Efflux, Signaling and Warfare in a Polymicrobial World

The discovery void of antimicrobial development has occurred at a time when the world has seen a rapid emergence and spread of antimicrobial resistance, the ‘perfect storm’ as it has often been described. While the discovery and development of new antibiotics has continued in the research sphere, the pipeline to clinic has largely been fed by derivatives of existing classes of antibiotics, each prone to pre-existing resistance mechanisms. A novel approach to infection management has come from the ecological perspective whereby microbial networks and evolved communities already possess small molecular capabilities for pathogen control. The spatiotemporal nature of microbial interactions is such that mutualism and parasitism are often two ends of the same stick. Small molecule efflux inhibitors can directly target antibiotic efflux, a primary resistance mechanism adopted by many species of bacteria and fungi. However, a much broader anti-infective capability resides within the action of these inhibitors, borne from the role of efflux in key physiological and virulence processes, including biofilm formation, toxin efflux, and stress management. Understanding how these behaviors manifest within complex polymicrobial communities is key to unlocking the full potential of the advanced repertoires of efflux inhibitors.

[1]  Anais Vieira Da Cruz,et al.  Update on the Discovery of Efflux Pump Inhibitors against Critical Priority Gram-Negative Bacteria , 2023, Antibiotics.

[2]  Shaolin Wang,et al.  Distribution and spread of the mobilised RND efflux pump gene cluster tmexCD-toprJ in clinical Gram-negative bacteria: a molecular epidemiological study. , 2022, The Lancet. Microbe.

[3]  O. Serichantalergs,et al.  Molecular characterization of multidrug-resistant ESKAPEE pathogens from clinical samples in Chonburi, Thailand (2017–2018) , 2022, BMC Infectious Diseases.

[4]  M. Wilcox,et al.  Exposure to bile and gastric juice can impact the aerodigestive microbiome in people with cystic fibrosis , 2022, Scientific Reports.

[5]  G. Biuković,et al.  Enterococcus faecalis Antagonizes Pseudomonas aeruginosa Growth in Mixed-Species Interactions , 2022, Journal of bacteriology.

[6]  G. Zúñiga,et al.  Nucleotide substitutions in the mexR, nalC and nalD regulator genes of the MexAB-OprM efflux pump are maintained in Pseudomonas aeruginosa genetic lineages , 2022, PloS one.

[7]  Guyue Cheng,et al.  Bacterial Multidrug Efflux Pumps at the Frontline of Antimicrobial Resistance: An Overview , 2022, Antibiotics.

[8]  Iain G. Johnston,et al.  Dynamic Boolean modelling reveals the influence of energy supply on bacterial efflux pump expression , 2021, bioRxiv.

[9]  R. Nakashima,et al.  Function and Inhibitory Mechanisms of Multidrug Efflux Pumps , 2021, Frontiers in Microbiology.

[10]  Melissa H. Brown,et al.  Efflux Pump Mediated Antimicrobial Resistance by Staphylococci in Health-Related Environments: Challenges and the Quest for Inhibition , 2021, Antibiotics.

[11]  I. Paulsen,et al.  Three faces of biofilms: a microbial lifestyle, a nascent multicellular organism, and an incubator for diversity , 2021, NPJ biofilms and microbiomes.

[12]  S. Sabatini,et al.  Microbial Efflux Pump Inhibitors: A Journey around Quinoline and Indole Derivatives , 2021, Molecules.

[13]  D. Sharma,et al.  Focused review on dual inhibition of quorum sensing and efflux pumps: A potential way to combat multi drug resistant Staphylococcus aureus infections. , 2021, International journal of biological macromolecules.

[14]  E. Sousa,et al.  Metabolites from Marine-Derived Fungi as Potential Antimicrobial Adjuvants , 2021, Marine drugs.

[15]  Y. Eguchi,et al.  Host - Bacterial Pathogen Communication: The Wily Role of the Multidrug Efflux Pumps of the MFS Family , 2021, Frontiers in Molecular Biosciences.

[16]  Erica M. Hartmann,et al.  The Future of Bacteriophage Therapy Will Promote Antimicrobial Susceptibility , 2021, mSystems.

[17]  S. Sabatini,et al.  From Quinoline to Quinazoline‐Based S. aureus NorA Efflux Pump Inhibitors by Coupling a Focused Scaffold Hopping Approach and a Pharmacophore Search , 2021, ChemMedChem.

[18]  V. Tiwari,et al.  A Comprehensive Review on Pharmacology of Efflux Pumps and their Inhibitors in Antibiotic Resistance. , 2021, European journal of pharmacology.

[19]  M. Picard,et al.  Structure, Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria , 2021, Chemical reviews.

[20]  M. Sircili,et al.  Outer Membrane Vesicles (OMVs) Produced by Gram-Negative Bacteria: Structure, Functions, Biogenesis, and Vaccine Application , 2021, BioMed research international.

[21]  Karl A. Hassan,et al.  Physiological Functions of Bacterial "Multidrug" Efflux Pumps. , 2021, Chemical reviews.

[22]  C. Spalluto,et al.  Influence of Hypoxia on the Epithelial-Pathogen Interactions in the Lung: Implications for Respiratory Disease , 2021, Frontiers in Immunology.

[23]  F. O'Gara,et al.  Bile Acid Signal Molecules Associate Temporally with Respiratory Inflammation and Microbiome Signatures in Clinically Stable Cystic Fibrosis Patients , 2020, Microorganisms.

[24]  L. K. Thompson,et al.  The Evolutionary Conservation of Escherichia coli Drug Efflux Pumps Supports Physiological Functions , 2020, Journal of Bacteriology.

[25]  L. O’Neill,et al.  The Role of HIF in Immunity and Inflammation. , 2020, Cell metabolism.

[26]  J. Martínez,et al.  The impaired quorum sensing response of MexAB-OprM efflux pump overexpressing mutants is not due to non-physiological efflux of 3-oxo-C12-HSL. , 2020, Environmental microbiology.

[27]  D. Rivett,et al.  Bacterial dominance is due to effective utilisation of secondary metabolites produced by competitors , 2020, Scientific Reports.

[28]  T. Nagakubo,et al.  Cracking Open Bacterial Membrane Vesicles , 2020, Frontiers in Microbiology.

[29]  James Gurney,et al.  Phage steering of antibiotic-resistance evolution in the bacterial pathogen Pseudomonas aeruginosa , 2019, bioRxiv.

[30]  Weiwei Huang,et al.  Development of novel nanoantibiotics using an outer membrane vesicle-based drug efflux mechanism. , 2019, Journal of controlled release : official journal of the Controlled Release Society.

[31]  Mehreen Arshad,et al.  MarR family proteins are important regulators of clinically relevant antibiotic resistance , 2019, Protein science : a publication of the Protein Society.

[32]  S. Choi,et al.  Crystal Structure of the Regulatory Domain of MexT, a Transcriptional Activator of the MexEF-OprN Efflux Pump in Pseudomonas aeruginosa , 2019, Molecules and cells.

[33]  F. O'Gara,et al.  Exposure to Bile Leads to the Emergence of Adaptive Signaling Variants in the Opportunistic Pathogen Pseudomonas aeruginosa , 2019, Front. Microbiol..

[34]  F. Barras,et al.  The Varied Role of Efflux Pumps of the MFS Family in the Interplay of Bacteria with Animal and Plant Cells , 2019, Microorganisms.

[35]  Karl A. Hassan,et al.  Short-chain diamines are the physiological substrates of PACE family efflux pumps , 2019, Proceedings of the National Academy of Sciences.

[36]  B. Bassler,et al.  Bacterial quorum sensing in complex and dynamically changing environments , 2019, Nature Reviews Microbiology.

[37]  Suzana M. Ribeiro,et al.  Recent Advances in Anti-virulence Therapeutic Strategies With a Focus on Dismantling Bacterial Membrane Microdomains, Toxin Neutralization, Quorum-Sensing Interference and Biofilm Inhibition , 2019, Front. Cell. Infect. Microbiol..

[38]  A. Oliver,et al.  Social Behavior of Antibiotic Resistant Mutants Within Pseudomonas aeruginosa Biofilm Communities , 2019, Front. Microbiol..

[39]  F. Barras,et al.  The MFS efflux pump EmrKY contributes to the survival of Shigella within macrophages , 2019, Scientific Reports.

[40]  Wei Min,et al.  Phenazine production promotes antibiotic tolerance and metabolic heterogeneity in Pseudomonas aeruginosa biofilms , 2019, Nature Communications.

[41]  R. Pathania,et al.  Efflux pump inhibitors for bacterial pathogens: From bench to bedside , 2019, The Indian journal of medical research.

[42]  P. Hsu,et al.  Brown and Red Seaweeds Serve as Potential Efflux Pump Inhibitors for Drug-Resistant Escherichia coli , 2019, Evidence-based complementary and alternative medicine : eCAM.

[43]  M. Ackermann,et al.  Why microbes secrete molecules to modify their environment: the case of iron-chelating siderophores , 2019, Journal of the Royal Society Interface.

[44]  J. Martínez,et al.  Role of the Multidrug Resistance Efflux Pump MexCD-OprJ in the Pseudomonas aeruginosa Quorum Sensing Response , 2018, Front. Microbiol..

[45]  A. Ji,et al.  Efflux pump-mediated resistance to antifungal compounds can be prevented by conjugation with triphenylphosphonium cation , 2018, Nature Communications.

[46]  D. Newman,et al.  Both toxic and beneficial effects of pyocyanin contribute to the lifecycle of Pseudomonas aeruginosa , 2018, Molecular microbiology.

[47]  M. Dunlop,et al.  Antibiotic export by efflux pumps affects growth of neighboring bacteria , 2018, Scientific Reports.

[48]  T. Hoang,et al.  Two Regulators, PA3898 and PA2100, Modulate the Pseudomonas aeruginosa Multidrug Resistance MexAB-OprM and EmrAB Efflux Pumps and Biofilm Formation , 2018, Antimicrobial Agents and Chemotherapy.

[49]  F. Corona,et al.  Biolog Phenotype Microarray Is a Tool for the Identification of Multidrug Resistance Efflux Pump Inducers , 2018, Antimicrobial Agents and Chemotherapy.

[50]  J. Sutton,et al.  Role of bacterial efflux pumps in biofilm formation , 2018, The Journal of antimicrobial chemotherapy.

[51]  G. Kaatz,et al.  Studies on 2-phenylquinoline Staphylococcus aureus NorA efflux pump inhibitors: New insights on the C-6 position. , 2018, European journal of medicinal chemistry.

[52]  G. Phan,et al.  Functional Mechanism of the Efflux Pumps Transcription Regulators From Pseudomonas aeruginosa Based on 3D Structures , 2018, Front. Mol. Biosci..

[53]  Radleigh G. Santos,et al.  Identification of a Novel Polyamine Scaffold With Potent Efflux Pump Inhibition Activity Toward Multi-Drug Resistant Bacterial Pathogens , 2018, Front. Microbiol..

[54]  G. Yan,et al.  Hypoxia induces lactate secretion and glycolytic efflux by downregulating mitochondrial pyruvate carrier levels in human umbilical vein endothelial cells. , 2018, Molecular medicine reports.

[55]  V. Koronakis,et al.  Antibiotic Resistance Mediated by the MacB ABC Transporter Family: A Structural and Functional Perspective , 2018, Front. Microbiol..

[56]  F. O'Gara,et al.  The expanding horizon of alkyl quinolone signalling and communication in polycellular interactomes. , 2018, FEMS microbiology letters.

[57]  John A Elefteriades,et al.  Phage treatment of an aortic graft infected with Pseudomonas aeruginosa , 2018, Evolution, medicine, and public health.

[58]  Karl A. Hassan,et al.  Pacing across the membrane: the novel PACE family of efflux pumps is widespread in Gram-negative pathogens , 2018, Research in microbiology.

[59]  Benjamin Neuenswander,et al.  Quorum-sensing control of antibiotic resistance stabilizes cooperation in Chromobacterium violaceum , 2018, The ISME Journal.

[60]  Stephen P. Diggle,et al.  Progress in and promise of bacterial quorum sensing research , 2017, Nature.

[61]  H. Zgurskaya,et al.  Kinetic Control of Quorum Sensing in Pseudomonas aeruginosa by Multidrug Efflux Pumps. , 2017, ACS infectious diseases.

[62]  F. O'Gara,et al.  Disruption of N‐acyl‐homoserine lactone‐specific signalling and virulence in clinical pathogens by marine sponge bacteria , 2017, Microbial biotechnology.

[63]  R. Pathania,et al.  The small molecule IITR08027 restores the antibacterial activity of fluoroquinolones against multidrug-resistant Acinetobacter baumannii by efflux inhibition. , 2017, International journal of antimicrobial agents.

[64]  J. Ramos,et al.  Interspecies cross‐talk between co‐cultured Pseudomonas putida and Escherichia coli , 2017, Environmental microbiology reports.

[65]  J. Martínez,et al.  Metabolic Compensation of Fitness Costs Is a General Outcome for Antibiotic-Resistant Pseudomonas aeruginosa Mutants Overexpressing Efflux Pumps , 2017, mBio.

[66]  M. Nocchetti,et al.  Investigation on the effect of known potent S. aureus NorA efflux pump inhibitors on the staphylococcal biofilm formation , 2017 .

[67]  D. Doyle,et al.  Efflux drug transporters at the forefront of antimicrobial resistance , 2017, European Biophysics Journal.

[68]  J. Fothergill,et al.  The role of multispecies social interactions in shaping Pseudomonas aeruginosa pathogenicity in the cystic fibrosis lung , 2017, FEMS microbiology letters.

[69]  A. Jan Outer Membrane Vesicles (OMVs) of Gram-negative Bacteria: A Perspective Update , 2017, Front. Microbiol..

[70]  L. Eberl,et al.  Membrane vesicle-mediated bacterial communication , 2017, The ISME Journal.

[71]  L. Sklar,et al.  Targeting efflux pumps to overcome antifungal drug resistance. , 2016, Future medicinal chemistry.

[72]  F. O'Gara,et al.  Bile signalling promotes chronic respiratory infections and antibiotic tolerance , 2016, Scientific Reports.

[73]  F. O'Gara,et al.  Bile acids destabilise HIF-1α and promote anti-tumour phenotypes in cancer cell models , 2016, BMC Cancer.

[74]  K. Shepard,et al.  The Pseudomonas aeruginosa efflux pump MexGHI-OpmD transports a natural phenazine that controls gene expression and biofilm development , 2016, Proceedings of the National Academy of Sciences.

[75]  Mark J. Sistrom,et al.  Phage selection restores antibiotic sensitivity in MDR Pseudomonas aeruginosa , 2016, Scientific Reports.

[76]  P. Woster,et al.  Antibacterial Diamines Targeting Bacterial Membranes. , 2016, Journal of medicinal chemistry.

[77]  F. Corona,et al.  Bacterial Multidrug Efflux Pumps: Much More Than Antibiotic Resistance Determinants , 2016, Microorganisms.

[78]  E. Yu,et al.  The AbgT family: A novel class of antimetabolite transporters , 2016, Protein science : a publication of the Protein Society.

[79]  T. Wood,et al.  Can resistance against quorum-sensing interference be selected? , 2015, The ISME Journal.

[80]  M. Kaparakis-Liaskos,et al.  Immune modulation by bacterial outer membrane vesicles , 2015, Nature Reviews Immunology.

[81]  T. Opperman,et al.  Recent advances toward a molecular mechanism of efflux pump inhibition , 2015, Front. Microbiol..

[82]  F. Jerry Reen,et al.  Emerging Concepts Promising New Horizons for Marine Biodiscovery and Synthetic Biology , 2015, Marine drugs.

[83]  Tudor I. Oprea,et al.  Defining the microbial effluxome in the content of the host-microbiome interaction , 2015, Front. Pharmacol..

[84]  W. S. Lakra,et al.  Multidrug Efflux Pumps from Enterobacteriaceae, Vibrio cholerae and Staphylococcus aureus Bacterial Food Pathogens , 2015, International journal of environmental research and public health.

[85]  Rajendra Prasad,et al.  Efflux pump proteins in antifungal resistance , 2014, Front. Pharmacol..

[86]  P. Ruggerone,et al.  Molecular Mechanism of MBX2319 Inhibition of Escherichia coli AcrB Multidrug Efflux Pump and Comparison with Other Inhibitors , 2014, Antimicrobial Agents and Chemotherapy.

[87]  Giordano Rampioni,et al.  The art of antibacterial warfare: Deception through interference with quorum sensing-mediated communication. , 2014, Bioorganic chemistry.

[88]  F. O'Gara,et al.  Bile Acids Repress Hypoxia-Inducible Factor 1 Signaling and Modulate the Airway Immune Response , 2014, Infection and Immunity.

[89]  J. Ramos,et al.  Interspecies signalling: Pseudomonas putida efflux pump TtgGHI is activated by indole to increase antibiotic resistance. , 2014, Environmental microbiology.

[90]  P. V. van Helden,et al.  Energy Metabolism and Drug Efflux in Mycobacterium tuberculosis , 2014, Antimicrobial Agents and Chemotherapy.

[91]  J. Nodwell,et al.  The TetR Family of Regulators , 2013, Microbiology and Molecular Reviews.

[92]  F. O'Gara,et al.  Molecular evolution of LysR-type transcriptional regulation in Pseudomonas aeruginosa. , 2013, Molecular phylogenetics and evolution.

[93]  J. Handzlik,et al.  Recent Advances in Multi-Drug Resistance (MDR) Efflux Pump Inhibitors of Gram-Positive Bacteria S. aureus , 2013, Antibiotics.

[94]  F. O'Gara,et al.  Pseudomonas aeruginosa Alkyl Quinolones Repress Hypoxia-Inducible Factor 1 (HIF-1) Signaling through HIF-1α Degradation , 2012, Infection and Immunity.

[95]  F. Rojo,et al.  Overproduction of the multidrug efflux pump MexEF-OprN does not impair Pseudomonas aeruginosa fitness in competition tests, but produces specific changes in bacterial regulatory networks. , 2012, Environmental microbiology.

[96]  S. Minagawa,et al.  RND type efflux pump system MexAB-OprM of pseudomonas aeruginosa selects bacterial languages, 3-oxo-acyl-homoserine lactones, for cell-to-cell communication , 2012, BMC Microbiology.

[97]  Fergal O'Gara,et al.  MexT Functions as a Redox-Responsive Regulator Modulating Disulfide Stress Resistance in Pseudomonas aeruginosa , 2012, Journal of bacteriology.

[98]  H. Nikaido,et al.  Broad-specificity efflux pumps and their role in multidrug resistance of Gram-negative bacteria. , 2012, FEMS microbiology reviews.

[99]  H. Uchiyama,et al.  Social Behaviours under Anaerobic Conditions in Pseudomonas aeruginosa , 2012, International journal of microbiology.

[100]  C. Taylor,et al.  Hypoxia Increases Antibiotic Resistance in Pseudomonas aeruginosa through Altering the Composition of Multidrug Efflux Pumps , 2012, Antimicrobial Agents and Chemotherapy.

[101]  Q. C. Truong-Bolduc,et al.  Reduced Aeration Affects the Expression of the NorB Efflux Pump of Staphylococcus aureus by Posttranslational Modification of MgrA , 2012, Journal of bacteriology.

[102]  Eric Déziel,et al.  MexEF-OprN Efflux Pump Exports the Pseudomonas Quinolone Signal (PQS) Precursor HHQ (4-hydroxy-2-heptylquinoline) , 2011, PloS one.

[103]  F. O'Gara,et al.  The Pseudomonas quinolone signal (PQS), and its precursor HHQ, modulate interspecies and interkingdom behaviour. , 2011, FEMS microbiology ecology.

[104]  Tudor I. Oprea,et al.  Microbial efflux pump inhibition: tactics and strategies. , 2011, Current pharmaceutical design.

[105]  D. Shlaes,et al.  Fix the antibiotics pipeline , 2011, Nature.

[106]  C. Taylor,et al.  Hypoxia, innate immunity and infection in the lung , 2010, Respiratory Physiology & Neurobiology.

[107]  M. Kuehn,et al.  Biological functions and biogenesis of secreted bacterial outer membrane vesicles. , 2010, Annual review of microbiology.

[108]  D. Ferreira,et al.  Reversal of fluconazole resistance by sulfated sterols from the marine sponge Topsentia sp. , 2009, Journal of natural products.

[109]  A. Yamaguchi,et al.  Role of the AraC–XylS family regulator YdeO in multi-drug resistance of Escherichia coli , 2009, The Journal of Antibiotics.

[110]  E. L. Zechiedrich,et al.  Quorum sensing and multidrug transporters in Escherichia coli , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[111]  S. Diggle,et al.  The MexGHI-OpmD multidrug efflux pump controls growth, antibiotic susceptibility and virulence in Pseudomonas aeruginosa via 4-quinolone-dependent cell-to-cell communication. , 2005, Microbiology.

[112]  M. Surette,et al.  Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication , 2003, Molecular microbiology.

[113]  Q. C. Truong-Bolduc,et al.  Characterization of NorR Protein, a Multifunctional Regulator of norA Expression in Staphylococcus aureus , 2003, Journal of bacteriology.

[114]  P. Cornelis,et al.  Characterization of a new efflux pump, MexGHI-OpmD, from Pseudomonas aeruginosa that confers resistance to vanadium. , 2002, Microbiology.

[115]  Michael C. Montalto,et al.  Hypoxia-inducible factor-1-dependent regulation of the multidrug resistance (MDR1) gene. , 2002, Cancer research.

[116]  E. L. Zechiedrich,et al.  Control of the AcrAB multidrug efflux pump by quorum‐sensing regulator SdiA , 2002, Molecular microbiology.

[117]  Angela Lee,et al.  Identification and Characterization of Inhibitors of Multidrug Resistance Efflux Pumps in Pseudomonas aeruginosa: Novel Agents for Combination Therapy , 2001, Antimicrobial Agents and Chemotherapy.

[118]  Angela Lee,et al.  Interplay between Efflux Pumps May Provide Either Additive or Multiplicative Effects on Drug Resistance , 2000, Journal of bacteriology.

[119]  B. Iglewski,et al.  Roles of Pseudomonas aeruginosa las and rhl quorum-sensing systems in control of elastase and rhamnolipid biosynthesis genes , 1997, Journal of bacteriology.

[120]  N. Vázquez-Laslop,et al.  Efflux of the Natural Polyamine Spermidine Facilitated by the Bacillus subtilis Multidrug Transporter Blt* , 1997, The Journal of Biological Chemistry.

[121]  A. Vleugels,et al.  Hypoxia increases potassium efflux from mammalian myocardium , 1976, Experientia.

[122]  N. O’Brien-Simpson,et al.  Outer Membrane Vesicle-Host Cell Interactions. , 2019, Microbiology spectrum.

[123]  H. Fukuzaki,et al.  Effects of hypoxia on sterol synthesis, acyl-CoA:cholesterol acyltransferase activity, and efflux of cholesterol in cultured rabbit skin fibroblasts. , 1990, Arteriosclerosis.