Japanese Encephalitis Virus Core Protein Inhibits Stress Granule Formation through an Interaction with Caprin-1 and Facilitates Viral Propagation

ABSTRACT Stress granules (SGs) are cytoplasmic foci composed of stalled translation preinitiation complexes induced by environmental stress stimuli, including viral infection. Since viral propagation completely depends on the host translational machinery, many viruses have evolved to circumvent the induction of SGs or co-opt SG components. In this study, we found that expression of Japanese encephalitis virus (JEV) core protein inhibits SG formation. Caprin-1 was identified as a binding partner of the core protein by an affinity capture mass spectrometry analysis. Alanine scanning mutagenesis revealed that Lys97 and Arg98 in the α-helix of the JEV core protein play a crucial role in the interaction with Caprin-1. In cells infected with a mutant JEV in which Lys97 and Arg98 were replaced with alanines in the core protein, the inhibition of SG formation was abrogated, and viral propagation was impaired. Furthermore, the mutant JEV exhibited attenuated virulence in mice. These results suggest that the JEV core protein circumvents translational shutoff by inhibiting SG formation through an interaction with Caprin-1 and facilitates viral propagation in vitro and in vivo.

[1]  Y. Matsuura,et al.  Novel Permissive Cell Lines for Complete Propagation of Hepatitis C Virus , 2014, Journal of Virology.

[2]  K. Ishii,et al.  Innate Immune Response Induced by Baculovirus Attenuates Transgene Expression in Mammalian Cells , 2013, Journal of Virology.

[3]  Yi-Ling Lin,et al.  Blocking Double-Stranded RNA-Activated Protein Kinase PKR by Japanese Encephalitis Virus Nonstructural Protein 2A , 2012, Journal of Virology.

[4]  Y. Maehara,et al.  Expression of MicroRNA miR-122 Facilitates an Efficient Replication in Nonhepatic Cells upon Infection with Hepatitis C Virus , 2012, Journal of Virology.

[5]  S. Akira,et al.  CD44 Participates in IP-10 Induction in Cells in Which Hepatitis C Virus RNA Is Replicating, through an Interaction with Toll-Like Receptor 2 and Hyaluronan , 2012, Journal of Virology.

[6]  Denys A. Khaperskyy,et al.  Influenza A virus inhibits cytoplasmic stress granule formation , 2012, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[7]  M. Brinton,et al.  West Nile Virus Infections Suppress Early Viral RNA Synthesis and Avoid Inducing the Cell Stress Granule Response , 2012, Journal of Virology.

[8]  M. Brinton,et al.  West Nile virus infection does not induce PKR activation in rodent cells. , 2011, Virology.

[9]  W. Kamitani,et al.  Establishment of a Novel Permissive Cell Line for the Propagation of Hepatitis C Virus by Expression of MicroRNA miR122 , 2011, Journal of Virology.

[10]  Siok Ghee Ler,et al.  Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3’ UTR structures , 2011, RNA biology.

[11]  W. Kamitani,et al.  Heterogeneous Nuclear Ribonucleoprotein A2 Participates in the Replication of Japanese Encephalitis Virus through an Interaction with Viral Proteins and RNA , 2011, Journal of Virology.

[12]  C. Rice,et al.  Hepatitis C Virus Co-Opts Ras-GTPase-Activating Protein-Binding Protein 1 for Its Genome Replication , 2011, Journal of Virology.

[13]  N. Kato,et al.  Hepatitis C Virus Hijacks P-Body and Stress Granule Components around Lipid Droplets , 2011, Journal of Virology.

[14]  Y. Matsuura,et al.  Involvement of cyclophilin B in the replication of Japanese encephalitis virus. , 2011, Virology.

[15]  I. Sola,et al.  The Polypyrimidine Tract-Binding Protein Affects Coronavirus RNA Accumulation Levels and Relocalizes Viral RNAs to Novel Cytoplasmic Domains Different from Replication-Transcription Sites , 2011, Journal of Virology.

[16]  A. Sadler,et al.  The role of protein kinase R in the interferon response. , 2011, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[17]  J. Kalita,et al.  Overview: Japanese encephalitis , 2010, Progress in Neurobiology.

[18]  M. Myers,et al.  The pseudophosphatase MK-STYX interacts with G3BP and decreases stress granule formation , 2010, The Biochemical journal.

[19]  L. Ajamian,et al.  Novel Staufen1 ribonucleoproteins prevent formation of stress granules but favour encapsidation of HIV-1 genomic RNA , 2010, Journal of Cell Science.

[20]  Charles M. Rice,et al.  Architects of assembly: roles of Flaviviridae non-structural proteins in virion morphogenesis , 2008, Nature Reviews Microbiology.

[21]  C. Arias,et al.  Rotavirus Infection Induces the Phosphorylation of eIF2α but Prevents the Formation of Stress Granules , 2007, Journal of Virology.

[22]  R. Lloyd,et al.  Inhibition of cytoplasmic mRNA stress granule formation by a viral proteinase. , 2007, Cell host & microbe.

[23]  B. Moss,et al.  Colocalization of transcription and translation within cytoplasmic poxvirus factories coordinates viral expression and subjugates host functions. , 2007, Cell host & microbe.

[24]  Y. Matsuura,et al.  Processing of Capsid Protein by Cathepsin L Plays a Crucial Role in Replication of Japanese Encephalitis Virus in Neural and Macrophage Cells , 2007, Journal of Virology.

[25]  M. Emara,et al.  Interaction of TIA-1/TIAR with West Nile and dengue virus products in infected cells interferes with stress granule formation and processing body assembly , 2007, Proceedings of the National Academy of Sciences.

[26]  M. David,et al.  Distinct Structural Features ofCaprin-1 Mediate Its Interaction with G3BP-1 and Its Induction of Phosphorylation of Eukaryotic Translation InitiationFactor 2α, Entry to Cytoplasmic Stress Granules, and Selective Interaction with a Subset of mRNAs , 2007, Molecular and Cellular Biology.

[27]  Han-Woong Lee,et al.  Jab1 Mediates Cytoplasmic Localization and Degradation of West Nile Virus Capsid Protein* , 2006, Journal of Biological Chemistry.

[28]  Anantha Marri,et al.  PKR and RNase L Contribute to Protection against Lethal West Nile Virus Infection by Controlling Early Viral Spread in the Periphery and Replication in Neurons , 2006, Journal of Virology.

[29]  Y. Matsuura,et al.  Nucleolar Protein B23 Interacts with Japanese Encephalitis Virus Core Protein and Participates in Viral Replication , 2006, Microbiology and immunology.

[30]  M. Katze,et al.  Reovirus Induces and Benefits from an Integrated Cellular Stress Response , 2006, Journal of Virology.

[31]  M. Lai,et al.  Human VAP-B Is Involved in Hepatitis C Virus Replication through Interaction with NS5A and NS5B , 2005, Journal of Virology.

[32]  P. Anderson,et al.  Importance of eIF2alpha phosphorylation and stress granule assembly in alphavirus translation regulation. , 2005, Molecular biology of the cell.

[33]  T. Wakita,et al.  Characterization of the E-138 (Glu/Lys) mutation in Japanese encephalitis virus by using a stable, full-length, infectious cDNA clone. , 2005, The Journal of general virology.

[34]  M. Tokunaga,et al.  A Novel RNA-Binding Protein in Neuronal RNA Granules: Regulatory Machinery for Local Translation , 2005, The Journal of Neuroscience.

[35]  E. Konishi,et al.  Nuclear Localization of Japanese Encephalitis Virus Core Protein Enhances Viral Replication , 2005, Journal of Virology.

[36]  P. Anderson,et al.  Stress granule assembly is mediated by prion-like aggregation of TIA-1. , 2004, Molecular biology of the cell.

[37]  Carol Beth Post,et al.  Solution structure of dengue virus capsid protein reveals another fold. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[38]  M. Quadroni,et al.  Activation/Division of Lymphocytes Results in Increased Levels of Cytoplasmic Activation/Proliferation-Associated Protein-1: Prototype of a New Family of Proteins1 , 2004, The Journal of Immunology.

[39]  Christopher T. Jones,et al.  Flavivirus Capsid Is a Dimeric Alpha-Helical Protein , 2003, Journal of Virology.

[40]  K. Chébli,et al.  The RasGAP-associated endoribonuclease G3BP assembles stress granules , 2003, The Journal of cell biology.

[41]  P. Anderson,et al.  Cell Proteins TIA-1 and TIAR Interact with the 3′ Stem-Loop of the West Nile Virus Complementary Minus-Strand RNA and Facilitate Virus Replication , 2002, Journal of Virology.

[42]  S. H. Wang,et al.  The heterogeneous nuclear ribonucleoprotein K (hnRNP K) interacts with dengue virus core protein. , 2001, DNA and cell biology.

[43]  Giulio Draetta,et al.  Ras–GAP SH3 domain binding protein (G3BP) is a modulator of USP10, a novel human ubiquitin specific protease , 2001, Oncogene.

[44]  Michael G. Katze,et al.  Regulation of mRNA Translation and Cellular Signaling by Hepatitis C Virus Nonstructural Protein NS5A , 2001, Journal of Virology.

[45]  David E. Golan,et al.  Dynamic Shuttling of Tia-1 Accompanies the Recruitment of mRNA to Mammalian Stress Granules , 2000, The Journal of cell biology.

[46]  Michael G. Katze,et al.  Control of PKR Protein Kinase by Hepatitis C Virus Nonstructural 5A Protein: Molecular Mechanisms of Kinase Regulation , 1998, Molecular and Cellular Biology.

[47]  M. Katze,et al.  Molecular mechanisms of interferon resistance mediated by viral-directed inhibition of PKR, the interferon-induced protein kinase. , 1998, Pharmacology & therapeutics.

[48]  M. Katze,et al.  Evidence that hepatitis C virus resistance to interferon is mediated through repression of the PKR protein kinase by the nonstructural 5A protein. , 1997, Virology.

[49]  K. Scharf,et al.  Cytoplasmic heat shock granules are formed from precursor particles and are associated with a specific set of mRNAs , 1989, Molecular and cellular biology.

[50]  S. Kuhara,et al.  Complete nucleotide sequence of the Japanese encephalitis virus genome RNA. , 1987, Virology.

[51]  E. G. Westaway,et al.  Replication strategy of Kunjin virus: evidence for recycling role of replicative form RNA as template in semiconservative and asymmetric replication. , 1985, Virology.

[52]  E. G. Westaway,et al.  RNA binding properties of core protein of the flavivirus Kunjin , 2005, Archives of Virology.

[53]  P. Anderson,et al.  Stressful initiations. , 2002, Journal of cell science.