Bioremediation of soils contaminated with polycyclic aromatic hydrocarbons, petroleum, pesticides, chlorophenols and heavy metals by composting: Applications, microbes and future research needs.

Increasing soil pollution problems have caused world-wide concerns. Large numbers of contaminants such as polycyclic aromatic hydrocarbons (PAHs), petroleum and related products, pesticides, chlorophenols and heavy metals enter the soil, posing a huge threat to human health and natural ecosystem. Chemical and physical technologies for soil remediation are either incompetent or too costly. Composting or compost addition can simultaneously increase soil organic matter content and soil fertility besides bioremediation, and thus is believed to be one of the most cost-effective methods for soil remediation. This paper reviews the application of composting/compost for soil bioremediation, and further provides a critical view on the effects of this technology on microbial aspects in contaminated soils. This review also discusses the future research needs for contaminated soils.

[1]  P. Ndegwa,et al.  Bioremediation of oil-contaminated soil using Candida catenulata and food waste. , 2008, Environmental pollution.

[2]  B. Antízar-Ladislao,et al.  Laboratory studies of the remediation of polycyclic aromatic hydrocarbon contaminated soil by in-vessel composting. , 2005, Waste management.

[3]  J. Ortega-Calvo,et al.  Changes in enzyme activities and microbial biomass after >in situ> remediation of a heavy metal-contaminated soil , 2005 .

[4]  M. Johns,et al.  Remediation of metal contaminated soil with mineral-amended composts. , 2007, Environmental pollution.

[5]  M. Mcfarland,et al.  Removal of benzo(a)pyrene in soil composting systems amended with the white rot fungus Phanerochaete chrysosporium , 1995 .

[6]  Sébastien Sauvé,et al.  Speciation and Complexation of Cadmium in Extracted Soil Solutions , 2000 .

[7]  J. A. Alburquerque,et al.  Improvement of soil quality after "alperujo" compost application to two contaminated soils characterised by differing heavy metal solubility. , 2011, Journal of environmental management.

[8]  J. Ryckeboer,et al.  Bioremediation of diesel oil-contaminated soil by composting with biowaste. , 2003, Environmental pollution.

[9]  A. Tessier,et al.  Sequential extraction procedure for the speciation of particulate trace metals , 1979 .

[10]  E. Puglisi,et al.  Bioavailability and degradation of phenanthrene in compost amended soils. , 2007, Chemosphere.

[11]  V. Prigione,et al.  Pyrene degradation and detoxification in soil by a consortium of basidiomycetes isolated from compost: role of laccases and peroxidases. , 2009, Journal of hazardous materials.

[12]  M. Khamforoush,et al.  Application of the Haug model for process design of petroleum hydrocarbon-contaminated soil bioremediation by composting process , 2013, International Journal of Environmental Science and Technology.

[13]  M. Bernal,et al.  Effects of compost, pig slurry and lime on trace element solubility and toxicity in two soils differently affected by mining activities. , 2011, Chemosphere.

[14]  J. Obbard Ecotoxicological assessment of heavy metals in sewage sludge amended soils , 2001 .

[15]  C. Kabała,et al.  Fractionation and mobility of copper, lead, and zinc in soil profiles in the vicinity of a copper smelter. , 2001, Journal of environmental quality.

[16]  R. Haug The Practical Handbook of Compost Engineering , 1993 .

[17]  Jorge Loredo,et al.  Bioremediation of diesel-contaminated soils: Evaluation of potential in situ techniques by study of bacterial degradation , 2004, Biodegradation.

[18]  M. Wong,et al.  Microbial activity during composting of anthracene-contaminated soil. , 2003, Chemosphere.

[19]  Sanghun Lee,et al.  Effect of various amendments on heavy mineral oil bioremediation and soil microbial activity. , 2008, Bioresource technology.

[20]  O. Singh,et al.  Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation. , 2002, Trends in biotechnology.

[21]  M. Bernal,et al.  Fractionation of heavy metals and distribution of organic carbon in two contaminated soils amended with humic acids. , 2006, Chemosphere.

[22]  Xiao-Yun Jiang,et al.  Degradation of lead-contaminated lignocellulosic waste by Phanerochaete chrysosporium and the reduction of lead toxicity. , 2008, Environmental science & technology.

[23]  E. Kandeler,et al.  Influence of heavy metals on the functional diversity of soil microbial communities , 1996, Biology and Fertility of Soils.

[24]  L. Gianfreda,et al.  Response of an agricultural soil to pentachlorophenol (PCP) contamination and the addition of compost or dissolved organic matter , 2008 .

[25]  M. Penninckx,et al.  Successive rapid reductive dehalogenation and mineralization of pentachlorophenol by the indigenous microflora of farmyard manure compost , 2002, Journal of applied microbiology.

[26]  L. Beesley,et al.  Effects of biochar and greenwaste compost amendments on mobility, bioavailability and toxicity of inorganic and organic contaminants in a multi-element polluted soil. , 2010, Environmental pollution.

[27]  S. Yates,et al.  Application of Organic Amendments To Reduce Volatile Pesticide Emissions from Soil , 1998 .

[28]  S. Pollard,et al.  Influence of mature compost amendment on total and bioavailable polycyclic aromatic hydrocarbons in contaminated soils. , 2013, Chemosphere.

[29]  K. Tatsumi,et al.  Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas sp. enhanced by water-extractable organic matter from manure compost. , 2009, The Science of the total environment.

[30]  E. Esposito,et al.  Biotechnological strategies applied to the decontamination of soils polluted with heavy metals. , 2010, Biotechnology advances.

[31]  C. Massiani,et al.  Distribution, movement and plant availability of trace metals in soils amended with sewage sludge composts: application to low metal loadings , 1999 .

[32]  G. Stratton,et al.  Effects of Nutrient Amendments and Temperature on the Biodegradation of Pentachlorophenol Contaminated Soil , 2004 .

[33]  Davey L. Jones,et al.  Remediation of metal polluted mine soil with compost: co-composting versus incorporation. , 2009, Environmental pollution.

[34]  H. Fritze,et al.  In situ bioremediation through mulching of soil polluted by a copper-nickel smelter. , 2001, Journal of environmental quality.

[35]  G. Zeng,et al.  Use of iron oxide nanomaterials in wastewater treatment: a review. , 2012, The Science of the total environment.

[36]  C. Plaza,et al.  Carbon mineralization in an arid soil amended with thermally-dried and composted sewage sludges , 2007 .

[37]  K. Kim,et al.  Cobalt and nickel uptake by rice and accumulation in soil amended with municipal solid waste compost. , 2008, Ecotoxicology and environmental safety.

[38]  Guangming Zeng,et al.  Risks of neonicotinoid pesticides. , 2013, Science.

[39]  G. Dar Effects of cadmium and sewage-sludge on soil microbial biomass and enzyme activities , 1996 .

[40]  Dibyendu Sarkar,et al.  Bioremediation of petroleum hydrocarbons in contaminated soils: comparison of biosolids addition, carbon supplementation, and monitored natural attenuation. , 2005, Environmental pollution.

[41]  K. Kawamoto,et al.  Enzyme production activity of Phanerochaete chrysosporium and degradation of pentachlorophenol in a bioreactor. , 2002, Water research.

[42]  K. Jørgensen,et al.  Straw compost and bioremediated soil as inocula for the bioremediation of chlorophenol-contaminated soil , 1996, Applied and environmental microbiology.

[43]  G. Zeng,et al.  Impact of humic/fulvic acid on the removal of heavy metals from aqueous solutions using nanomaterials: a review. , 2014, The Science of the total environment.

[44]  Yong-guan Zhu,et al.  Bacterial communities predominant in the degradation of 13C(4)-4,5,9,10-pyrene during composting. , 2013, Bioresource technology.

[45]  Xu-xiang Zhang,et al.  Microbial PAH-Degradation in Soil: Degradation Pathways and Contributing Factors , 2006 .

[46]  G. Amy,et al.  Adsorption and removal of pentachlorophenol by white rot fungi in batch culture , 1994 .

[47]  Francisco Cabrera,et al.  Microbial community structure and function in a soil contaminated by heavy metals: effects of plant growth and different amendments , 2006 .

[48]  L. Delgado-Moreno,et al.  Compost and vermicompost of olive cake to bioremediate triazines-contaminated soil. , 2009, The Science of the total environment.

[49]  Jiachao Zhang,et al.  Effects of inoculation with Phanerochaete chrysosporium on remediation of pentachlorophenol-contaminated soil waste by composting , 2011 .

[50]  M. Walter,et al.  Field-scale bioremediation of pentachlorophenol by Trametes versicolor , 2005 .

[51]  H. Hamdi,et al.  Solid-phase bioassays and soil microbial activities to evaluate PAH-spiked soil ecotoxicity after a long-term bioremediation process simulating landfarming. , 2007, Chemosphere.

[52]  C. Plaza,et al.  Effects of Composted and Thermally Dried Sewage Sludges on Soil and Soil Humic Acid Properties , 2009 .

[53]  S. Vázquez,et al.  Effectiveness of the natural bacterial flora, biostimulation and bioaugmentation on the bioremediation of a hydrocarbon contaminated Antarctic soil , 2003 .

[54]  J. Wong,et al.  Effects of pig manure compost and nonionic-surfactant Tween 80 on phenanthrene and pyrene removal from soil vegetated with Agropyron elongatum. , 2008, Chemosphere.

[55]  Lars G. Öberg,et al.  Biochemical formation of PCDD/Fs from chlorophenols , 1992 .

[56]  P. Brookes,et al.  Microbial biomass dynamics following addition of metal-enriched sewage sludges to a sandy loam , 1995 .

[57]  H. Min,et al.  The negative interaction between the degradation of phenanthrene and tricyclazole in medium, soil and soil/compost mixture , 2008, Biodegradation.

[58]  S. Macnaughton,et al.  Microbial Population Changes during Bioremediation of an Experimental Oil Spill , 1998, Applied and Environmental Microbiology.

[59]  LorettaY Li,et al.  Phytoavailability and fractionation of lead and manganese in a contaminated soil after application of three amendments. , 2010, Bioresource technology.

[60]  C. Uhlig,et al.  Copper mobility and toxicity of soil percolation water to bacteria in a metal polluted forest soil , 2004, Plant and Soil.

[61]  D. J. Walker,et al.  Heavy metal bioavailability in a soil affected by mineral sulphides contamination following the mine spillage at Aznalcóllar (Spain) , 2003, Biodegradation.

[62]  Jiachao Zhang,et al.  Response of compost maturity and microbial community composition to pentachlorophenol (PCP)-contaminated soil during composting. , 2011, Bioresource technology.

[63]  T. Moorman,et al.  Organic amendments to enhance herbicide biodegradation in contaminated soils , 2001, Biology and Fertility of Soils.

[64]  M. Shailaja,et al.  Nitrite-induced enhancement of toxicity of phenanthrene in fish and its implications for coastal waters , 2003 .

[65]  P. Castaldi,et al.  Heavy metal immobilization by chemical amendments in a polluted soil and influence on white lupin growth. , 2005, Chemosphere.

[66]  Guangming Zeng,et al.  Shale gas: Surface water also at risk , 2013, Nature.

[67]  A. Ribeiro,et al.  Effects of municipal solid waste compost and sewage sludge on mineralization of soil organic matter , 2007 .

[68]  J. A. Alburquerque,et al.  Evaluation of “alperujo” composting based on organic matter degradation, humification and compost quality , 2009, Biodegradation.

[69]  José C del Río,et al.  Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. , 2005, International microbiology : the official journal of the Spanish Society for Microbiology.

[70]  V. Cala,et al.  Chemical characterization and evaluation of composts as organic amendments for immobilizing cadmium. , 2010, Bioresource technology.

[71]  T. Hernández,et al.  Toxicity of cadmium to soil microbial activity: effect of sewage sludge addition to soil on the ecological dose , 2002 .

[72]  Ken E. Giller,et al.  Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review , 1998 .

[73]  G. Zeng,et al.  Understanding Lignin-Degrading Reactions of Ligninolytic Enzymes: Binding Affinity and Interactional Profile , 2011, PloS one.

[74]  Angela Santagostino,et al.  Influence of compost amendment on microbial community and ecotoxicity of hydrocarbon-contaminated soils. , 2010, Bioresource technology.

[75]  Ling Bian,et al.  Analysis of heavy metal sources in soil using kriging interpolation on principal components. , 2014, Environmental science & technology.

[76]  T. Hernández,et al.  Microbial communities involved in the bioremediation of an aged recalcitrant hydrocarbon polluted soil by using organic amendments. , 2010, Bioresource technology.

[77]  Guangming Zeng,et al.  Recent development in the treatment of oily sludge from petroleum industry: a review. , 2013, Journal of hazardous materials.

[78]  V. Beškoski,et al.  Ex situ bioremediation of a soil contaminated by mazut (heavy residual fuel oil)--a field experiment. , 2011, Chemosphere.

[79]  T. Udeigwe,et al.  Application, chemistry, and environmental implications of contaminant-immobilization amendments on agricultural soil and water quality. , 2011, Environment international.

[80]  E. Barriuso,et al.  Modifications to atrazine degradation pathways in a loamy soil after addition of organic amendments , 1998 .

[81]  S. Sanyal,et al.  A study on natural and synthetic humic acids and their complexing ability towards cadmium , 2001, Plant and Soil.

[82]  T. Gallali,et al.  Effects of 5-year application of municipal solid waste compost on the distribution and mobility of heavy metals in a Tunisian calcareous soil , 2009 .

[83]  M. Bernal,et al.  Heavy metals fractionation and organic matter mineralisation in contaminated calcareous soil amended with organic materials. , 2006, Bioresource technology.

[84]  David Tilman,et al.  Biodiversity as a barrier to ecological invasion , 2002, Nature.

[85]  Jaewoo Chung,et al.  Role of organic amendments on enhanced bioremediation of heavy metal(loid) contaminated soils. , 2011, Journal of hazardous materials.

[86]  B. Salbu,et al.  Association of cadmium, zinc, copper, and nickel with components in naturally heavy metal‐rich soils studied by parallel and sequential extractions , 1999 .

[87]  Jiachao Zhang,et al.  Characterization of a laccase-like multicopper oxidase from newly isolated Streptomyces sp. C1 in agricultural waste compost and enzymatic decolorization of azo dyes , 2013 .

[88]  Davey L. Jones,et al.  Use of composts in the remediation of heavy metal contaminated soil. , 2010, Journal of hazardous materials.

[89]  Bin Wang,et al.  Removal of cationic dyes from aqueous solution using magnetic multi-wall carbon nanotube nanocomposite as adsorbent. , 2009, Journal of hazardous materials.

[90]  K. Semple,et al.  Impact of composting strategies on the treatment of soils contaminated with organic pollutants. , 2001, Environmental pollution.

[91]  Jiachao Zhang,et al.  Impact of Phanerochaete chrysosporium inoculation on indigenous bacterial communities during agricultural waste composting , 2012, Applied Microbiology and Biotechnology.

[92]  R. Canet,et al.  Biodegradation of polycyclic aromatic hydrocarbons (PAHs) by native microflora and combinations of white-rot fungi in a coal-tar contaminated soil. , 2001, Bioresource technology.

[93]  M. Kästner,et al.  Microbial degradation of polycyclic aromatic hydrocarbons in soils affected by the organic matrix of compost , 2004, Applied Microbiology and Biotechnology.

[94]  A. Hassen,et al.  Resistance of environmental bacteria to heavy metals , 1998 .

[95]  L. Tang,et al.  Changes of microbial population structure related to lignin degradation during lignocellulosic waste composting. , 2010, Bioresource technology.

[96]  D. J. Walker,et al.  The effects of soil amendments on heavy metal bioavailability in two contaminated Mediterranean soils. , 2003, Environmental pollution.

[97]  Q. Huang,et al.  Immobilization and phytotoxicity of Cd in contaminated soil amended with chicken manure compost. , 2009, Journal of hazardous materials.

[98]  R. Naidu,et al.  Bioremediation approaches for organic pollutants: a critical perspective. , 2011, Environment international.

[99]  Kazuya Watanabe,et al.  Microorganisms relevant to bioremediation. , 2001, Current opinion in biotechnology.

[100]  B. Okeke,et al.  Comparative bioremediation of soils contaminated with diesel oil by natural attenuation, biostimulation and bioaugmentation. , 2005, Bioresource technology.

[101]  M. Salkinoja-Salonen,et al.  Bioreclamation of chlorophenol-contaminated soil by composting , 1986, Applied Microbiology and Biotechnology.

[102]  P. Burgos,et al.  By-products as amendment to improve biochemical properties of trace element contaminated soils: Effects in time , 2010 .

[103]  K. Jørgensen,et al.  Effective and Safe Composting of Chlorophenol-Contaminated Soil in Pilot Scale , 1997 .

[104]  M. Sarrà,et al.  Bioremediation of PAHs-contaminated soil through composting: Influence of bioaugmentation and biostimulation on contaminant biodegradation , 2011 .

[105]  J. Ortega-Calvo,et al.  Effect of Humic Fractions and Clay on Biodegradation of Phenanthrene by a Pseudomonas fluorescens Strain Isolated from Soil , 1998, Applied and Environmental Microbiology.

[106]  Sérgio M. Santos,et al.  Influence of different organic amendments on the potential availability of metals from soil: a study on metal fractionation and extraction kinetics by EDTA. , 2010, Chemosphere.

[107]  J. Ortega-Calvo,et al.  Is it possible to increase bioavailability but not environmental risk of PAHs in bioremediation? , 2013, Journal of hazardous materials.

[108]  M. Wasserman,et al.  Composted municipal waste effects on chemical properties of a Brazilian soil. , 2007, Bioresource technology.

[109]  E. Madejón,et al.  In situ remediation of metal-contaminated soils with organic amendments: role of humic acids in copper bioavailability. , 2010, Chemosphere.

[110]  A. Idris,et al.  A study of heavy metals and their fate in the composting of tannery sludge. , 2007, Waste management.

[111]  A. Mrozik,et al.  Bioaugmentation as a strategy for cleaning up of soils contaminated with aromatic compounds. , 2010, Microbiological research.

[112]  Asha Gupta,et al.  Biodegradation of herbicide (atrazine) in contaminated soil using various bioprocessed materials. , 2008, Bioresource technology.

[113]  M. Bernal,et al.  Impact of fresh and composted solid olive husk and their water-soluble fractions on soil heavy metal fractionation; microbial biomass and plant uptake. , 2011, Journal of hazardous materials.

[114]  B. Xing,et al.  Binding of polycyclic aromatic hydrocarbons by humic acids formed during composting. , 2009, Environmental pollution.

[115]  Richard J. Ellis,et al.  Cultivation-Dependent and -Independent Approaches for Determining Bacterial Diversity in Heavy-Metal-Contaminated Soil , 2003, Applied and Environmental Microbiology.

[116]  G. Renella,et al.  Copper distribution and hydrolase activities in a contaminated soil amended with dolomitic limestone and compost. , 2011, Ecotoxicology and environmental safety.

[117]  F. Rivas,et al.  Polycyclic aromatic hydrocarbons sorbed on soils: a short review of chemical oxidation based treatments. , 2006, Journal of hazardous materials.

[118]  M. Tejada Application of different organic wastes in a soil polluted by cadmium: Effects on soil biological properties , 2009 .

[119]  Jiachao Zhang,et al.  Relative contributions of archaea and bacteria to microbial ammonia oxidation differ under different conditions during agricultural waste composting. , 2011, Bioresource technology.

[120]  J. Ahtiainen,et al.  Fate and Toxicity of Chlorophenols, Polychlorinated Dibenzo-p-dioxins, and Dibenzofurans during Composting of Contaminated Sawmill Soil , 1997 .

[121]  V. Cala,et al.  Short-term effects of biosolid and municipal solid waste applications on heavy metals distribution in a degraded soil under a semi-arid environment. , 2000, The Science of the total environment.

[122]  H. Baheri,et al.  Feasibility of fungi bioaugmentation in composting a flare pit soil. , 2002, Journal of hazardous materials.

[123]  Joon-Seok Park,et al.  Bioremediation of diesel-contaminated soil with composting. , 2002, Environmental pollution.

[124]  L. M. Shuman Organic Waste Amendments Effect on Zinc Fractions of Two Soils , 1999 .

[125]  A. Okoh,et al.  Biodegradation of heavy crude oil Maya using spent compost and sugar cane bagasse wastes. , 2007, Chemosphere.

[126]  M. Tejada,et al.  Application of different organic amendments in a gasoline contaminated soil: effect on soil microbial properties. , 2008, Bioresource technology.

[127]  Blanca Antizar-Ladislao,et al.  Microbial community structure changes during bioremediation of PAHs in an aged coal-tar contaminated soil by in-vessel composting , 2008 .