Complete genome sequence of Anaerococcus prevotii type strain (PC1T)

Anaerococcus prevotii (Foubert and Douglas 1948) Ezaki et al. 2001 is the type species of the genus, and is of phylogenetic interest because of its arguable assignment to the provisionally arranged family ‘Peptostreptococcaceae’. A. prevotii is an obligate anaerobic coccus, usually arranged in clumps or tetrads. The strain, whose genome is described here, was originally isolated from human plasma; other strains of the species were also isolated from clinical specimen. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the genus. Next to Finegoldia magna, A. prevotii is only the second species from the family ‘Peptostreptococcaceae’ for which a complete genome sequence is described. The 1,998,633 bp long genome (chromosome and one plasmid) with its 1852 protein-coding and 61 RNA genes is a part of the GenomicEncyclopedia ofBacteria andArchaea project.

[1]  J. Guillaume,et al.  [PubMed]. , 2020, Annales de dermatologie et de venereologie.

[2]  Natalia N. Ivanova,et al.  GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes , 2010, Nature Methods.

[3]  Natalia N. Ivanova,et al.  A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.

[4]  I-Min A. Chen,et al.  IMG ER: a system for microbial genome annotation expert review and curation , 2009, Bioinform..

[5]  C. Deming,et al.  Topographical and Temporal Diversity of the Human Skin Microbiome , 2009, Science.

[6]  J. Rougemont,et al.  A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.

[7]  Chris F. Taylor,et al.  The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.

[8]  I-Min A. Chen,et al.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..

[9]  Nikos Kyrpides,et al.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..

[10]  S. Finegold,et al.  Development of a Flow Chart for Identification of Gram-Positive Anaerobic Cocci in the Clinical Laboratory , 2006, Journal of Clinical Microbiology.

[11]  S. Finegold,et al.  Rapid identification of Gram-positive anaerobic coccal species originally classified in the genus Peptostreptococcus by multiplex PCR assays using genus- and species-specific primers. , 2003, Microbiology.

[12]  Christopher J. Lee,et al.  Multiple sequence alignment using partial order graphs , 2002, Bioinform..

[13]  T. Ezaki,et al.  Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. , 2001, International journal of systematic and evolutionary microbiology.

[14]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[15]  Wei Qian,et al.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.

[16]  D. Murdoch.  Gram-Positive Anaerobic Cocci , 1998, Clinical Microbiology Reviews.

[17]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[18]  T. Ezaki,et al.  Transfer of Peptococcus indolicus, Peptococcus asaccharolyticus, Peptococcus prevotii, and Peptococcus magnus to the Genus Peptostreptococcus and Proposal of Peptostreptococcus tetradius sp. nov. , 1983 .

[19]  M. A. Lambert,et al.  Differentiation of Peptococcus and Peptostreptococcus by gas-liquid chromatography of cellular fatty acids and metabolic products , 1979, Journal of clinical microbiology.

[20]  K. Schleifer,et al.  Peptidoglycan types of strains of the genus Peptococcus , 1973, Archiv für Mikrobiologie.

[21]  A. Prévot,et al.  Dictionnaire des Bactéries pathogènes pour l'homme , 1953 .

[22]  H. C. Douglas,et al.  Studies on the Anaerobic Micrococci , 1948, Journal of bacteriology.

[23]  R. G. Perkins.  Bergey's Manual of Determinative Bacteriology , 1930 .

[24]  S. Tasker,et al.  Bergey’s Manual of Systematic Bacteriology , 2010 .

[25]  T. Ezaki,et al.  The Anaerobic Gram-Positive Cocci , 2006 .

[26]  P. Sneath,et al.  Approved lists of bacterial names. , 1980, The Medical journal of Australia.

[27]  H. C. Douglas,et al.  Studies on the Anaerobic Micrococci: I. Taxonomic Considerations. , 1948, Journal of bacteriology.