The Transcriptional Regulator SnoN Promotes the Proliferation of Cerebellar Granule Neuron Precursors in the Postnatal Mouse Brain

Control of neuronal precursor cell proliferation is essential for normal brain development, and deregulation of this fundamental developmental event contributes to brain diseases. Typically, neuronal precursor cell proliferation extends over long periods of time during brain development. However, how neuronal precursor proliferation is regulated in a temporally specific manner remains to be elucidated. Here, we report that conditional KO of the transcriptional regulator SnoN in cerebellar granule neuron precursors robustly inhibits the proliferation of these cells and promotes their cell cycle exit at later stages of cerebellar development in the postnatal male and female mouse brain. In laser capture microdissection followed by RNA-Seq, designed to profile gene expression specifically in the external granule layer of the cerebellum, we find that SnoN promotes the expression of cell proliferation genes and concomitantly represses differentiation genes in granule neuron precursors in vivo. Remarkably, bioinformatics analyses reveal that SnoN-regulated genes contain binding sites for the transcription factors N-myc and Pax6, which promote the proliferation and differentiation of granule neuron precursors, respectively. Accordingly, we uncover novel physical interactions of SnoN with N-myc and Pax6 in cells. In behavior analyses, conditional KO of SnoN impairs cerebellar-dependent learning in a delayed eye-blink conditioning paradigm, suggesting that SnoN-regulation of granule neuron precursor proliferation bears functional consequences at the organismal level. Our findings define a novel function and mechanism for the major transcriptional regulator SnoN in the control of granule neuron precursor proliferation in the mammalian brain. SIGNIFICANCE STATEMENT This study reports the discovery that the transcriptional regulator SnoN plays a crucial role in the proliferation of cerebellar granule neuron precursors in the postnatal mouse brain. Conditional KO of SnoN in granule neuron precursors robustly inhibits the proliferation of these cells and promotes their cycle exit specifically at later stages of cerebellar development, with biological consequences of impaired cerebellar-dependent learning. Genomics and bioinformatics analyses reveal that SnoN promotes the expression of cell proliferation genes and concomitantly represses cell differentiation genes in vivo. Although SnoN has been implicated in distinct aspects of the development of postmitotic neurons, this study identifies a novel function for SnoN in neuronal precursors in the mammalian brain.

[1]  S. Pons,et al.  Summary Bmp 2 antagonizes sonic hedgehog-mediated proliferation of cerebellar granule neurones through Smad 5 signalling , 2022 .

[2]  David J. Arenillas,et al.  oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets , 2012, G3: Genes | Genomes | Genetics.

[3]  Eric Raponi,et al.  Zfp423 controls proliferation and differentiation of neural precursors in cerebellar vermis formation , 2006, Proceedings of the National Academy of Sciences.

[4]  A. Bonni,et al.  Regulation of neuronal connectivity in the mammalian brain by chromatin remodeling , 2019, Current Opinion in Neurobiology.

[5]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[6]  Richard J. T. Wingate,et al.  Consensus Paper: Cerebellar Development , 2015, The Cerebellum.

[7]  M. Masu,et al.  A SnoN–Ccd1 Pathway Promotes Axonal Morphogenesis in the Mammalian Brain , 2009, The Journal of Neuroscience.

[8]  C. Englund,et al.  Unipolar Brush Cells of the Cerebellum Are Produced in the Rhombic Lip and Migrate through Developing White Matter , 2006, The Journal of Neuroscience.

[9]  M. Hatten,et al.  Mechanisms of neural patterning and specification in the developing cerebellum. , 1995, Annual review of neuroscience.

[10]  M. Hatten,et al.  Activated Notch2 Signaling Inhibits Differentiation of Cerebellar Granule Neuron Precursors by Maintaining Proliferation , 2001, Neuron.

[11]  M. Greenberg,et al.  Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors , 2019, Cell reports.

[12]  Selmaan N. Chettih,et al.  Cerebellar-Dependent Expression of Motor Learning during Eyeblink Conditioning in Head-Fixed Mice , 2014, The Journal of Neuroscience.

[13]  Robert A. Edwards,et al.  Quality control and preprocessing of metagenomic datasets , 2011, Bioinform..

[14]  A. Joyner,et al.  Morphology, molecular codes, and circuitry produce the three-dimensional complexity of the cerebellum. , 2007, Annual review of cell and developmental biology.

[15]  Sylvia M. Wilson,et al.  SnoN is a cell type-specific mediator of transforming growth factor-beta responses. , 2005, The Journal of biological chemistry.

[16]  I. Pot,et al.  Identification of a Novel Link between the Protein Kinase NDR1 and TGFβ Signaling in Epithelial Cells , 2013, PloS one.

[17]  Daniel H Turnbull,et al.  The engrailed homeobox genes are required in multiple cell lineages to coordinate sequential formation of fissures and growth of the cerebellum. , 2012, Developmental biology.

[18]  S. Wang,et al.  Cerebellar associative sensory learning defects in five mouse autism models , 2015, eLife.

[19]  Masahiko Watanabe,et al.  Ptf1a, a bHLH Transcriptional Gene, Defines GABAergic Neuronal Fates in Cerebellum , 2005, Neuron.

[20]  Wei Li,et al.  RSeQC: quality control of RNA-seq experiments , 2012, Bioinform..

[21]  Hongkai Ji,et al.  Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis , 2010, Proceedings of the National Academy of Sciences.

[22]  Michael D. Cole,et al.  Nmyc upregulation by sonic hedgehog signaling promotes proliferation in developing cerebellar granule neuron precursors , 2003, Development.

[23]  A. Joyner,et al.  Cerebellar Granule Cell Replenishment Post-Injury by Adaptive Reprogramming of Nestin+ Progenitors , 2017, Nature Neuroscience.

[24]  Azad Bonni,et al.  Cell-Intrinsic Regulation of Axonal Morphogenesis by the Cdh1-APC Target SnoN , 2006, Neuron.

[25]  H. Zoghbi,et al.  Math1 is essential for genesis of cerebellar granule neurons , 1997, Nature.

[26]  C. Cepko,et al.  An Isoform-Specific SnoN1-FOXO1 Repressor Complex Controls Neuronal Morphogenesis and Positioning in the Mammalian Brain , 2011, Neuron.

[27]  J. Wrana,et al.  TGF-β induces assembly of a Smad2–Smurf2 ubiquitin ligase complex that targets SnoN for degradation , 2001, Nature Cell Biology.

[28]  M. Scott,et al.  Control of Neuronal Precursor Proliferation in the Cerebellum by Sonic Hedgehog , 1999, Neuron.

[29]  A. Bonni,et al.  Transcriptional Regulation of Neuronal Polarity and Morphogenesis in the Mammalian Brain , 2011, Neuron.

[30]  J. Harper,et al.  A Calcium-Regulated MEF2 Sumoylation Switch Controls Postsynaptic Differentiation , 2006, Science.

[31]  A. Bonni,et al.  Moving past proliferation: new roles for Cdh1–APC in postmitotic neurons , 2005, Trends in Neurosciences.

[32]  Guoyan Zhao,et al.  Identification of muscle-specific regulatory modules in Caenorhabditis elegans. , 2007, Genome research.

[33]  Henry Kennedy,et al.  Cell-cycle control and cortical development , 2007, Nature Reviews Neuroscience.

[34]  Robert Machold,et al.  Medulloblastoma can be initiated by deletion of Patched in lineage-restricted progenitors or stem cells. , 2008, Cancer cell.

[35]  Sylvia M. Wilson,et al.  SnoN Is a Cell Type-specific Mediator of Transforming Growth Factor-β Responses* , 2005, Journal of Biological Chemistry.

[36]  Takuro Nakamura,et al.  Meis1 Coordinates Cerebellar Granule Cell Development by Regulating Pax6 Transcription, BMP Signaling and Atoh1 Degradation , 2018, The Journal of Neuroscience.

[37]  Azad Bonni,et al.  Cdh1-APC Controls Axonal Growth and Patterning in the Mammalian Brain , 2004, Science.

[38]  Yanhua Du,et al.  WNT/NOTCH Pathway Is Essential for the Maintenance and Expansion of Human MGE Progenitors , 2019, Stem cell reports.

[39]  A. Pestronk Histology of the Nervous System of Man and Vertebrates , 1997, Neurology.

[40]  Christopher M. Vockley,et al.  Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum , 2015, Nature Neuroscience.

[41]  R. Weinberg,et al.  SnoN and Ski protooncoproteins are rapidly degraded in response to transforming growth factor beta signaling. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Shane A. Heiney,et al.  Chromatin remodeling inactivates activity genes and regulates neural coding , 2016, Science.

[43]  Paul Theodor Pyl,et al.  HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.

[44]  A. Bonni,et al.  The dynamic ubiquitin ligase duo: Cdh1-APC and Cdc20-APC regulate neuronal morphogenesis and connectivity , 2010, Current Opinion in Neurobiology.

[45]  K. Luo,et al.  Negative feedback regulation of TGF-beta signaling by the SnoN oncoprotein. , 1999, Science.

[46]  A. Bonni,et al.  A Cdc20-APC Ubiquitin Signaling Pathway Regulates Presynaptic Differentiation , 2009, Science.

[47]  D. Reinberg,et al.  The chromatin remodeling factor CHD7 controls cerebellar development by regulating reelin expression , 2017, The Journal of clinical investigation.

[48]  Huda Y Zoghbi,et al.  Deletion of Atoh1 Disrupts Sonic Hedgehog Signaling in the Developing Cerebellum and Prevents Medulloblastoma , 2009, Science.

[49]  M. Sur,et al.  Direct Lineage Conversion of Adult Mouse Liver Cells and B Lymphocytes to Neural Stem Cells , 2014, Stem cell reports.

[50]  H. Zoghbi,et al.  Math 1 is essential forgenesis of cerebellargranuleneurons , 1997 .

[51]  Zengqiang Yuan,et al.  TGFβ-Smad2 Signaling Regulates the Cdh1-APC/SnoN Pathway of Axonal Morphogenesis , 2008, The Journal of Neuroscience.

[52]  J. Wrana,et al.  Smad3 recruits the anaphase-promoting complex for ubiquitination and degradation of SnoN. , 2001, Genes & development.

[53]  K. Luo,et al.  Negative Feedback Regulation of TGF-β Signaling by the SnoN Oncoprotein , 1999 .

[54]  Ben Deverett,et al.  Cerebellar granule cells acquire a widespread predictive feedback signal during motor learning , 2017, Nature Neuroscience.

[55]  Richard A. Muscat,et al.  Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding , 2018, Science.

[56]  J. Harper,et al.  TIF1γ Protein Regulates Epithelial-Mesenchymal Transition by Operating as a Small Ubiquitin-like Modifier (SUMO) E3 Ligase for the Transcriptional Regulator SnoN1* , 2014, The Journal of Biological Chemistry.

[57]  Mugen Liu,et al.  A PCR-Based Method for RNA Probes and Applications in Neuroscience , 2018, Front. Neurosci..

[58]  M. Roussel,et al.  The Interaction of Myc with Miz1 Defines Medulloblastoma Subgroup Identity. , 2016, Cancer cell.

[59]  Liming Cheng,et al.  Coupled electrophysiological recording and single cell transcriptome analyses revealed molecular mechanisms underlying neuronal maturation , 2016, Protein & Cell.

[60]  D. Geschwind,et al.  Sumoylated MEF2A Coordinately Eliminates Orphan Presynaptic Sites and Promotes Maturation of Presynaptic Boutons , 2013, The Journal of Neuroscience.

[61]  H. Zoghbi,et al.  Math1 Expression Redefines the Rhombic Lip Derivatives and Reveals Novel Lineages within the Brainstem and Cerebellum , 2005, Neuron.

[62]  Gord Fishell,et al.  Math1 Is Expressed in Temporally Discrete Pools of Cerebellar Rhombic-Lip Neural Progenitors , 2005, Neuron.

[63]  A. Bonni,et al.  RNF8/UBC13 ubiquitin signaling suppresses synapse formation in the mammalian brain , 2017, Nature Communications.

[64]  G. Enikolopov,et al.  A population of Nestin expressing progenitors in the cerebellum exhibits increased tumorigenicity , 2013, Nature Neuroscience.

[65]  Mary Beth Nebel,et al.  Altered cerebellar connectivity in autism and cerebellar-mediated rescue of autism-related behaviors in mice , 2017, Nature Neuroscience.

[66]  A. Bonni,et al.  Thinking within the D box: Initial identification of Cdh1–APC substrates in the nervous system , 2007, Molecular and Cellular Neuroscience.

[67]  A. Bonni,et al.  SnoN signaling in proliferating cells and postmitotic neurons , 2012, FEBS letters.

[68]  Shirin Bonni,et al.  Suppression of TGFβ-Induced Epithelial-Mesenchymal Transition Like Phenotype by a PIAS1 Regulated Sumoylation Pathway in NMuMG Epithelial Cells , 2010, PloS one.

[69]  M. Hatten,et al.  Cerebellum development and medulloblastoma. , 2011 .

[70]  S. Pons,et al.  Bmp2 antagonizes sonic hedgehog-mediated proliferation of cerebellar granule neurones through Smad5 signalling , 2004, Development.

[71]  L. Luo,et al.  Timing Neurogenesis and Differentiation: Insights from Quantitative Clonal Analyses of Cerebellar Granule Cells , 2008, The Journal of Neuroscience.