.  Notes on the characterization of prokaryote strains for taxonomic purposes. , 2010, International journal of systematic and evolutionary microbiology.

[44]  P. Schumann,et al.  Virgibacillus kekensis sp. nov., a moderately halophilic bacterium isolated from a salt lake in China. , 2008, International journal of systematic and evolutionary microbiology.

[45]  Ramon Rosselló-Móra,et al.  DNA-DNA Reassociation Methods Applied to Microbial Taxonomy and Their Critical Evaluation , 2006 .

[46]  E. Stackebrandt.  Taxonomic parameters revisited : tarnished gold standards , 2006 .

[47]  P. Vos,et al.  Virgibacillus : a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus , 1998 .