Richness and Diversity of Bacterioplankton Species along an Estuarine Gradient in Moreton Bay, Australia

ABSTRACT Bacterioplankton community diversity was investigated in the subtropical Brisbane River-Moreton Bay estuary, Australia (27°25′S, 153°5′E). Bacterial communities were studied using automated rRNA intergenic spacer analysis (ARISA), which amplifies 16S-23S ribosomal DNA internally transcribed spacer regions from mixed-community DNA and detects the separated products on a fragment analyzer. Samples were collected from eight sites throughout the estuary and east to the East Australian Current (Coral Sea). Bacterioplankton communities had the highest operational taxonomic unit (OTU) richness, as measured by ARISA at eastern bay stations (S [total richness] = 84 to 85 OTU) and the lowest richness in the Coral Sea (S = 39 to 59 OTU). Richness correlated positively with bacterial abundance; however, there were no strong correlations between diversity and salinity, NO3− and PO43− concentrations, or chlorophyll a concentration. Bacterioplankton communities at the riverine stations were different from communities in the bay or Coral Sea. The main differences in OTU richness between stations were in taxa that each represented 0.1% (the detection limit) to 0.5% of the total amplified DNA, i.e., the “tail” of the distribution. We found that some bacterioplankton taxa are specific to distinct environments while others have a ubiquitous distribution from river to sea. Bacterioplankton richness and diversity patterns in the estuary are potentially a consequence of greater niche availability, mixing of local and adjacent environment communities, or intermediate disturbance. Furthermore, these results contrast with previous reports of spatially homogeneous bacterioplankton communities in other coastal waters.

[1]  Mary Ann Moran,et al.  Covariance of bacterioplankton composition and environmental variables in a temperate delta system , 2003 .

[2]  J. Borneman,et al.  Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation , 1997, Applied and environmental microbiology.

[3]  J. Hughes,et al.  Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity , 2001, Applied and Environmental Microbiology.

[4]  J. Fuhrman,et al.  Imperfect retention of natural bacterioplankton cells by glass fiber filters , 1995 .

[5]  David W. Schindler,et al.  Experimental perturbations of whole lakes as tests of hypotheses concerning ecosystem structure and function , 1990 .

[6]  A. Chao Nonparametric estimation of the number of classes in a population , 1984 .

[7]  N. J. Hall,et al.  Moreton Bay and Catchment , 1998 .

[8]  Gerard Muyzer,et al.  Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France) , 2002 .

[9]  J. Hollibaugh,et al.  Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California , 2000 .

[10]  F. James Rohlf,et al.  Biometry: The Principles and Practice of Statistics in Biological Research , 1969 .

[11]  K. Anger On the influence of sewage pollution on inshore benthic communities in the South of Kiel Bay , 1975, Helgoländer wissenschaftliche Meeresuntersuchungen.

[12]  W. Dennison,et al.  Virus‐like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries , 2001 .

[13]  T. Schmidt,et al.  rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria , 2000, Applied and Environmental Microbiology.

[14]  S. Giovannoni,et al.  Genetic diversity in Sargasso Sea bacterioplankton , 1990, Nature.

[15]  B. Bohannan,et al.  Bacterial diversity patterns along a gradient of primary productivity , 2003 .

[16]  J. Fuhrman,et al.  Microbial Desulfurization of a Crude Oil Middle-Distillate Fraction: Analysis of the Extent of Sulfur Removal and the Effect of Removal on Remaining Sulfur , 1999, Applied and Environmental Microbiology.

[17]  William A. Siebold,et al.  SAR11 clade dominates ocean surface bacterioplankton communities , 2002, Nature.

[18]  E. Virginia Armbrust,et al.  Phylogenetic Analysis of Particle-Attached and Free-Living Bacterial Communities in the Columbia River, Its Estuary, and the Adjacent Coastal Ocean , 1999, Applied and Environmental Microbiology.

[19]  F. Rodríguez-Valera,et al.  Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I , 2000, Molecular ecology.

[20]  C. Brunk,et al.  A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences. , 1994, BioTechniques.

[21]  Timothy R. Parsons,et al.  A manual of chemical and biological methods for seawater analysis , 1984 .

[22]  G. Bell,et al.  Diversity peaks at intermediate productivity in a laboratory microcosm , 2000, Nature.

[23]  Eva Abal,et al.  Moreton Bay Study: A scientific basis for the healthy waterways campaign , 1999 .

[24]  H. Jannasch,et al.  Bacterial Populations in Sea Water as Determined by Different Methods of Enumeration1 , 1959 .

[25]  S. Giovannoni,et al.  Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample , 1997, Applied and environmental microbiology.

[26]  J. Fuhrman,et al.  Extraction from Natural Planktonic Microorganisms of DNA Suitable for Molecular Biological Studies , 1988, Applied and environmental microbiology.

[27]  J. Fuhrman,et al.  Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria , 1998 .

[28]  H. Ducklow,et al.  Oceanic Bacterial Production , 1992 .

[29]  Robert R. Sokal,et al.  The Principles and Practice of Statistics in Biological Research. , 1982 .

[30]  H. Lotze,et al.  Complex interactions of climatic and ecological controls on macroalgal recruitment , 2002 .

[31]  S. Giovannoni,et al.  Evolution, diversity, and molecular ecology of marine prokaryotes , 2000 .

[32]  J. Fuhrman,et al.  Prokaryotic and viral diversity patterns in marine plankton , 2002, Ecological Research.

[33]  M. Middelboe,et al.  Stability of bacterial and viral community compositions in Danish coastal waters as depicted by DNA fingerprinting techniques , 2002 .

[34]  E. Triplett,et al.  Automated Approach for Ribosomal Intergenic Spacer Analysis of Microbial Diversity and Its Application to Freshwater Bacterial Communities , 1999, Applied and Environmental Microbiology.

[35]  Robert H. Whittaker,et al.  A Study of Summer Foliage Insect Communities in the Great Smoky Mountains , 1952 .