Effects of pH, salt, and macromolecular crowding on the stability of FK506-binding protein: an integrated experimental and theoretical study.
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Huan-Xiang Zhou | T. Logan | Huan‐Xiang Zhou | D. Spencer | Ke Xu | Ke Xu | Timothy M Logan | Daniel S Spencer
[1] A. Minton,et al. Effect of a concentrated "inert" macromolecular cosolute on the stability of a globular protein with respect to denaturation by heat and by chaotropes: a statistical-thermodynamic model. , 2000, Biophysical journal.
[2] J. Udgaonkar,et al. Differential salt-induced stabilization of structure in the initial folding intermediate ensemble of barstar. , 2002, Journal of molecular biology.
[3] Huan-Xiang Zhou,et al. Comparison of calculation and experiment implicates significant electrostatic contributions to the binding stability of barnase and barstar. , 2003, Biophysical journal.
[4] D. Laurents,et al. pH dependence of the urea and guanidine hydrochloride denaturation of ribonuclease A and ribonuclease T1. , 1990, Biochemistry.
[5] V. Hilser,et al. The origin of pH-dependent changes in m-values for the denaturant-induced unfolding of proteins. , 2001, Journal of molecular biology.
[6] R F Standaert,et al. Atomic structure of FKBP-FK506, an immunophilin-immunosuppressant complex , 1991, Science.
[7] Andrew T. Russo,et al. Osmolyte effects on kinetics of FKBP12 C22A folding coupled with prolyl isomerization. , 2003, Journal of molecular biology.
[8] S. Jackson,et al. Context-dependent nature of destabilizing mutations on the stability of FKBP12. , 1998, Biochemistry.
[9] B. Kuhlman,et al. pKa values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions. , 1999, Biochemistry.
[10] A. Koide,et al. Stabilization of a fibronectin type III domain by the removal of unfavorable electrostatic interactions on the protein surface. , 2001, Biochemistry.
[11] Douglas D Banks,et al. The effect of salts on the activity and stability of Escherichia coli and Haloferax volcanii dihydrofolate reductases. , 2002, Journal of molecular biology.
[12] Franz Hofmeister,et al. Zur Lehre von der Wirkung der Salze , 1891, Archiv für experimentelle Pathologie und Pharmakologie.
[13] A. Minton,et al. Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: macromolecular crowding and protein stability revisited. , 2005, Biophysical journal.
[14] T. Logan,et al. Glutamine 53 is a gatekeeper residue in the FK506 binding protein. , 2002, Journal of molecular biology.
[15] M. Yao,et al. How valid are denaturant-induced unfolding free energy measurements? Level of conformance to common assumptions over an extended range of ribonuclease A stability. , 1995, Biochemistry.
[16] R. L. Baldwin,et al. How Hofmeister ion interactions affect protein stability. , 1996, Biophysical journal.
[17] T. Logan,et al. Human recombinant [C22A] FK506‐binding protein amide hydrogen exchange rates from mass spectrometry match and extend those from NMR , 1997, Protein science : a publication of the Protein Society.
[18] J. Lebowitz,et al. Thermodynamic Properties of Mixtures of Hard Spheres , 1964 .
[19] Huan-Xiang Zhou,et al. A Gaussian-chain model for treating residual charge–charge interactions in the unfolded state of proteins , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[20] K A Dill,et al. Stabilization of proteins in confined spaces. , 2001, Biochemistry.
[21] David Schell,et al. Charge-charge interactions are key determinants of the pK values of ionizable groups in ribonuclease Sa (pI=3.5) and a basic variant (pI=10.2). , 2003, Journal of molecular biology.
[22] K. Dill,et al. Protein stability: electrostatics and compact denatured states. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[23] A. Fersht,et al. Perturbed pKA-values in the denatured states of proteins. , 1995, Journal of molecular biology.
[24] R. L. Baldwin,et al. Sulfate anion stabilization of native ribonuclease A both by anion binding and by the Hofmeister effect , 2002, Protein science : a publication of the Protein Society.
[25] A. D. Robertson,et al. Hydrogen bonds and the pH dependence of ovomucoid third domain stability. , 1995, Biochemistry.
[26] Y. Thériault,et al. Structural characterization of the FK506 binding protein unfolded in urea and guanidine hydrochloride. , 1994, Journal of molecular biology.
[27] Feng Dong,et al. Electrostatic contributions to the stability of a thermophilic cold shock protein. , 2003, Biophysical journal.
[28] R. Bhat,et al. A mechanistic analysis of the increase in the thermal stability of proteins in aqueous carboxylic acid salt solutions , 2008, Protein science : a publication of the Protein Society.
[29] T. Logan,et al. N‐terminal extension changes the folding mechanism of the FK506‐binding protein , 2001, Protein science : a publication of the Protein Society.
[30] J. Kirkwood,et al. Proteins, amino acids and peptides as ions and dipolar ions , 1943 .
[31] Huan‐Xiang Zhou. Interactions of macromolecules with salt ions: An electrostatic theory for the Hofmeister effect , 2005, Proteins.
[32] Huan-Xiang Zhou,et al. Loops, linkages, rings, catenanes, cages, and crowders: entropy-based strategies for stabilizing proteins. , 2004, Accounts of chemical research.
[33] A. Elcock. Realistic modeling of the denatured states of proteins allows accurate calculations of the pH dependence of protein stability. , 1999, Journal of molecular biology.
[34] D. Laurents,et al. Urea denaturation of barnase: pH dependence and characterization of the unfolded state. , 1992, Biochemistry.
[35] Satoshi Fukuchi,et al. Unique amino acid composition of proteins in halophilic bacteria. , 2003, Journal of molecular biology.
[36] D. W. Bolen,et al. Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants. , 1988, Biochemistry.
[37] Huan-Xiang Zhou,et al. Direct test of the Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins. , 2003, Journal of the American Chemical Society.
[38] P. V. von Hippel,et al. On the conformational stability of globular proteins. The effects of various electrolytes and nonelectrolytes on the thermal ribonuclease transition. , 1965, The Journal of biological chemistry.
[39] Ashley M Buckle,et al. Energetic and structural analysis of the role of tryptophan 59 in FKBP12. , 2003, Biochemistry.
[40] Zoya Ignatova,et al. Monitoring protein stability and aggregation in vivo by real-time fluorescent labeling. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[41] Yun-Ru Chen,et al. Equilibrium and Kinetic Folding of a α-Helical Greek Key Protein Domain: Caspase Recruitment Domain (CARD) of RICK , 2003 .
[42] C. Pace,et al. Urea and Guanidine Hydrochloride Denaturation of Ribonuclease , Lysozyme , & Zhymotrypsin , and @ Lactoglobulin * , 2003 .
[43] A. Minton,et al. The Influence of Macromolecular Crowding and Macromolecular Confinement on Biochemical Reactions in Physiological Media* , 2001, The Journal of Biological Chemistry.
[44] Huan‐Xiang Zhou. Protein folding and binding in confined spaces and in crowded solutions , 2004, Journal of molecular recognition : JMR.
[45] Charles L Brooks,et al. The effects of ionic strength on protein stability: the cold shock protein family. , 2002, Journal of molecular biology.
[46] A. Minton,et al. Effect of dextran on protein stability and conformation attributed to macromolecular crowding. , 2003, Journal of molecular biology.
[47] V L Arcus,et al. pKA values of carboxyl groups in the native and denatured states of barnase: the pKA values of the denatured state are on average 0.4 units lower than those of model compounds. , 1995, Biochemistry.
[48] C. Tanford. Protein denaturation. , 1968, Advances in protein chemistry.
[49] D. Egan,et al. Equilibrium denaturation of recombinant human FK binding protein in urea. , 1993, Biochemistry.
[50] J. Skehel,et al. Structure of influenza haemagglutinin at the pH of membrane fusion , 1994, Nature.
[51] T. Logan,et al. Conformations of peptide fragments from the FK506 binding protein: comparison with the native and urea-unfolded states. , 1999, Journal of molecular biology.
[52] R. Godoy-Ruiz,et al. The efficiency of different salts to screen charge interactions in proteins: a Hofmeister effect? , 2004, Biophysical journal.
[53] S. Ghaemmaghami,et al. Quantitative protein stability measurement in vivo , 2001, Nature Structural Biology.
[54] D. Thirumalai,et al. Molecular crowding enhances native state stability and refolding rates of globular proteins. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[55] Huan-Xiang Zhou,et al. Polymer models of protein stability, folding, and interactions. , 2004, Biochemistry.
[56] D. Perl,et al. Electrostatic stabilization of a thermophilic cold shock protein. , 2001, Journal of molecular biology.
[57] Steven T. Whitten and,et al. pH dependence of stability of staphylococcal nuclease: evidence of substantial electrostatic interactions in the denatured state. , 2000 .
[58] Huan‐Xiang Zhou. Residual charge interactions in unfolded staphylococcal nuclease can be explained by the Gaussian-chain model. , 2002, Biophysical journal.
[59] L. Kay,et al. Site-specific contributions to the pH dependence of protein stability , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[60] V. Bloomfield,et al. Crowding effects on EcoRV kinetics and binding. , 1999, Biophysical journal.
[61] C M Dobson,et al. Effects of macromolecular crowding on protein folding and aggregation , 1999, The EMBO journal.
[62] D. W. Bolen,et al. Efficacy of macromolecular crowding in forcing proteins to fold. , 2002, Biophysical chemistry.
[63] C. Pace. Determination and analysis of urea and guanidine hydrochloride denaturation curves. , 1986, Methods in enzymology.
[64] S. Jackson,et al. Folding pathway of FKBP12 and characterisation of the transition state. , 1999, Journal of molecular biology.
[65] W. Surewicz,et al. Atypical Effect of Salts on the Thermodynamic Stability of Human Prion Protein* , 2003, Journal of Biological Chemistry.
[66] S. Fesik,et al. pH titration of the histidine residues of cyclophilin and FK506 binding protein in the absence and presence of immunosuppressant ligands. , 1994, Biochimica et biophysica acta.
[67] S. N. Timasheff,et al. On the role of surface tension in the stabilization of globular proteins , 1996, Protein science : a publication of the Protein Society.