Methylthioadenosine Suppresses Salmonella Virulence

In order to deploy virulence factors at appropriate times and locations, microbes must rapidly sense and respond to various metabolite signals. Previously, we showed a transient elevation of the methionine-derived metabolite methylthioadenosine (MTA) concentration in serum during systemic Salmonella enterica serovar Typhimurium infection. ABSTRACT In order to deploy virulence factors at appropriate times and locations, microbes must rapidly sense and respond to various metabolite signals. Previously, we showed a transient elevation of the methionine-derived metabolite methylthioadenosine (MTA) concentration in serum during systemic Salmonella enterica serovar Typhimurium infection. Here we explored the functional consequences of increased MTA concentrations on S. Typhimurium virulence. We found that MTA, but not other related metabolites involved in polyamine synthesis and methionine salvage, reduced motility, host cell pyroptosis, and cellular invasion. Further, we developed a genetic model of increased bacterial endogenous MTA production by knocking out the master repressor of the methionine regulon, metJ. Like MTA-treated S. Typhimurium, the ΔmetJ mutant displayed reduced motility, host cell pyroptosis, and invasion. These phenotypic effects of MTA correlated with suppression of flagellar and Salmonella pathogenicity island 1 (SPI-1) networks. S. Typhimurium ΔmetJ had reduced virulence in oral and intraperitoneal infection of C57BL/6J mice independently of the effects of MTA on SPI-1. Finally, ΔmetJ bacteria induced a less severe inflammatory cytokine response in a mouse sepsis model. Together, these data indicate that exposure of S. Typhimurium to MTA or disruption of the bacterial methionine metabolism pathway suppresses S. Typhimurium virulence.

[1]  D. Koshland,et al.  Evidence for an S-adenosylmethionine requirement in the chemotactic behavior of Salmonella typhimurium. , 1975, Journal of molecular biology.

[2]  Laura G. Dubois,et al.  Human genetic and metabolite variation reveals that methylthioadenosine is a prognostic biomarker and an inflammatory regulator in sepsis , 2017, Science Advances.

[3]  Yang Xie,et al.  The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention , 2017, Cell.

[4]  F. Shao,et al.  Human NAIP and mouse NAIP1 recognize bacterial type III secretion needle protein for inflammasome activation , 2013, Proceedings of the National Academy of Sciences.

[5]  K. Appelt,et al.  Structure-based design, synthesis, and antimicrobial activity of indazole-derived SAH/MTA nucleosidase inhibitors. , 2003, Journal of medicinal chemistry.

[6]  J. Slauch,et al.  FliZ Regulates Expression of the Salmonella Pathogenicity Island 1 Invasion Locus by Controlling HilD Protein Activity in Salmonella enterica Serovar Typhimurium , 2010, Journal of bacteriology.

[7]  V. Schramm,et al.  Transition state analogues of 5′-methylthioadenosine nucleosidase disrupt quorum sensing , 2009, Nature chemical biology.

[8]  S Falkow,et al.  The Salmonella invasin SipB induces macrophage apoptosis by binding to caspase-1. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[9]  S. Iyoda,et al.  A flagellar gene fliZ regulates the expression of invasion genes and virulence phenotype in Salmonella enterica serovar Typhimurium. , 2001, Microbial pathogenesis.

[10]  V. Miller,et al.  InvF Is Required for Expression of Genes Encoding Proteins Secreted by the SPI1 Type III Secretion Apparatus inSalmonella typhimurium , 1999, Journal of bacteriology.

[11]  Erica L. Schwalm,et al.  Mechanistic Diversity of Radical S-Adenosylmethionine (SAM)-dependent Methylation* , 2014, The Journal of Biological Chemistry.

[12]  Javier López-Garrido,et al.  Virulence Gene Regulation by l-Arabinose in Salmonella enterica , 2015, Genetics.

[13]  Yuan-ming Luo,et al.  Identification and Characterization of a Highly Conserved Crenarchaeal Protein Lysine Methyltransferase with Broad Substrate Specificity , 2012, Journal of bacteriology.

[14]  G. Salmond,et al.  A metabolic regulator modulates virulence and quorum sensing signal production in Pectobacterium atrosepticum. , 2013, Molecular plant-microbe interactions : MPMI.

[15]  F. Corrales,et al.  Methylthioadenosine (MTA) Regulates Liver Cells Proteome and Methylproteome: Implications in Liver Biology and Disease* , 2016, Molecular & Cellular Proteomics.

[16]  Patrick Jenny,et al.  Near Surface Swimming of Salmonella Typhimurium Explains Target-Site Selection and Cooperative Invasion , 2012, PLoS pathogens.

[17]  J. Galán,et al.  Salmonella spp. are cytotoxic for cultured macrophages , 1996, Molecular microbiology.

[18]  J. Roth,et al.  Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota , 2011, Proceedings of the National Academy of Sciences.

[19]  Cristiano G. Moreira,et al.  QseC Mediates Salmonella enterica Serovar Typhimurium Virulence In Vitro and In Vivo , 2009, Infection and Immunity.

[20]  G. Evans,et al.  Second generation transition state analogue inhibitors of human 5'-methylthioadenosine phosphorylase. , 2005, Journal of medicinal chemistry.

[21]  P. Sergiev,et al.  The ybiN gene of Escherichia coli encodes adenine-N6 methyltransferase specific for modification of A1618 of 23 S ribosomal RNA, a methylated residue located close to the ribosomal exit tunnel. , 2008, Journal of molecular biology.

[22]  V. Kamath,et al.  Synthesis of a potent transition-state inhibitor of 5'-deoxy-5'-methylthioadenosine phosphorylase. , 2004, Journal of medicinal chemistry.

[23]  Russell Maurer,et al.  Intestinal short‐chain fatty acids alter Salmonella typhimurium invasion gene expression and virulence through BarA/SirA , 2002, Molecular microbiology.

[24]  Hyunjin Yoon,et al.  Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression , 2007, Nucleic acids research.

[25]  Arthur H Samuels,et al.  At The Last , 1916 .

[26]  S. Falkow,et al.  Salmonella typhimurium invasion induces apoptosis in infected macrophages. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[27]  G. Evans,et al.  Picomolar transition state analogue inhibitors of human 5'-methylthioadenosine phosphorylase and X-ray structure with MT-immucillin-A. , 2004, Biochemistry.

[28]  M. Sahyun Methionine. , 2020, The American journal of digestive diseases.

[29]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[30]  G. Dougan,et al.  Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota , 2007, PLoS biology.

[31]  J. Galán,et al.  Requirement for exported proteins in secretion through the invasion-associated type III system of Salmonella typhimurium , 1996, Infection and immunity.

[32]  Samuel I. Miller,et al.  Functional genetic screen of human diversity reveals that a methionine salvage enzyme regulates inflammatory cell death , 2012, Proceedings of the National Academy of Sciences.

[33]  G. Evans,et al.  Growth and Metastases of Human Lung Cancer Are Inhibited in Mouse Xenografts by a Transition State Analogue of 5′-Methylthioadenosine Phosphorylase* , 2010, The Journal of Biological Chemistry.

[34]  J. Casadesús,et al.  DNA methylation in bacteria: from the methyl group to the methylome. , 2015, Current opinion in microbiology.

[35]  B. Stoll,et al.  Preventative oral methylthioadenosine is anti-inflammatory and reduces DSS-induced colitis in mice. , 2012, American journal of physiology. Gastrointestinal and liver physiology.

[36]  Catherine A. Lee,et al.  hilA is a novel ompR/toxR family member that activates the expression of Salmonella typhimurium invasion genes , 1995, Molecular microbiology.

[37]  D. A. Smith,et al.  Regulation of methionine synthesis in Salmonella typhimurium: mutants resistant to inhibition by analogues of methionine. , 1968, Genetics.

[38]  C. Alpuche-Aranda,et al.  B cell precursors are targets for Salmonella infection. , 2009, Microbial pathogenesis.

[39]  J. Galán,et al.  Differential Regulation of Salmonella typhimurium Type III Secreted Proteins by Pathogenicity Island 1 (SPI-1)-Encoded Transcriptional Activators InvF and HilA , 1999, Infection and Immunity.

[40]  T. Jenuwein,et al.  The many faces of histone lysine methylation. , 2002, Current opinion in cell biology.

[41]  J. Gunn,et al.  Salmonella enterica Serovar Typhimurium Invasion Is Repressed in the Presence of Bile , 2000, Infection and Immunity.

[42]  S. Falkow,et al.  Salmonella typhimurium initiates murine infection by penetrating and destroying the specialized epithelial M cells of the Peyer's patches , 1994, The Journal of experimental medicine.

[43]  Nikhat Parveen,et al.  Methylthioadenosine/S‐adenosylhomocysteine nucleosidase, a critical enzyme for bacterial metabolism , 2011, Molecular microbiology.

[44]  J. B. Armstrong Chemotaxis and methionine metabolism in Escherichia coli. , 1972, Canadian journal of microbiology.

[45]  C. Alpuche-Aranda,et al.  Salmonella infects B cells by macropinocytosis and formation of spacious phagosomes but does not induce pyroptosis in favor of its survival. , 2012, Microbial pathogenesis.

[46]  K. Hughes,et al.  The Salmonella Spi1 Virulence Regulatory Protein HilD Directly Activates Transcription of the Flagellar Master Operon flhDC , 2014, Journal of bacteriology.

[47]  J. Mekalanos,et al.  MetR-Regulated Vibrio cholerae Metabolism Is Required for Virulence , 2012, mBio.

[48]  R. Salter,et al.  Methylthioadenosine Reprograms Macrophage Activation through Adenosine Receptor Stimulation , 2014, PloS one.

[49]  J. Rotter,et al.  Human genetic variation in VAC14 regulates Salmonella invasion and typhoid fever through modulation of cholesterol , 2017, Proceedings of the National Academy of Sciences.

[50]  Lloyd H. Michael,et al.  The Guide for the Care and Use of Laboratory Animals. , 2016, ILAR journal.

[51]  S. Miller,et al.  A PhoP-repressed gene promotes Salmonella typhimurium invasion of epithelial cells , 1993, Journal of bacteriology.

[52]  Christopher V. Rao,et al.  The Role of Coupled Positive Feedback in the Expression of the SPI1 Type Three Secretion System in Salmonella , 2010, PLoS pathogens.

[53]  G. Evans,et al.  Design and synthesis of potent "sulfur-free" transition state analogue inhibitors of 5'-methylthioadenosine nucleosidase and 5'-methylthioadenosine phosphorylase. , 2010, Journal of medicinal chemistry.

[54]  S. Harayama,et al.  Effect of motility and chemotaxis on the invasion of Salmonella typhimurium into HeLa cells. , 1990, Microbial pathogenesis.

[55]  J. Abernathy,et al.  Deletions in the pyruvate pathway of Salmonella Typhimurium alter SPI1-mediated gene expression and infectivity , 2013, Journal of Animal Science and Biotechnology.

[56]  B. D. Davis,et al.  MUTANTS OF ESCHERICHIA COLI REQUIRING METHIONINE OR VITAMIN B12 , 1950, Journal of bacteriology.

[57]  K. Darwin,et al.  Type III secretion chaperone‐dependent regulation: activation of virulence genes by SicA and InvF in Salmonella typhimurium , 2001, The EMBO journal.

[58]  R. L. Lucas,et al.  Co‐ordinate regulation of Salmonella typhimurium invasion genes by environmental and regulatory factors is mediated by control of hilA expression , 1996, Molecular microbiology.

[59]  B. Ahmer,et al.  The intestinal fatty acid propionate inhibits Salmonella invasion through the post‐translational control of HilD , 2013, Molecular microbiology.

[60]  W. Wackernagel,et al.  Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. , 1995, Gene.

[61]  K. Cornell,et al.  Cloning and expression of Escherichia coli 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: identification of the pfs gene product. , 1998, Biochimica et biophysica acta.

[62]  L. Gaspa,et al.  Comparative effects of L-methionine, S-adenosyl-L-methionine and 5'-methylthioadenosine on the growth of preneoplastic lesions and DNA methylation in rat liver during the early stages of hepatocarcinogenesis. , 1991, Anticancer research.

[63]  C. Alpuche-Aranda,et al.  Survival of Salmonella enterica Serovar Typhimurium within Late Endosomal-Lysosomal Compartments of B Lymphocytes Is Associated with the Inability To Use the Vacuolar Alternative Major Histocompatibility Complex Class I Antigen-Processing Pathway , 2005, Infection and Immunity.

[64]  K. Appelt,et al.  Structure-based design, synthesis, and antimicrobial activity of purine derived SAH/MTA nucleosidase inhibitors. , 2004, Bioorganic & medicinal chemistry letters.

[65]  H. R. Schroeder,et al.  Isolation and identification of 5-methylthioribose from Escherichia coli B. , 1972, Biochimica et biophysica acta.

[66]  A. K. Mohanty,et al.  Identification of the Periplasmic Cobalamin-Binding Protein BtuF of Escherichia coli , 2002, Journal of bacteriology.

[67]  J. Slauch,et al.  Integrating Global Regulatory Input Into the Salmonella Pathogenicity Island 1 Type III Secretion System , 2012, Genetics.

[68]  J. Hinton,et al.  InvS Coordinates Expression of PrgH and FimZ and Is Required for Invasion of Epithelial Cells by Salmonella enterica serovar Typhimurium , 2017, Journal of bacteriology.

[69]  J. Locasale,et al.  Histone Methylation Dynamics and Gene Regulation Occur through the Sensing of One-Carbon Metabolism. , 2015, Cell metabolism.

[70]  K. Hughes,et al.  The Effect of Cell Growth Phase on the Regulatory Cross-Talk between Flagellar and Spi1 Virulence Gene Expression , 2014, PLoS pathogens.

[71]  Shelly C. Lu,et al.  5′‐methylthioadenosine modulates the inflammatory response to endotoxin in mice and in rat hepatocytes , 2004, Hepatology.

[72]  P. Desai,et al.  Flagellin Is Required for Host Cell Invasion and Normal Salmonella Pathogenicity Island 1 Expression by Salmonella enterica Serovar Paratyphi A , 2015, Infection and Immunity.

[73]  B. Wanner,et al.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[74]  Roland R. Regoes,et al.  Lymph Node Colonization Dynamics after Oral Salmonella Typhimurium Infection in Mice , 2013, PLoS pathogens.

[75]  Julie S. Valastyan,et al.  A Host-Produced Autoinducer-2 Mimic Activates Bacterial Quorum Sensing. , 2016, Cell host & microbe.

[76]  D. Berdnik,et al.  Growth Phase-Regulated Induction ofSalmonella-Induced Macrophage Apoptosis Correlates with Transient Expression of SPI-1 Genes , 1999, Journal of bacteriology.

[77]  L. M. Schechter,et al.  AraC/XylS family members, HilD and HilC, directly activate virulence gene expression independently of HilA in Salmonella typhimurium , 2003, Molecular microbiology.

[78]  J. Galán,et al.  Cloning and molecular characterization of genes whose products allow Salmonella typhimurium to penetrate tissue culture cells. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[79]  P. Sergiev,et al.  The last rRNA methyltransferase of E. coli revealed: the yhiR gene encodes adenine-N6 methyltransferase specific for modification of A2030 of 23S ribosomal RNA. , 2012, RNA.

[80]  J. Slauch,et al.  HilD, HilC and RtsA constitute a feed forward loop that controls expression of the SPI1 type three secretion system regulator hilA in Salmonella enterica serovar Typhimurium , 2005, Molecular microbiology.

[81]  Catherine A. Lee,et al.  The HilA Box and Sequences outside It Determine the Magnitude of HilA-Dependent Activation of PprgHfrom Salmonella Pathogenicity Island 1 , 2001, Journal of bacteriology.