The marine bacterium Phaeobacter inhibens secures external ammonium by rapid buildup of intracellular nitrogen stocks
暂无分享,去创建一个
D. Schomburg | B. Blasius | R. Rabus | H. Hillebrand | A. Steinbüchel | Lars Wöhlbrand | K. Trautwein | H. Wilkes | C. Feenders | Michael Hensler | K. Wiegmann | Ekaterina Skorubskaya | Daniel Wünsch | Christina Hinrichs | Constanze Müller | Kristina Schell | Hanna S. Ruppersberg | J. Vagts | Sebastian Koßmehl | Philippe Schmidt-Kopplin
[1] B. Blasius,et al. Non-Redfield, nutrient synergy and flexible internal elemental stoichiometry in a marine bacterium , 2017, FEMS microbiology ecology.
[2] R. Rabus,et al. Photometric Determination of Ammonium and Phosphate in Seawater Medium Using a Microplate Reader , 2017, Journal of Molecular Microbiology and Biotechnology.
[3] D. Schomburg,et al. Native plasmids restrict growth of Phaeobacter inhibens DSM 17395: Energetic costs of plasmids assessed by quantitative physiological analyses. , 2016, Environmental microbiology.
[4] H. Vlamakis,et al. Dynamic metabolic exchange governs a marine algal-bacterial interaction , 2016, eLife.
[5] J. Collett,et al. Increasing importance of deposition of reduced nitrogen in the United States , 2016, Proceedings of the National Academy of Sciences.
[6] Maxwell Z. Wilson,et al. Mode of action and resistance studies unveil new roles for tropodithietic acid as an anticancer agent and the γ-glutamyl cycle as a proton sink , 2016, Proceedings of the National Academy of Sciences.
[7] A. Steinbüchel,et al. Features of the biotechnologically relevant polyamide family “cyanophycins” and their biosynthesis in prokaryotes and eukaryotes , 2016, Critical reviews in biotechnology.
[8] Milton H. Saier,et al. The Transporter Classification Database (TCDB): recent advances , 2015, Nucleic Acids Res..
[9] Peter D. Karp,et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases , 2015, Nucleic Acids Res..
[10] L. Gram,et al. Influence of Iron on Production of the Antibacterial Compound Tropodithietic Acid and Its Noninhibitory Analog in Phaeobacter inhibens , 2015, Applied and Environmental Microbiology.
[11] L. Gram,et al. Phaeobacter inhibens from the Roseobacter clade has an environmental niche as a surface colonizer in harbors. , 2015, Systematic and applied microbiology.
[12] G. Larsson,et al. Regulating the production of (R)-3-hydroxybutyrate in Escherichia coli by N or P limitation , 2015, Front. Microbiol..
[13] Antje Chang,et al. BRENDA in 2015: exciting developments in its 25th year of existence , 2014, Nucleic Acids Res..
[14] L. Gram,et al. Biofilm formation is not a prerequisite for production of the antibacterial compound tropodithietic acid in Phaeobacter inhibens DSM17395 , 2014, Journal of applied microbiology.
[15] Haiwei Luo,et al. Evolutionary Ecology of the Marine Roseobacter Clade , 2014, Microbiology and Molecular Reviews.
[16] A. Buchan,et al. Master recyclers: features and functions of bacteria associated with phytoplankton blooms , 2014, Nature Reviews Microbiology.
[17] Jeroen S. Dickschat,et al. Biosynthesis of the antibiotic tropodithietic acid by the marine bacterium Phaeobacter inhibens. , 2014, Chemical communications.
[18] Haiwei Luo,et al. Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters , 2014, The ISME Journal.
[19] V. Meas-Yedid,et al. The Intracellular Bacteria Chlamydia Hijack Peroxisomes and Utilize Their Enzymatic Capacity to Produce Bacteria-Specific Phospholipids , 2014, PloS one.
[20] Hans-Peter Klenk,et al. Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade). , 2014, Environmental microbiology.
[21] Hans V. Westerhoff,et al. Nitrogen Assimilation in Escherichia coli: Putting Molecular Data into a Systems Perspective , 2013, Microbiology and Molecular Reviews.
[22] Richard D. Smith,et al. Proteomic and Transcriptomic Analyses of “Candidatus Pelagibacter ubique” Describe the First PII-Independent Response to Nitrogen Limitation in a Free-Living Alphaproteobacterium , 2013, mBio.
[23] M. Göker,et al. Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395. , 2013, International journal of systematic and evolutionary microbiology.
[24] B. Blasius,et al. Subcellular protein localization (cell envelope) in Phaeobacter inhibens DSM 17395 , 2013, Proteomics.
[25] R. Reinhardt,et al. Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395 , 2013, Proteomics.
[26] R. Reinhardt,et al. Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients , 2013, Proteomics.
[27] L. Gram,et al. Disruption of Cell-to-Cell Signaling Does Not Abolish the Antagonism of Phaeobacter gallaeciensis toward the Fish Pathogen Vibrio anguillarum in Algal Systems , 2013, Applied and Environmental Microbiology.
[28] H. Sarmento,et al. Phytoplankton species‐specific release of dissolved free amino acids and their selective consumption by bacteria , 2013 .
[29] T. Thomas,et al. Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life , 2012, The ISME Journal.
[30] Niels Klitgord,et al. Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis , 2012, Nucleic acids research.
[31] R. Amann,et al. Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom , 2012, Science.
[32] R. Reinhardt,et al. Physiological and Proteomic Adaptation of “Aromatoleum aromaticum” EbN1 to Low Growth Rates in Benzoate-Limited, Anoxic Chemostats , 2012, Journal of bacteriology.
[33] J. Armengaud,et al. Comparative Proteogenomics of Twelve Roseobacter Exoproteomes Reveals Different Adaptive Strategies Among These Marine Bacteria* , 2011, Molecular & Cellular Proteomics.
[34] Paul Bowness,et al. Discovery of Candidate Serum Proteomic and Metabolomic Biomarkers in Ankylosing Spondylitis* , 2011, Molecular & Cellular Proteomics.
[35] S. Schulz,et al. Tropodithietic Acid Production in Phaeobacter gallaeciensis Is Regulated by N-Acyl Homoserine Lactone-Mediated Quorum Sensing , 2011, Journal of bacteriology.
[36] R. Kolter,et al. The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis. , 2011, Nature chemistry.
[37] W. Eisenreich,et al. Studies on the Mechanism of Ring Hydrolysis in Phenylacetate Degradation , 2011, The Journal of Biological Chemistry.
[38] R. Kudela,et al. Nitrogen cycle of the open ocean: from genes to ecosystems. , 2011, Annual review of marine science.
[39] J. Huisman,et al. Pulsed nitrogen supply induces dynamic changes in the amino acid composition and microcystin production of the harmful cyanobacterium Planktothrix agardhii. , 2010, FEMS microbiology ecology.
[40] I. Linhartova,et al. RTX proteins: a highly diverse family secreted by a common mechanism , 2010, FEMS microbiology reviews.
[41] D. Stahl,et al. Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria , 2009, Nature.
[42] Xiao-Jiang Feng,et al. Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli , 2009, Molecular systems biology.
[43] D. Schomburg,et al. Growth phase‐dependent global protein and metabolite profiles of Phaeobacter gallaeciensis strain DSM 17395, a member of the marine Roseobacter‐clade , 2009, Proteomics.
[44] Dietmar Schomburg,et al. MetaboliteDetector: comprehensive analysis tool for targeted and nontargeted GC/MS based metabolome analysis. , 2009, Analytical chemistry.
[45] L. Gram,et al. Phaeobacter and Ruegeria Species of the Roseobacter Clade Colonize Separate Niches in a Danish Turbot (Scophthalmus maximus)-Rearing Farm and Antagonize Vibrio anguillarum under Different Growth Conditions , 2008, Applied and Environmental Microbiology.
[46] Karsten Suhre,et al. MassTRIX: mass translator into pathways , 2008, Nucleic Acids Res..
[47] R. Rabus,et al. Solvent Stress Response of the Denitrifying Bacterium “Aromatoleum aromaticum” Strain EbN1 , 2008, Applied and Environmental Microbiology.
[48] F. Azam,et al. Microbial structuring of marine ecosystems , 2007, Nature Reviews Microbiology.
[49] F. Winkler,et al. The crystal structure of the Escherichia coli AmtB–GlnK complex reveals how GlnK regulates the ammonia channel , 2007, Proceedings of the National Academy of Sciences.
[50] H. Biebl,et al. Environmental biology of the marine Roseobacter lineage. , 2006, Annual review of microbiology.
[51] J. A. Camargo,et al. Ecological and toxicological effects of inorganic nitrogen pollution in aquatic ecosystems: A global assessment. , 2006, Environment international.
[52] Ulf Riebesell,et al. The regulation of carbon and nutrient assimilation in diatoms is significantly different from green algae. , 2006, Protist.
[53] M. Moran,et al. Overview of the Marine Roseobacter Lineage , 2005, Applied and Environmental Microbiology.
[54] A. Görg,et al. Current two‐dimensional electrophoresis technology for proteomics , 2004, Proteomics.
[55] D. Kirchman,et al. The uptake of inorganic nutrients by heterotrophic bacteria , 1994, Microbial Ecology.
[56] R. Rabus,et al. Evaluation of Two-Dimensional Difference Gel Electrophoresis for Protein Profiling , 2003, Journal of Molecular Microbiology and Biotechnology.
[57] H. Grossart,et al. Possible Quorum Sensing in Marine Snow Bacteria: Production of Acylated Homoserine Lactones by Roseobacter Strains Isolated from Marine Snow , 2002, Applied and Environmental Microbiology.
[58] F. Azam,et al. Oceanography: Sea snow microcosms , 2001, Nature.
[59] J. C. Goldman,et al. Rapid nitrogen uptake by marine bacteria , 2001 .
[60] Walker O. Smith,et al. Temperature effects on export production in the open ocean , 2000 .
[61] M. Merrick,et al. The glnKamtB operon. A conserved gene pair in prokaryotes. , 2000, Trends in genetics : TIG.
[62] P. Falkowski,et al. Biogeochemical Controls and Feedbacks on Ocean Primary Production , 1998, Science.
[63] J. Randerson,et al. Primary production of the biosphere: integrating terrestrial and oceanic components , 1998, Science.
[64] N. Anderson,et al. Analysis of changes in acute‐phase plasma proteins in an acute inflammatory response and in rheumatoid arthritis using two‐dimensional gel electrophoresis , 1998, Electrophoresis.
[65] Rainer Storn,et al. Differential Evolution – A Simple and Efficient Heuristic for global Optimization over Continuous Spaces , 1997, J. Glob. Optim..
[66] R. Storn,et al. Differential Evolution - A simple and efficient adaptive scheme for global optimization over continuous spaces , 2004 .
[67] M. Heldal,et al. Content of carbon, nitrogen, oxygen, sulfur and phosphorus in native aquatic and cultured bacteria , 1996 .
[68] I. Obernosterer,et al. Phytoplankton extracellular release and bacterial growth: dependence on the inorganic N:P ratio , 1995 .
[69] J. C. Goldman,et al. Ammonium regeneration and carbon utilization by marine bacteria grown on mixed substrates , 1991 .
[70] T. Egli,et al. Dynamics of microbial growth and cell composition in batch culture. , 1990, FEMS microbiology reviews.
[71] L. Ingber. Very fast simulated re-annealing , 1989 .
[72] T. Stanley. Species differences. , 1988, British journal of anaesthesia.
[73] David L. Kirchman,et al. Utilization of inorganic and organic nitrogen by bacteria in marine systems1 , 1986 .
[74] W. Admiraal,et al. Nitrogen metabolism of marine planktonic diatoms: Excretion, assimilation and cellular pools of free amino acids in seven species with different cell size , 1986 .
[75] D. Kleiner. Bacterial ammonium transport , 1985 .
[76] Q. Dortch,et al. Species differences in accumulation of nitrogen pools in phytoplankton , 1984 .
[77] J. Sambrook,et al. Molecular Cloning: A Laboratory Manual , 2001 .
[78] Ian Morris,et al. Extracellular release of carbon by marine phytoplankton; a physiological approach1 , 1980 .
[79] M. M. Bradford. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.
[80] M. R. Droop,et al. Vitamin B12 and Marine Ecology. IV. The Kinetics of Uptake, Growth and Inhibition in Monochrysis Lutheri , 1968, Journal of the Marine Biological Association of the United Kingdom.
[81] A. L. Chaney,et al. Modified reagents for determination of urea and ammonia. , 1962, Clinical chemistry.
[82] A. C. Redfield. The biological control of chemical factors in the environment. , 1960, Science progress.
[83] T. Horiuchi. RNA DEGRADATION AND DNA AND PROTEIN SYNTHESIS OF E. COLI B. IN A PHOSPHATE DEFICIENT MEDIUM , 1959 .
[84] J. Duguid,et al. The influence of cultural conditions on polysaccharide production by Aerobacter aerogenes. , 1953, Journal of general microbiology.
[85] O. H. Lowry,et al. Protein measurement with the Folin phenol reagent. , 1951, The Journal of biological chemistry.
[86] J. Monod,et al. Recherches sur la croissance des cultures bactériennes , 1942 .